Experiment set9S317 for Enterobacter sp. TBS_079

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_00831 -6.8 -4.7 RNA polymerase-binding transcription factor DksA compare
MPMX20_04162 -5.3 -3.7 3-dehydroquinate dehydratase compare
MPMX20_01098 -5.3 -7.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_01355 -5.1 -1.6 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_02494 -5.0 -8.4 Orotidine 5'-phosphate decarboxylase compare
MPMX20_03338 -5.0 -7.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_03771 -5.0 -12.7 D-3-phosphoglycerate dehydrogenase compare
MPMX20_03468 -4.9 -9.9 T-protein compare
MPMX20_00693 -4.9 -10.5 Phosphoserine phosphatase compare
MPMX20_03018 -4.9 -4.7 hypothetical protein compare
MPMX20_00976 -4.8 -3.3 Pyrroline-5-carboxylate reductase compare
MPMX20_03007 -4.8 -9.6 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_01566 -4.7 -14.9 Phosphoserine aminotransferase compare
MPMX20_00773 -4.6 -16.2 Catabolite repressor/activator compare
MPMX20_01549 -4.6 -3.1 ATP-binding/permease protein CydD compare
MPMX20_01349 -4.5 -7.5 Citrate synthase compare
MPMX20_04520 -4.5 -11.7 Argininosuccinate lyase compare
MPMX20_03019 -4.5 -17.8 hypothetical protein compare
MPMX20_04522 -4.4 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_00514 -4.4 -7.3 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_04278 -4.4 -3.0 3-dehydroquinate synthase compare
MPMX20_04496 -4.4 -8.4 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_01741 -4.4 -6.7 Dihydroorotase compare
MPMX20_01567 -4.4 -8.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_04077 -4.4 -14.2 Argininosuccinate synthase compare
MPMX20_00740 -4.3 -11.9 Carbamoyl-phosphate synthase large chain compare
MPMX20_01958 -4.3 -1.3 Fumarase D compare
MPMX20_01548 -4.3 -7.1 putative ABC transporter ATP-binding/permease protein compare
MPMX20_00720 -4.2 -2.2 Chaperone protein DnaK compare
MPMX20_03264 -4.2 -6.0 Chorismate synthase compare
MPMX20_00226 -4.2 -12.7 Bifunctional purine biosynthesis protein PurH compare
MPMX20_01368 -4.2 -7.1 hypothetical protein compare
MPMX20_04499 -4.2 -16.1 Dihydroxy-acid dehydratase compare
MPMX20_01361 -4.2 -9.6 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_01596 -4.1 -24.9 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_01366 -4.1 -6.8 Tol-Pal system protein TolQ compare
MPMX20_01367 -4.1 -10.2 Tol-Pal system protein TolR compare
MPMX20_03247 -4.1 -9.8 Amidophosphoribosyltransferase compare
MPMX20_00225 -4.1 -13.5 Phosphoribosylamine--glycine ligase compare
MPMX20_04442 -4.1 -7.9 Sec-independent protein translocase protein TatC compare
MPMX20_01922 -4.0 -18.9 Phosphoenolpyruvate synthase conserved
MPMX20_03010 -4.0 -2.8 UDP-glucose 4-epimerase compare
MPMX20_01950 -4.0 -5.4 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_00712 -3.9 -12.8 Threonine synthase compare
MPMX20_03681 -3.9 -16.2 Amino-acid acetyltransferase compare
MPMX20_00110 -3.9 -19.9 hypothetical protein compare
MPMX20_03022 -3.9 -2.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04469 -3.9 -4.6 Adenylate cyclase compare
MPMX20_01369 -3.9 -12.5 Tol-Pal system protein TolB compare
MPMX20_00927 -3.9 -14.7 Glutamate 5-kinase compare
MPMX20_00093 -3.9 -9.9 Orotate phosphoribosyltransferase compare
MPMX20_03004 -3.9 -10.4 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_00928 -3.8 -14.2 Gamma-glutamyl phosphate reductase compare
MPMX20_03426 -3.8 -17.9 Phosphoribosylformylglycinamidine synthase compare
MPMX20_01362 -3.8 -6.8 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_04523 -3.8 -9.9 Acetylornithine deacetylase compare
MPMX20_03021 -3.8 -8.0 hypothetical protein compare
MPMX20_03354 -3.7 -10.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_04524 -3.7 -18.4 Phosphoenolpyruvate carboxylase compare
MPMX20_04650 -3.7 -3.6 tRNA modification GTPase MnmE compare
MPMX20_04497 -3.7 -11.0 HTH-type transcriptional regulator GltC compare
MPMX20_00109 -3.7 -22.8 hypothetical protein compare
MPMX20_04119 -3.6 -2.5 DNA polymerase III subunit chi compare
MPMX20_04531 -3.6 -11.1 Cystathionine gamma-synthase compare
MPMX20_03003 -3.6 -12.8 Histidinol-phosphate aminotransferase compare
MPMX20_00739 -3.6 -7.2 Carbamoyl-phosphate synthase small chain compare
