Experiment set9S325 for Enterobacter sp. TBS_079

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_01952 -5.3 -1.2 hypothetical protein compare
MPMX20_01286 -5.1 -2.0 Sec-independent protein translocase protein TatE compare
MPMX20_04668 -5.1 -2.8 hypothetical protein compare
MPMX20_04079 -5.1 -1.6 Protein-export membrane protein SecG compare
MPMX20_01950 -4.9 -3.4 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03153 -4.5 -1.7 hypothetical protein compare
MPMX20_04444 -4.4 -1.4 Sec-independent protein translocase protein TatA compare
MPMX20_00388 -4.3 -1.0 hypothetical protein compare
MPMX20_04640 -4.3 -2.4 Phosphate transport system permease protein PstC compare
MPMX20_01362 -4.2 -5.0 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_04427 -4.2 -1.0 5S ribosomal RNA compare
MPMX20_02574 -4.2 -2.9 putative intracellular septation protein A compare
MPMX20_00453 -4.1 -2.1 RNA-binding protein Hfq compare
MPMX20_02591 -4.0 -7.7 DNA-binding protein H-NS compare
MPMX20_02826 -4.0 -2.4 Cold shock-like protein CspB compare
MPMX20_00831 -3.9 -5.8 RNA polymerase-binding transcription factor DksA compare
MPMX20_01548 -3.8 -5.8 putative ABC transporter ATP-binding/permease protein compare
MPMX20_03010 -3.8 -2.6 UDP-glucose 4-epimerase compare
MPMX20_02769 -3.7 -2.4 putative transcriptional regulatory protein YebC compare
MPMX20_04601 -3.7 -2.2 DNA polymerase I compare
MPMX20_01156 -3.7 -3.2 hypothetical protein compare
MPMX20_03022 -3.7 -2.5 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04626 -3.7 -2.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01028 -3.6 -2.5 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04440 -3.6 -1.6 Transcription antitermination protein RfaH compare
MPMX20_00102 -3.6 -2.5 hypothetical protein compare
MPMX20_04483 -3.6 -2.4 Lipid III flippase compare
MPMX20_00109 -3.5 -19.3 hypothetical protein compare
MPMX20_03019 -3.4 -17.0 hypothetical protein compare
MPMX20_01361 -3.4 -8.7 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_01354 -3.3 -3.1 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_01741 -3.2 -5.7 Dihydroorotase compare
MPMX20_03021 -3.2 -9.5 hypothetical protein compare
MPMX20_04595 -3.2 -1.9 Glutamine synthetase compare
MPMX20_03018 -3.2 -6.0 hypothetical protein compare
MPMX20_02635 -3.1 -2.7 Release factor glutamine methyltransferase compare
MPMX20_02494 -3.0 -6.8 Orotidine 5'-phosphate decarboxylase compare
MPMX20_03685 -3.0 -3.6 RecBCD enzyme subunit RecC compare
MPMX20_03382 -3.0 -2.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_00721 -2.9 -3.1 Chaperone protein DnaJ compare
MPMX20_03209 -2.9 -2.8 NADH-quinone oxidoreductase subunit K compare
MPMX20_01118 -2.9 -0.9 hypothetical protein compare
MPMX20_03310 -2.9 -5.4 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_03490 -2.8 -4.8 SsrA-binding protein compare
MPMX20_00110 -2.8 -13.2 hypothetical protein compare
MPMX20_00106 -2.8 -7.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_02535 -2.8 -2.1 Pyrimidine-specific ribonucleoside hydrolase RihB compare
MPMX20_03683 -2.7 -4.2 RecBCD enzyme subunit RecB compare
MPMX20_00514 -2.7 -7.6 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_01549 -2.7 -4.1 ATP-binding/permease protein CydD compare
MPMX20_01552 -2.7 -4.4 hypothetical protein compare
MPMX20_04253 -2.7 -0.8 Malonate decarboxylase acyl carrier protein compare
MPMX20_04489 -2.6 -11.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_04768 -2.6 -14.6 hypothetical protein compare
MPMX20_04077 -2.6 -7.7 Argininosuccinate synthase compare
MPMX20_04197 -2.6 -7.0 Trk system potassium uptake protein TrkA compare
MPMX20_03986 -2.6 -2.7 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_03017 -2.6 -8.6 hypothetical protein compare
MPMX20_03013 -2.5 -10.4 dTDP-glucose 4,6-dehydratase compare
MPMX20_00226 -2.5 -5.9 Bifunctional purine biosynthesis protein PurH compare
MPMX20_03212 -2.5 -4.1 NADH-quinone oxidoreductase subunit H compare
MPMX20_04520 -2.5 -6.5 Argininosuccinate lyase compare
MPMX20_00105 -2.5 -8.5 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_02766 -2.4 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_04162 -2.4 -3.7 3-dehydroquinate dehydratase compare
MPMX20_03407 -2.4 -4.0 Chaperone protein HscA compare
