Experiment set9S311 for Enterobacter sp. TBS_079

Compare to:

D-Cellobiose carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_03354 -7.1 -7.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_03771 -7.0 -6.8 D-3-phosphoglycerate dehydrogenase compare
MPMX20_01566 -6.9 -10.5 Phosphoserine aminotransferase compare
MPMX20_00831 -6.8 -4.7 RNA polymerase-binding transcription factor DksA compare
MPMX20_00928 -6.4 -6.2 Gamma-glutamyl phosphate reductase compare
MPMX20_00693 -6.4 -8.7 Phosphoserine phosphatase compare
MPMX20_03007 -6.4 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_01098 -6.2 -4.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_04077 -6.2 -6.1 Argininosuccinate synthase compare
MPMX20_04521 -6.2 -4.3 Acetylglutamate kinase compare
MPMX20_03426 -6.1 -9.4 Phosphoribosylformylglycinamidine synthase compare
MPMX20_04499 -6.1 -10.2 Dihydroxy-acid dehydratase compare
MPMX20_00927 -6.0 -13.5 Glutamate 5-kinase compare
MPMX20_04520 -6.0 -4.2 Argininosuccinate lyase compare
MPMX20_01370 -5.9 -7.1 Peptidoglycan-associated lipoprotein compare
MPMX20_03681 -5.9 -14.4 Amino-acid acetyltransferase compare
MPMX20_00230 -5.9 -7.1 Homoserine O-succinyltransferase compare
MPMX20_00712 -5.9 -8.1 Threonine synthase compare
MPMX20_03008 -5.9 -7.0 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03264 -5.9 -4.1 Chorismate synthase compare
MPMX20_03004 -5.9 -8.0 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_04523 -5.8 -6.9 Acetylornithine deacetylase compare
MPMX20_03338 -5.8 -5.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_01367 -5.8 -5.6 Tol-Pal system protein TolR compare
MPMX20_00226 -5.7 -6.8 Bifunctional purine biosynthesis protein PurH compare
MPMX20_04531 -5.7 -8.7 Cystathionine gamma-synthase compare
MPMX20_00544 -5.7 -6.8 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_00225 -5.7 -10.2 Phosphoribosylamine--glycine ligase compare
MPMX20_00711 -5.6 -11.5 Homoserine kinase compare
MPMX20_00710 -5.6 -14.0 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_03006 -5.6 -9.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_03002 -5.6 -12.5 Histidinol dehydrogenase compare
MPMX20_00740 -5.5 -6.6 Carbamoyl-phosphate synthase large chain compare
MPMX20_01097 -5.5 -6.6 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03247 -5.5 -8.4 Amidophosphoribosyltransferase compare
MPMX20_03001 -5.4 -12.1 ATP phosphoribosyltransferase compare
MPMX20_03468 -5.4 -7.4 T-protein compare
MPMX20_04162 -5.4 -3.7 3-dehydroquinate dehydratase compare
MPMX20_00768 -5.2 -14.4 3-isopropylmalate dehydrogenase compare
MPMX20_04497 -5.2 -9.4 HTH-type transcriptional regulator GltC compare
MPMX20_03005 -5.2 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_03852 -5.2 -14.2 Cystathionine beta-lyase MetC compare
MPMX20_01366 -5.2 -7.9 Tol-Pal system protein TolQ compare
MPMX20_01596 -5.1 -12.0 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_02514 -5.1 -7.0 Tryptophan synthase alpha chain compare
MPMX20_01369 -5.1 -11.5 Tol-Pal system protein TolB compare
MPMX20_00766 -5.1 -9.2 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_04522 -5.1 -8.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_02494 -5.0 -7.6 Orotidine 5'-phosphate decarboxylase compare
MPMX20_01567 -5.0 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_01368 -4.9 -5.9 hypothetical protein compare
MPMX20_00767 -4.9 -11.4 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_00556 -4.9 -12.1 Ornithine carbamoyltransferase subunit F compare
MPMX20_04498 -4.8 -11.7 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_00093 -4.8 -5.7 Orotate phosphoribosyltransferase compare
MPMX20_04552 -4.8 -5.7 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_03003 -4.8 -11.6 Histidinol-phosphate aminotransferase compare
MPMX20_00739 -4.7 -4.6 Carbamoyl-phosphate synthase small chain compare
MPMX20_01349 -4.7 -6.4 Citrate synthase compare
MPMX20_04189 -4.7 -4.6 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_04496 -4.7 -7.2 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_00241 -4.7 -10.0 Glucose-6-phosphate isomerase compare
MPMX20_01354 -4.6 -4.4 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_01548 -4.6 -4.4 putative ABC transporter ATP-binding/permease protein compare
MPMX20_00976 -4.5 -4.4 Pyrroline-5-carboxylate reductase compare