MPMX20_04444 -3.6 -2.2 Sec-independent protein translocase protein TatA compare
MPMX20_04443 -3.5 -3.5 Sec-independent protein translocase protein TatB compare
MPMX20_00102 -3.5 -3.4 hypothetical protein compare
MPMX20_01028 -3.5 -3.3 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_02574 -3.4 -5.1 putative intracellular septation protein A compare
MPMX20_03986 -3.4 -2.9 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_00556 -3.4 -11.3 Ornithine carbamoyltransferase subunit F compare
MPMX20_04768 -3.4 -11.6 hypothetical protein compare
MPMX20_04595 -3.4 -2.3 Glutamine synthetase compare
MPMX20_01354 -3.3 -4.2 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_03002 -3.3 -12.5 Histidinol dehydrogenase compare
MPMX20_04189 -3.3 -7.5 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_00544 -3.3 -7.9 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_04275 -3.3 -3.2 Ribulose-phosphate 3-epimerase compare
MPMX20_03382 -3.3 -2.2 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_03132 -3.2 -10.8 Tagatose-6-phosphate kinase compare
MPMX20_03683 -3.2 -3.1 RecBCD enzyme subunit RecB compare
MPMX20_01097 -3.1 -7.1 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03005 -3.1 -10.6 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_00105 -3.1 -12.8 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_04483 -3.1 -4.2 Lipid III flippase compare
MPMX20_03490 -3.0 -7.0 SsrA-binding protein compare
MPMX20_00106 -3.0 -7.8 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_03685 -3.0 -4.6 RecBCD enzyme subunit RecC compare
MPMX20_01607 -3.0 -4.4 Outer membrane protein A compare
MPMX20_00230 -3.0 -7.0 Homoserine O-succinyltransferase compare
MPMX20_03006 -3.0 -11.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_04521 -3.0 -6.8 Acetylglutamate kinase compare
MPMX20_00711 -3.0 -11.9 Homoserine kinase compare
MPMX20_00710 -2.9 -12.4 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_04626 -2.8 -5.0 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01768 -2.8 -4.1 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_02734 -2.8 -12.0 Transcriptional regulator KdgR compare
MPMX20_02826 -2.8 -3.4 Cold shock-like protein CspB compare
MPMX20_00453 -2.7 -2.5 RNA-binding protein Hfq compare
MPMX20_00108 -2.7 -16.1 hypothetical protein compare
MPMX20_01030 -2.6 -8.4 Lon protease compare
MPMX20_04498 -2.6 -10.4 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_04530 -2.5 -9.4 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_01334 -2.5 -9.1 Phosphoglucomutase compare
MPMX20_04489 -2.5 -12.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03001 -2.5 -10.5 ATP phosphoribosyltransferase compare
MPMX20_01984 -2.5 -3.1 Ribonuclease T compare
MPMX20_01901 -2.5 -3.2 Integration host factor subunit alpha compare
MPMX20_00807 -2.5 -4.1 Pyruvate dehydrogenase E1 component compare
MPMX20_00812 -2.5 -8.1 Aconitate hydratase B compare
MPMX20_00899 -2.5 -2.1 Ribonuclease HI compare
MPMX20_00721 -2.5 -4.0 Chaperone protein DnaJ compare
MPMX20_03290 -2.4 -1.9 tRNA-Ala compare
MPMX20_03852 -2.4 -12.8 Cystathionine beta-lyase MetC compare
MPMX20_03407 -2.4 -4.7 Chaperone protein HscA compare
MPMX20_04440 -2.4 -2.3 Transcription antitermination protein RfaH compare
MPMX20_03008 -2.4 -5.9 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03013 -2.4 -12.1 dTDP-glucose 4,6-dehydratase compare
MPMX20_01029 -2.4 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_04197 -2.3 -7.0 Trk system potassium uptake protein TrkA compare
MPMX20_02593 -2.3 -15.0 Regulator of RpoS compare
MPMX20_03209 -2.3 -3.4 NADH-quinone oxidoreductase subunit K compare
MPMX20_00241 -2.2 -10.1 Glucose-6-phosphate isomerase compare
MPMX20_00768 -2.2 -10.5 3-isopropylmalate dehydrogenase compare
MPMX20_03466 -2.2 -7.5 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_00766 -2.2 -7.0 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_04140 -2.2 -7.4 Malate dehydrogenase compare
MPMX20_04133 -2.2 -5.8 Stringent starvation protein A compare
MPMX20_02513 -2.1 -10.6 Tryptophan synthase beta chain compare
MPMX20_04385 -2.1 -8.0 hypothetical protein compare
MPMX20_02591 -2.1 -5.9 DNA-binding protein H-NS compare
MPMX20_01550 -2.1 -2.9 Thioredoxin reductase compare
MPMX20_01370 -2.1 -3.9 Peptidoglycan-associated lipoprotein compare