MPMX20_03211 -2.4 -3.3 NADH-quinone oxidoreductase subunit I compare
MPMX20_04066 -2.4 -1.9 ATP-dependent RNA helicase DeaD compare
MPMX20_04119 -2.4 -2.6 DNA polymerase III subunit chi compare
MPMX20_00745 -2.3 -3.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_03214 -2.3 -6.3 NADH-quinone oxidoreductase subunit F compare
MPMX20_03210 -2.2 -5.1 NADH-quinone oxidoreductase subunit J compare
MPMX20_03468 -2.2 -5.0 T-protein compare
MPMX20_03479 -2.2 -1.5 30S ribosomal protein S16 compare
MPMX20_00386 -2.2 -1.5 hypothetical protein compare
MPMX20_04276 -2.1 -4.5 DNA adenine methylase compare
MPMX20_04442 -2.1 -3.8 Sec-independent protein translocase protein TatC compare
MPMX20_01596 -2.1 -12.2 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_01366 -2.1 -2.5 Tol-Pal system protein TolQ compare
MPMX20_00108 -2.1 -10.0 hypothetical protein compare
MPMX20_03218 -2.0 -2.7 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_01370 -2.0 -2.6 Peptidoglycan-associated lipoprotein compare
MPMX20_03780 -2.0 -5.1 Transketolase 1 compare
MPMX20_04482 -2.0 -4.2 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
MPMX20_02767 -2.0 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_04443 -1.9 -2.3 Sec-independent protein translocase protein TatB compare
MPMX20_01984 -1.9 -1.7 Ribonuclease T compare
MPMX20_00456 -1.9 -4.2 Modulator of FtsH protease HflC compare
MPMX20_01380 -1.9 -2.1 hypothetical protein compare
MPMX20_03012 -1.9 -7.0 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_03217 -1.8 -3.2 NADH-quinone oxidoreductase subunit B compare
MPMX20_02478 -1.8 -4.7 Putrescine export system ATP-binding protein SapF compare
MPMX20_01030 -1.8 -4.3 Lon protease compare
MPMX20_03681 -1.8 -5.6 Amino-acid acetyltransferase compare
MPMX20_03216 -1.8 -5.7 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_04650 -1.8 -2.9 tRNA modification GTPase MnmE compare
MPMX20_01181 -1.8 -3.7 Putative transferase YhbX compare
MPMX20_03215 -1.8 -1.9 NADH-quinone oxidoreductase subunit E compare
MPMX20_01369 -1.8 -4.1 Tol-Pal system protein TolB compare
MPMX20_01607 -1.7 -2.6 Outer membrane protein A compare
MPMX20_00693 -1.7 -3.8 Phosphoserine phosphatase compare
MPMX20_03208 -1.7 -3.7 NADH-quinone oxidoreductase subunit L compare
MPMX20_00740 -1.7 -4.9 Carbamoyl-phosphate synthase large chain compare
MPMX20_03213 -1.7 -4.9 NADH-quinone oxidoreductase subunit G compare
MPMX20_00087 -1.7 -1.9 DNA-directed RNA polymerase subunit omega compare
MPMX20_03036 -1.7 -3.3 Putative acetyltransferase compare
MPMX20_01005 -1.7 -1.5 Transcriptional repressor NrdR compare
MPMX20_03020 -1.7 -3.6 hypothetical protein compare
MPMX20_03338 -1.7 -2.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_04598 -1.6 -4.3 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX20_01566 -1.6 -6.1 Phosphoserine aminotransferase compare
MPMX20_04279 -1.6 -1.4 Shikimate kinase 1 compare
MPMX20_04189 -1.6 -3.6 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_03206 -1.6 -4.5 NADH-quinone oxidoreductase subunit N compare
MPMX20_00785 -1.6 -1.9 D-alanine--D-alanine ligase B compare
MPMX20_00998 -1.6 -2.6 Sec translocon accessory complex subunit YajC compare
MPMX20_03253 -1.6 -4.0 tRNA pseudouridine synthase A compare
MPMX20_01616 -1.6 -1.3 Heat shock protein HspQ compare
MPMX20_03409 -1.6 -1.5 Iron-binding protein IscA compare
MPMX20_01101 -1.6 -1.3 Peptidyl-prolyl cis-trans isomerase B compare
MPMX20_01098 -1.6 -2.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_01750 -1.6 -3.8 Negative regulator of flagellin synthesis compare
MPMX20_02034 -1.5 -2.9 hypothetical protein compare
MPMX20_02827 -1.5 -2.8 hypothetical protein compare
MPMX20_04029 -1.5 -2.2 Cyclic dipyrimidine nucleotide synthase compare
MPMX20_03426 -1.5 -5.6 Phosphoribosylformylglycinamidine synthase compare
MPMX20_04278 -1.5 -2.9 3-dehydroquinate synthase compare
MPMX20_03753 -1.5 -3.2 Tyrosine recombinase XerD compare
MPMX20_04530 -1.5 -6.2 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_02114 -1.5 -2.5 hypothetical protein compare
MPMX20_03015 -1.5 -9.6 Phosphoglucosamine mutase compare
MPMX20_01567 -1.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_04469 -1.5 -1.9 Adenylate cyclase compare
MPMX20_00739 -1.5 -3.1 Carbamoyl-phosphate synthase small chain compare