MPMX20_04278 -4.5 -3.1 3-dehydroquinate synthase compare
MPMX20_03309 -4.4 -3.0 Phosphocarrier protein HPr compare
MPMX20_01741 -4.4 -6.7 Dihydroorotase compare
MPMX20_01901 -4.3 -3.0 Integration host factor subunit alpha compare
MPMX20_02513 -4.3 -14.0 Tryptophan synthase beta chain compare
MPMX20_03018 -4.2 -5.8 hypothetical protein compare
MPMX20_04442 -4.2 -7.6 Sec-independent protein translocase protein TatC compare
MPMX20_03310 -4.0 -4.7 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_00106 -4.0 -2.7 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_02512 -3.9 -12.5 Tryptophan biosynthesis protein TrpCF compare
MPMX20_00102 -3.8 -2.6 hypothetical protein compare
MPMX20_03010 -3.8 -2.6 UDP-glucose 4-epimerase compare
MPMX20_04483 -3.8 -2.6 Lipid III flippase compare
MPMX20_04524 -3.8 -15.0 Phosphoenolpyruvate carboxylase compare
MPMX20_01361 -3.8 -10.2 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_03022 -3.7 -2.6 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03466 -3.7 -8.4 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_01950 -3.7 -5.0 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03019 -3.6 -19.0 hypothetical protein compare
MPMX20_04768 -3.6 -13.3 hypothetical protein compare
MPMX20_01549 -3.6 -4.9 ATP-binding/permease protein CydD compare
MPMX20_01607 -3.6 -6.4 Outer membrane protein A compare
MPMX20_04642 -3.5 -2.4 Phosphate import ATP-binding protein PstB compare
MPMX20_00773 -3.5 -13.6 Catabolite repressor/activator compare
MPMX20_03267 -3.5 -5.9 Phosphohistidine phosphatase SixA compare
MPMX20_04595 -3.4 -2.4 Glutamine synthetase compare
MPMX20_02574 -3.4 -4.0 putative intracellular septation protein A compare
MPMX20_01030 -3.4 -11.3 Lon protease compare
MPMX20_01355 -3.4 -1.6 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_01028 -3.4 -3.3 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_01570 -3.3 -3.7 Integration host factor subunit beta compare
MPMX20_02766 -3.3 -5.0 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_04650 -3.3 -5.0 tRNA modification GTPase MnmE compare
MPMX20_04469 -3.2 -5.8 Adenylate cyclase compare
MPMX20_03407 -3.2 -3.8 Chaperone protein HscA compare
MPMX20_03685 -3.2 -3.1 RecBCD enzyme subunit RecC compare
MPMX20_02510 -3.2 -14.7 Anthranilate synthase component 1 compare
MPMX20_03382 -3.2 -2.2 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_04197 -3.1 -6.0 Trk system potassium uptake protein TrkA compare
MPMX20_03683 -3.1 -3.1 RecBCD enzyme subunit RecB compare
MPMX20_01029 -3.1 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_04443 -3.1 -5.2 Sec-independent protein translocase protein TatB compare
MPMX20_01334 -3.1 -11.6 Phosphoglucomutase compare
MPMX20_03986 -3.1 -4.1 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_01286 -3.0 -2.2 Sec-independent protein translocase protein TatE compare
MPMX20_02477 -3.0 -3.5 Peptide transport system ATP-binding protein SapD compare
MPMX20_04626 -3.0 -5.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_04140 -2.9 -9.7 Malate dehydrogenase compare
MPMX20_03013 -2.9 -12.3 dTDP-glucose 4,6-dehydratase compare
MPMX20_00109 -2.9 -18.0 hypothetical protein compare
MPMX20_02511 -2.9 -11.1 Bifunctional protein TrpGD compare
MPMX20_02476 -2.9 -3.3 Putrescine export system permease protein SapC compare
MPMX20_01382 -2.8 -2.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_00388 -2.8 -1.3 hypothetical protein compare
MPMX20_00708 -2.8 -7.5 Aerobic respiration control protein ArcA compare
MPMX20_00807 -2.8 -2.7 Pyruvate dehydrogenase E1 component compare
MPMX20_02475 -2.7 -6.0 Putrescine export system permease protein SapB compare
MPMX20_04275 -2.7 -3.7 Ribulose-phosphate 3-epimerase compare
MPMX20_01362 -2.7 -6.9 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_00453 -2.7 -2.7 RNA-binding protein Hfq compare
MPMX20_04641 -2.7 -3.6 Phosphate transport system permease protein PstA compare
MPMX20_03705 -2.7 -9.8 Diaminopimelate decarboxylase compare
MPMX20_02826 -2.6 -3.3 Cold shock-like protein CspB compare
MPMX20_00110 -2.6 -16.6 hypothetical protein compare
MPMX20_02591 -2.6 -6.6 DNA-binding protein H-NS compare
MPMX20_04119 -2.6 -3.4 DNA polymerase III subunit chi compare
MPMX20_00812 -2.6 -8.2 Aconitate hydratase B compare
MPMX20_04601 -2.6 -3.4 DNA polymerase I compare
MPMX20_00769 -2.5 -9.1 2-isopropylmalate synthase compare
