Experiment set9S310 for Enterobacter sp. TBS_079

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_00831 -6.8 -4.7 RNA polymerase-binding transcription factor DksA compare
MPMX20_01366 -6.7 -4.7 Tol-Pal system protein TolQ compare
MPMX20_00693 -6.4 -8.8 Phosphoserine phosphatase compare
MPMX20_01098 -6.3 -4.4 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_03338 -6.3 -4.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_01566 -6.3 -13.4 Phosphoserine aminotransferase compare
MPMX20_04442 -6.1 -4.2 Sec-independent protein translocase protein TatC compare
MPMX20_03264 -6.0 -4.2 Chorismate synthase compare
MPMX20_01367 -5.9 -5.8 Tol-Pal system protein TolR compare
MPMX20_03771 -5.8 -13.1 D-3-phosphoglycerate dehydrogenase compare
MPMX20_04443 -5.8 -4.0 Sec-independent protein translocase protein TatB compare
MPMX20_03215 -5.8 -4.0 NADH-quinone oxidoreductase subunit E compare
MPMX20_03210 -5.8 -4.0 NADH-quinone oxidoreductase subunit J compare
MPMX20_03218 -5.8 -4.0 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_01368 -5.7 -6.8 hypothetical protein compare
MPMX20_01369 -5.7 -10.2 Tol-Pal system protein TolB compare
MPMX20_04520 -5.6 -10.1 Argininosuccinate lyase compare
MPMX20_01607 -5.6 -3.8 Outer membrane protein A compare
MPMX20_03211 -5.5 -3.8 NADH-quinone oxidoreductase subunit I compare
MPMX20_01370 -5.4 -7.4 Peptidoglycan-associated lipoprotein compare
MPMX20_00927 -5.4 -15.3 Glutamate 5-kinase compare
MPMX20_00928 -5.4 -12.1 Gamma-glutamyl phosphate reductase compare
MPMX20_04162 -5.4 -3.7 3-dehydroquinate dehydratase compare
MPMX20_04499 -5.4 -14.8 Dihydroxy-acid dehydratase compare
MPMX20_03354 -5.4 -12.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_00740 -5.4 -8.2 Carbamoyl-phosphate synthase large chain compare
MPMX20_00225 -5.4 -11.5 Phosphoribosylamine--glycine ligase compare
MPMX20_03214 -5.4 -7.4 NADH-quinone oxidoreductase subunit F compare
MPMX20_00773 -5.4 -12.5 Catabolite repressor/activator compare
MPMX20_04110 -5.4 -3.7 Nitrogen regulatory protein compare
MPMX20_04521 -5.3 -8.2 Acetylglutamate kinase compare
MPMX20_03006 -5.3 -8.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_04077 -5.3 -11.4 Argininosuccinate synthase compare
MPMX20_03007 -5.3 -8.1 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_00556 -5.3 -10.8 Ornithine carbamoyltransferase subunit F compare
MPMX20_03267 -5.3 -5.1 Phosphohistidine phosphatase SixA compare
MPMX20_01334 -5.3 -9.5 Phosphoglucomutase compare
MPMX20_03681 -5.3 -15.2 Amino-acid acetyltransferase compare
MPMX20_01349 -5.3 -5.1 Citrate synthase compare
MPMX20_03008 -5.2 -10.0 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03426 -5.2 -17.0 Phosphoribosylformylglycinamidine synthase compare
MPMX20_03468 -5.2 -8.7 T-protein compare
MPMX20_00745 -5.2 -3.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_03004 -5.2 -11.0 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_04496 -5.2 -7.1 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_03247 -5.1 -9.9 Amidophosphoribosyltransferase compare
MPMX20_01950 -5.1 -3.5 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_02494 -5.1 -7.8 Orotidine 5'-phosphate decarboxylase compare
MPMX20_00093 -5.1 -4.9 Orotate phosphoribosyltransferase compare
MPMX20_03216 -5.1 -11.3 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03019 -5.1 -9.1 hypothetical protein compare
MPMX20_01596 -5.0 -17.6 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_03212 -5.0 -4.9 NADH-quinone oxidoreductase subunit H compare
MPMX20_03209 -5.0 -4.9 NADH-quinone oxidoreductase subunit K compare
MPMX20_01355 -5.0 -1.7 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_00712 -5.0 -12.9 Threonine synthase compare
MPMX20_01548 -5.0 -3.4 putative ABC transporter ATP-binding/permease protein compare
MPMX20_03018 -5.0 -3.4 hypothetical protein compare
MPMX20_03002 -5.0 -14.3 Histidinol dehydrogenase compare
MPMX20_02593 -4.9 -18.2 Regulator of RpoS compare
MPMX20_03208 -4.9 -6.7 NADH-quinone oxidoreductase subunit L compare
MPMX20_00514 -4.9 -3.4 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_00976 -4.9 -3.4 Pyrroline-5-carboxylate reductase compare
MPMX20_04140 -4.8 -9.3 Malate dehydrogenase compare
MPMX20_02591 -4.8 -6.6 DNA-binding protein H-NS compare
MPMX20_03207 -4.8 -4.7 NADH-quinone oxidoreductase subunit M compare
MPMX20_03206 -4.8 -8.7 NADH-quinone oxidoreductase subunit N compare