MPMX20_02646 -2.1 -2.1 hypothetical protein compare
MPMX20_02295 -2.1 -2.3 hypothetical protein compare
MPMX20_00747 -2.1 -4.7 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_04137 -2.1 -4.0 Inner membrane protein YhcB compare
MPMX20_02477 -2.1 -4.8 Peptide transport system ATP-binding protein SapD compare
MPMX20_03012 -2.0 -11.9 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_04279 -2.0 -2.6 Shikimate kinase 1 compare
MPMX20_00767 -2.0 -8.1 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_02475 -1.9 -5.2 Putrescine export system permease protein SapB compare
MPMX20_04110 -1.9 -3.5 Nitrogen regulatory protein compare
MPMX20_03212 -1.9 -5.9 NADH-quinone oxidoreductase subunit H compare
MPMX20_00745 -1.9 -4.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_01351 -1.9 -4.0 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_04557 -1.9 -7.0 Sensor histidine kinase CpxA compare
MPMX20_02511 -1.9 -9.4 Bifunctional protein TrpGD compare
MPMX20_04276 -1.9 -4.9 DNA adenine methylase compare
MPMX20_01969 -1.8 -4.3 Carbonic anhydrase 1 compare
MPMX20_01552 -1.8 -5.4 hypothetical protein compare
MPMX20_02512 -1.8 -8.8 Tryptophan biosynthesis protein TrpCF compare
MPMX20_01382 -1.8 -3.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_03017 -1.8 -6.4 hypothetical protein compare
MPMX20_03215 -1.8 -3.2 NADH-quinone oxidoreductase subunit E compare
MPMX20_02510 -1.8 -10.2 Anthranilate synthase component 1 compare
MPMX20_02514 -1.7 -4.6 Tryptophan synthase alpha chain compare
MPMX20_01353 -1.7 -4.6 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_02672 -1.7 -13.4 hypothetical protein compare
MPMX20_03214 -1.7 -6.6 NADH-quinone oxidoreductase subunit F compare
MPMX20_02766 -1.7 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_01356 -1.7 -5.9 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_01101 -1.7 -3.0 Peptidyl-prolyl cis-trans isomerase B compare
MPMX20_04532 -1.7 -3.0 Met repressor compare
MPMX20_01765 -1.7 -2.5 Ribonuclease E compare
MPMX20_03267 -1.7 -4.3 Phosphohistidine phosphatase SixA compare
MPMX20_04465 -1.6 -4.4 Tyrosine recombinase XerC compare
MPMX20_01156 -1.6 -3.0 hypothetical protein compare
MPMX20_01350 -1.6 -2.7 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_02478 -1.6 -5.6 Putrescine export system ATP-binding protein SapF compare
MPMX20_03390 -1.6 -5.5 Outer membrane protein assembly factor BamB compare
MPMX20_00086 -1.6 -3.0 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_03308 -1.6 -6.0 Cysteine synthase A compare
MPMX20_04670 -1.6 -1.7 hypothetical protein compare
MPMX20_01352 -1.6 -7.4 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_03216 -1.6 -8.4 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_00775 -1.6 -2.6 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_03463 -1.5 -4.2 Ribosomal large subunit pseudouridine synthase D compare
MPMX20_02645 -1.5 -6.9 Ribosome-binding ATPase YchF compare
MPMX20_03248 -1.5 -2.4 Colicin V production protein compare
MPMX20_03310 -1.5 -4.3 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_00626 -1.5 -1.4 hypothetical protein compare
MPMX20_03020 -1.5 -4.5 hypothetical protein compare
MPMX20_04642 -1.5 -1.8 Phosphate import ATP-binding protein PstB compare
MPMX20_03206 -1.5 -6.1 NADH-quinone oxidoreductase subunit N compare
MPMX20_00998 -1.5 -3.6 Sec translocon accessory complex subunit YajC compare
MPMX20_00769 -1.5 -8.1 2-isopropylmalate synthase compare
MPMX20_03207 -1.5 -5.0 NADH-quinone oxidoreductase subunit M compare
MPMX20_03213 -1.5 -7.6 NADH-quinone oxidoreductase subunit G compare
MPMX20_00087 -1.4 -2.0 DNA-directed RNA polymerase subunit omega compare
MPMX20_02549 -1.4 -2.9 hypothetical protein compare
MPMX20_00129 -1.4 -9.0 L-lactate dehydrogenase conserved
MPMX20_03440 -1.4 -4.4 Elongation factor 4 compare
MPMX20_03211 -1.4 -2.5 NADH-quinone oxidoreductase subunit I compare
MPMX20_03218 -1.4 -4.1 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_00537 -1.4 -7.4 Trehalose-6-phosphate hydrolase compare
MPMX20_02344 -1.4 -1.8 hypothetical protein compare
MPMX20_02309 -1.4 -4.8 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium D,L-Lactate in Enterobacter sp. TBS_079

For carbon source Sodium D,L-Lactate across organisms