MPMX20_01551 -2.5 -7.3 Leucine-responsive regulatory protein compare
MPMX20_04110 -2.5 -6.5 Nitrogen regulatory protein compare
MPMX20_01357 -2.5 -4.9 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_03012 -2.5 -12.7 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_03308 -2.5 -7.3 Cysteine synthase A compare
MPMX20_00105 -2.4 -11.4 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_03021 -2.4 -8.9 hypothetical protein compare
MPMX20_00745 -2.4 -4.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_04444 -2.4 -1.9 Sec-independent protein translocase protein TatA compare
MPMX20_03090 -2.4 -1.8 Methionine--tRNA ligase compare
MPMX20_04279 -2.4 -3.7 Shikimate kinase 1 compare
MPMX20_04530 -2.3 -9.5 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_04262 -2.3 -7.6 Acetylornithine/succinyldiaminopimelate aminotransferase compare
MPMX20_01394 -2.3 -9.0 6-phosphogluconolactonase compare
MPMX20_03490 -2.3 -5.7 SsrA-binding protein compare
MPMX20_02768 -2.3 -3.8 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_04529 -2.2 -7.0 5,10-methylenetetrahydrofolate reductase compare
MPMX20_03641 -2.2 -6.7 Phosphoadenosine phosphosulfate reductase compare
MPMX20_03469 -2.1 -7.1 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
MPMX20_00801 -2.1 -4.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_02825 -2.1 -3.8 Cold shock-like protein CspB compare
MPMX20_04557 -2.1 -7.9 Sensor histidine kinase CpxA compare
MPMX20_02593 -2.0 -12.0 Regulator of RpoS compare
MPMX20_03226 -2.0 -4.5 Acetate kinase compare
MPMX20_03218 -2.0 -4.9 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_04028 -2.0 -1.9 hypothetical protein compare
MPMX20_03214 -2.0 -7.9 NADH-quinone oxidoreductase subunit F compare
MPMX20_02769 -2.0 -2.7 putative transcriptional regulatory protein YebC compare
MPMX20_03207 -1.9 -7.5 NADH-quinone oxidoreductase subunit M compare
MPMX20_01734 -1.9 -8.0 Lipid A biosynthesis lauroyltransferase compare
MPMX20_02635 -1.9 -3.0 Release factor glutamine methyltransferase compare
MPMX20_04467 -1.9 -5.7 Diaminopimelate epimerase compare
MPMX20_03227 -1.9 -5.5 Phosphate acetyltransferase compare
MPMX20_01156 -1.9 -4.4 hypothetical protein compare
MPMX20_01552 -1.8 -5.2 hypothetical protein compare
MPMX20_03248 -1.8 -2.6 Colicin V production protein compare
MPMX20_04440 -1.8 -2.1 Transcription antitermination protein RfaH compare
MPMX20_03923 -1.8 -4.0 hypothetical protein compare
MPMX20_02478 -1.8 -6.4 Putrescine export system ATP-binding protein SapF compare
MPMX20_01984 -1.8 -1.8 Ribonuclease T compare
MPMX20_04489 -1.8 -9.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_04133 -1.8 -4.7 Stringent starvation protein A compare
MPMX20_03208 -1.8 -6.2 NADH-quinone oxidoreductase subunit L compare
MPMX20_02344 -1.7 -1.6 hypothetical protein compare
MPMX20_00108 -1.7 -11.8 hypothetical protein compare
MPMX20_04532 -1.7 -2.6 Met repressor compare
MPMX20_03390 -1.7 -7.3 Outer membrane protein assembly factor BamB compare
MPMX20_04393 -1.7 -5.7 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_03706 -1.7 -6.5 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX20_01969 -1.7 -4.4 Carbonic anhydrase 1 compare
MPMX20_03440 -1.6 -4.9 Elongation factor 4 compare
MPMX20_00086 -1.6 -2.1 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_01353 -1.6 -4.5 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_00514 -1.6 -7.1 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_03253 -1.6 -6.6 tRNA pseudouridine synthase A compare
MPMX20_02770 -1.6 -5.4 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_02309 -1.6 -4.8 hypothetical protein compare
MPMX20_01356 -1.6 -6.0 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_03212 -1.6 -4.8 NADH-quinone oxidoreductase subunit H compare
MPMX20_01322 -1.6 -7.6 N-acetylglucosamine repressor compare
MPMX20_01550 -1.5 -2.7 Thioredoxin reductase compare
MPMX20_03209 -1.5 -3.8 NADH-quinone oxidoreductase subunit K compare
MPMX20_04276 -1.5 -5.6 DNA adenine methylase compare
MPMX20_01352 -1.5 -7.4 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_00998 -1.5 -3.4 Sec translocon accessory complex subunit YajC compare
MPMX20_00899 -1.5 -1.8 Ribonuclease HI compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Cellobiose in Enterobacter sp. TBS_079

For carbon source D-Cellobiose across organisms