MPMX20_00226 -4.8 -12.4 Bifunctional purine biosynthesis protein PurH compare
MPMX20_03213 -4.8 -9.7 NADH-quinone oxidoreductase subunit G compare
MPMX20_04535 -4.8 -8.6 HTH-type transcriptional repressor CytR compare
MPMX20_04523 -4.7 -11.5 Acetylornithine deacetylase compare
MPMX20_01567 -4.7 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_01030 -4.6 -10.4 Lon protease compare
MPMX20_01361 -4.6 -8.3 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_01097 -4.6 -8.3 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_00544 -4.6 -9.5 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_03001 -4.6 -13.9 ATP phosphoribosyltransferase compare
MPMX20_03742 -4.6 -10.6 HTH-type transcriptional regulator GalR compare
MPMX20_04469 -4.6 -3.1 Adenylate cyclase compare
MPMX20_03003 -4.5 -12.7 Histidinol-phosphate aminotransferase compare
MPMX20_00110 -4.5 -19.9 hypothetical protein compare
MPMX20_01322 -4.5 -10.5 N-acetylglucosamine repressor compare
MPMX20_01549 -4.5 -3.1 ATP-binding/permease protein CydD compare
MPMX20_04531 -4.5 -13.0 Cystathionine gamma-synthase compare
MPMX20_04444 -4.5 -2.1 Sec-independent protein translocase protein TatA compare
MPMX20_01741 -4.5 -6.2 Dihydroorotase compare
MPMX20_00711 -4.5 -15.3 Homoserine kinase compare
MPMX20_00739 -4.5 -5.3 Carbamoyl-phosphate synthase small chain compare
MPMX20_03310 -4.4 -3.1 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04522 -4.4 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_00109 -4.4 -24.0 hypothetical protein compare
MPMX20_04189 -4.4 -6.0 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_03013 -4.4 -6.0 dTDP-glucose 4,6-dehydratase compare
MPMX20_01354 -4.3 -4.9 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_03308 -4.3 -5.9 Cysteine synthase A compare
MPMX20_02475 -4.3 -3.0 Putrescine export system permease protein SapB compare
MPMX20_04489 -4.3 -19.1 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_02574 -4.3 -3.0 putative intracellular septation protein A compare
MPMX20_01351 -4.3 -5.8 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_04413 -4.2 -15.7 Aerobic C4-dicarboxylate transport protein conserved
MPMX20_02672 -4.2 -24.3 hypothetical protein compare
MPMX20_00241 -4.2 -12.5 Glucose-6-phosphate isomerase compare
MPMX20_03591 -4.1 -10.3 Glucitol operon repressor compare
MPMX20_03217 -4.1 -7.4 NADH-quinone oxidoreductase subunit B compare
MPMX20_04278 -4.1 -4.9 3-dehydroquinate synthase compare
MPMX20_00106 -4.1 -2.8 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_01362 -4.1 -6.2 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_01029 -4.1 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_00105 -4.1 -15.8 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_04467 -4.0 -10.6 Diaminopimelate epimerase compare
MPMX20_02635 -4.0 -3.8 Release factor glutamine methyltransferase compare
MPMX20_00102 -4.0 -2.7 hypothetical protein compare
MPMX20_03012 -4.0 -12.2 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_04482 -4.0 -11.7 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
MPMX20_04276 -4.0 -7.5 DNA adenine methylase compare
MPMX20_03010 -3.9 -2.7 UDP-glucose 4-epimerase compare
MPMX20_04483 -3.9 -2.7 Lipid III flippase compare
MPMX20_03490 -3.9 -7.5 SsrA-binding protein compare
MPMX20_04650 -3.9 -3.8 tRNA modification GTPase MnmE compare
MPMX20_03090 -3.9 -1.9 Methionine--tRNA ligase compare
MPMX20_01028 -3.9 -2.7 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_01734 -3.9 -10.2 Lipid A biosynthesis lauroyltransferase compare
MPMX20_03022 -3.9 -2.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04275 -3.9 -2.7 Ribulose-phosphate 3-epimerase compare
MPMX20_03021 -3.9 -7.4 hypothetical protein compare
MPMX20_02476 -3.8 -2.6 Putrescine export system permease protein SapC compare
MPMX20_03132 -3.8 -10.1 Tagatose-6-phosphate kinase compare
MPMX20_03641 -3.8 -10.1 Phosphoadenosine phosphosulfate reductase compare
MPMX20_01356 -3.8 -11.2 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_00234 -3.8 -13.5 Transcriptional repressor IclR compare
MPMX20_04119 -3.8 -2.6 DNA polymerase III subunit chi compare
MPMX20_02063 -3.8 -13.4 Protein mlc compare
MPMX20_04484 -3.8 -11.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
MPMX20_00230 -3.7 -8.1 Homoserine O-succinyltransferase compare
MPMX20_02478 -3.7 -7.5 Putrescine export system ATP-binding protein SapF compare