MPMX20_03207 -1.5 -3.5 NADH-quinone oxidoreductase subunit M compare
MPMX20_00747 -1.5 -2.5 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_01967 -1.4 -1.6 hypothetical protein compare
MPMX20_01367 -1.4 -3.8 Tol-Pal system protein TolR compare
MPMX20_00093 -1.4 -3.9 Orotate phosphoribosyltransferase compare
MPMX20_02355 -1.4 -2.2 D-alanyl-D-alanine dipeptidase compare
MPMX20_00086 -1.4 -1.9 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_01355 -1.4 -0.8 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_00773 -1.4 -4.8 Catabolite repressor/activator compare
MPMX20_04038 -1.4 -2.7 Glucitol operon repressor compare
MPMX20_04301 -1.4 -1.6 Fe/S biogenesis protein NfuA compare
MPMX20_01029 -1.4 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_01334 -1.4 -3.8 Phosphoglucomutase compare
MPMX20_01368 -1.4 -1.8 hypothetical protein compare
MPMX20_02701 -1.4 -1.2 Fatty acid metabolism regulator protein compare
MPMX20_03354 -1.4 -3.8 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_01349 -1.4 -2.6 Citrate synthase compare
MPMX20_03469 -1.4 -4.3 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
MPMX20_00468 -1.4 -2.7 HTH-type transcriptional regulator UlaR compare
MPMX20_03405 -1.4 -1.4 Protein IscX compare
MPMX20_02116 -1.4 -1.9 hypothetical protein compare
MPMX20_01484 -1.3 -2.0 HTH-type transcriptional regulator RcdA compare
MPMX20_02593 -1.3 -6.6 Regulator of RpoS compare
MPMX20_02668 -1.3 -1.4 hypothetical protein compare
MPMX20_02775 -1.3 -3.3 Carboxy-S-adenosyl-L-methionine synthase compare
MPMX20_04487 -1.3 -4.2 UDP-N-acetylglucosamine 2-epimerase compare
MPMX20_04374 -1.3 -1.7 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_03424 -1.3 -3.4 Quorum-sensing regulator protein G compare
MPMX20_03054 -1.3 -3.5 hypothetical protein compare
MPMX20_03923 -1.3 -2.3 hypothetical protein compare
MPMX20_04464 -1.3 -3.2 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB compare
MPMX20_04518 -1.3 -3.1 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_01434 -1.3 -1.2 putative protein YbiI compare
MPMX20_01281 -1.3 -1.9 hypothetical protein compare
MPMX20_02825 -1.3 -1.6 Cold shock-like protein CspB compare
MPMX20_01765 -1.2 -1.6 Ribonuclease E compare
MPMX20_02477 -1.2 -2.8 Peptide transport system ATP-binding protein SapD compare
MPMX20_03746 -1.2 -1.8 tRNA-Gly compare
MPMX20_03641 -1.2 -2.8 Phosphoadenosine phosphosulfate reductase compare
MPMX20_03267 -1.2 -2.5 Phosphohistidine phosphatase SixA compare
MPMX20_01097 -1.2 -2.3 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03617 -1.2 -2.2 hypothetical protein compare
MPMX20_04484 -1.2 -3.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
MPMX20_02307 -1.2 -1.2 hypothetical protein compare
MPMX20_01570 -1.2 -1.5 Integration host factor subunit beta compare
MPMX20_02215 -1.2 -3.4 hypothetical protein compare
MPMX20_04523 -1.2 -3.7 Acetylornithine deacetylase compare
MPMX20_00643 -1.2 -1.7 HTH-type transcriptional regulator FarR compare
MPMX20_00225 -1.2 -3.9 Phosphoribosylamine--glycine ligase compare
MPMX20_04161 -1.2 -1.8 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
MPMX20_03047 -1.2 -1.7 dCTP deaminase compare
MPMX20_03227 -1.1 -2.6 Phosphate acetyltransferase compare
MPMX20_00213 -1.1 -1.1 Thiazole synthase compare
MPMX20_03509 -1.1 -0.6 hypothetical protein compare
MPMX20_02948 -1.1 -5.3 Transcriptional regulatory protein RcsA compare
MPMX20_02475 -1.1 -2.1 Putrescine export system permease protein SapB compare
MPMX20_02020 -1.1 -4.2 Mannose-6-phosphate isomerase compare
MPMX20_01734 -1.1 -3.4 Lipid A biosynthesis lauroyltransferase compare
MPMX20_01342 -1.1 -1.4 hypothetical protein compare
MPMX20_01942 -1.1 -3.1 HTH-type transcriptional repressor BluR compare
MPMX20_04110 -1.1 -1.8 Nitrogen regulatory protein compare
MPMX20_03016 -1.1 -6.6 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_00537 -1.1 -4.7 Trehalose-6-phosphate hydrolase compare
MPMX20_04522 -1.1 -3.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_02450 -1.1 -1.8 Murein peptide amidase A compare
MPMX20_00928 -1.1 -4.2 Gamma-glutamyl phosphate reductase compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in carbon source experiments

For carbon source 4-Hydroxybenzoic Acid across organisms