MPMX20_00998 -3.7 -4.2 Sec translocon accessory complex subunit YajC compare
MPMX20_03356 -3.7 -16.4 Polyphosphate kinase compare
MPMX20_04485 -3.7 -11.0 dTDP-fucosamine acetyltransferase compare
MPMX20_04626 -3.7 -4.4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01352 -3.7 -10.9 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_02098 -3.7 -11.6 HTH-type transcriptional repressor RspR compare
MPMX20_01019 -3.6 -8.8 Protoheme IX farnesyltransferase compare
MPMX20_04497 -3.6 -8.9 HTH-type transcriptional regulator GltC compare
MPMX20_00768 -3.6 -13.6 3-isopropylmalate dehydrogenase compare
MPMX20_01551 -3.6 -7.6 Leucine-responsive regulatory protein compare
MPMX20_02512 -3.6 -13.8 Tryptophan biosynthesis protein TrpCF compare
MPMX20_03756 -3.6 -6.8 FAD assembly factor SdhE compare
MPMX20_04595 -3.6 -2.5 Glutamine synthetase compare
MPMX20_04197 -3.6 -4.9 Trk system potassium uptake protein TrkA compare
MPMX20_02477 -3.6 -3.4 Peptide transport system ATP-binding protein SapD compare
MPMX20_00710 -3.6 -15.4 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_01353 -3.5 -6.7 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_04480 -3.5 -12.5 UDP-N-acetyl-D-mannosaminuronic acid transferase compare
MPMX20_03685 -3.5 -2.4 RecBCD enzyme subunit RecC compare
MPMX20_04601 -3.5 -3.3 DNA polymerase I compare
MPMX20_04137 -3.4 -5.1 Inner membrane protein YhcB compare
MPMX20_03409 -3.4 -4.0 Iron-binding protein IscA compare
MPMX20_04038 -3.4 -7.9 Glucitol operon repressor compare
MPMX20_03683 -3.4 -2.3 RecBCD enzyme subunit RecB compare
MPMX20_03408 -3.3 -3.2 Co-chaperone protein HscB compare
MPMX20_01570 -3.3 -3.0 Integration host factor subunit beta compare
MPMX20_00766 -3.3 -7.6 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_02513 -3.3 -11.6 Tryptophan synthase beta chain compare
MPMX20_01021 -3.3 -5.8 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_03154 -3.3 -11.1 Inner membrane protein YejM compare
MPMX20_02514 -3.3 -5.0 Tryptophan synthase alpha chain compare
MPMX20_04768 -3.3 -9.4 hypothetical protein compare
MPMX20_03382 -3.3 -2.2 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_00747 -3.3 -6.2 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_03986 -3.2 -3.6 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_04498 -3.2 -10.9 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_02511 -3.2 -11.3 Bifunctional protein TrpGD compare
MPMX20_00767 -3.2 -9.6 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_00133 -3.2 -8.0 Mannitol operon repressor compare
MPMX20_03852 -3.2 -13.9 Cystathionine beta-lyase MetC compare
MPMX20_00980 -3.2 -9.0 hypothetical protein compare
MPMX20_03407 -3.2 -4.7 Chaperone protein HscA compare
MPMX20_04433 -3.1 -18.0 Trk system potassium uptake protein TrkH compare
MPMX20_04279 -3.1 -3.6 Shikimate kinase 1 compare
MPMX20_03466 -3.1 -9.3 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_02701 -3.1 -3.4 Fatty acid metabolism regulator protein compare
MPMX20_00899 -3.1 -2.1 Ribonuclease HI compare
MPMX20_01357 -3.1 -6.3 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_01323 -3.0 -11.1 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX20_04532 -3.0 -3.4 Met repressor compare
MPMX20_00807 -3.0 -2.0 Pyruvate dehydrogenase E1 component compare
MPMX20_01020 -2.9 -2.0 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_04530 -2.9 -9.7 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_01942 -2.8 -8.7 HTH-type transcriptional repressor BluR compare
MPMX20_03121 -2.8 -11.0 HTH-type transcriptional regulator GalS compare
MPMX20_01901 -2.8 -3.3 Integration host factor subunit alpha compare
MPMX20_02734 -2.8 -10.5 Transcriptional regulator KdgR compare
MPMX20_04003 -2.8 -6.7 Putative L-lactate dehydrogenase operon regulatory protein compare
MPMX20_00910 -2.8 -13.7 Acyl-coenzyme A dehydrogenase compare
MPMX20_04136 -2.8 -12.9 Cell division protein ZapE compare
MPMX20_03005 -2.8 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_04385 -2.8 -9.3 hypothetical protein compare
MPMX20_01350 -2.7 -3.9 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_02766 -2.7 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_02770 -2.7 -6.0 Dihydroneopterin triphosphate diphosphatase compare


Specific Phenotypes

For 33 genes in this experiment

For carbon source Sodium Fumarate dibasic in Enterobacter sp. TBS_079

For carbon source Sodium Fumarate dibasic across organisms