Experiment set9S301 for Enterobacter sp. TBS_079

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_03986 -7.2 -5.0 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_01566 -6.7 -11.1 Phosphoserine aminotransferase compare
MPMX20_03771 -6.3 -10.5 D-3-phosphoglycerate dehydrogenase compare
MPMX20_00831 -6.3 -6.1 RNA polymerase-binding transcription factor DksA compare
MPMX20_01366 -6.1 -6.0 Tol-Pal system protein TolQ compare
MPMX20_00693 -6.1 -9.3 Phosphoserine phosphatase compare
MPMX20_00928 -6.0 -8.2 Gamma-glutamyl phosphate reductase compare
MPMX20_00927 -5.9 -13.7 Glutamate 5-kinase compare
MPMX20_04077 -5.9 -8.0 Argininosuccinate synthase compare
MPMX20_03264 -5.8 -4.0 Chorismate synthase compare
MPMX20_03338 -5.7 -5.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_04499 -5.6 -12.0 Dihydroxy-acid dehydratase compare
MPMX20_04496 -5.4 -3.7 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_03681 -5.4 -15.1 Amino-acid acetyltransferase compare
MPMX20_00230 -5.3 -8.9 Homoserine O-succinyltransferase compare
MPMX20_04531 -5.2 -10.5 Cystathionine gamma-synthase compare
MPMX20_00711 -5.2 -12.9 Homoserine kinase compare
MPMX20_00740 -5.1 -8.5 Carbamoyl-phosphate synthase large chain compare
MPMX20_03003 -5.1 -11.3 Histidinol-phosphate aminotransferase compare
MPMX20_01349 -5.1 -4.9 Citrate synthase compare
MPMX20_01567 -5.0 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_03007 -4.9 -8.2 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_01355 -4.9 -1.5 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_00712 -4.9 -12.7 Threonine synthase compare
MPMX20_04520 -4.9 -10.4 Argininosuccinate lyase compare
MPMX20_04522 -4.8 -7.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_03006 -4.8 -9.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_00226 -4.8 -11.1 Bifunctional purine biosynthesis protein PurH compare
MPMX20_01741 -4.7 -4.6 Dihydroorotase compare
MPMX20_00710 -4.7 -17.0 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_03008 -4.7 -9.5 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03468 -4.7 -9.5 T-protein compare
MPMX20_03002 -4.6 -14.5 Histidinol dehydrogenase compare
MPMX20_02494 -4.6 -8.3 Orotidine 5'-phosphate decarboxylase compare
MPMX20_00544 -4.6 -8.8 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_04162 -4.5 -4.4 3-dehydroquinate dehydratase compare
MPMX20_04524 -4.5 -17.2 Phosphoenolpyruvate carboxylase compare
MPMX20_01548 -4.5 -4.4 putative ABC transporter ATP-binding/permease protein compare
MPMX20_03004 -4.4 -11.5 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_01369 -4.4 -12.1 Tol-Pal system protein TolB compare
MPMX20_04768 -4.4 -11.7 hypothetical protein compare
MPMX20_04444 -4.4 -1.8 Sec-independent protein translocase protein TatA compare
MPMX20_04615 -4.4 -11.6 Ribokinase compare
MPMX20_01370 -4.4 -7.5 Peptidoglycan-associated lipoprotein compare
MPMX20_01098 -4.4 -6.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_00739 -4.3 -5.1 Carbamoyl-phosphate synthase small chain compare
MPMX20_04278 -4.3 -3.0 3-dehydroquinate synthase compare
MPMX20_01368 -4.3 -6.5 hypothetical protein compare
MPMX20_04443 -4.2 -4.2 Sec-independent protein translocase protein TatB compare
MPMX20_04189 -4.2 -5.8 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_00976 -4.2 -5.0 Pyrroline-5-carboxylate reductase compare
MPMX20_01362 -4.2 -5.7 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_03001 -4.2 -14.0 ATP phosphoribosyltransferase compare
MPMX20_03426 -4.1 -18.8 Phosphoribosylformylglycinamidine synthase compare
MPMX20_04521 -4.1 -9.2 Acetylglutamate kinase compare
MPMX20_01367 -4.1 -8.8 Tol-Pal system protein TolR compare
MPMX20_01596 -4.1 -22.7 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_04523 -4.1 -9.0 Acetylornithine deacetylase compare
MPMX20_00225 -4.1 -13.2 Phosphoribosylamine--glycine ligase compare
MPMX20_02513 -4.0 -14.4 Tryptophan synthase beta chain compare
MPMX20_00768 -3.9 -14.9 3-isopropylmalate dehydrogenase compare
MPMX20_01029 -3.9 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_04552 -3.9 -7.0 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_01549 -3.9 -4.6 ATP-binding/permease protein CydD compare
MPMX20_00767 -3.9 -12.5 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_00093 -3.8 -9.2 Orotate phosphoribosyltransferase compare
MPMX20_01097 -3.8 -9.1 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03247 -3.8 -10.3 Amidophosphoribosyltransferase compare
MPMX20_03354 -3.8 -10.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_01030 -3.8 -11.5 Lon protease compare
MPMX20_03005 -3.8 -9.9 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_04440 -3.7 -2.2 Transcription antitermination protein RfaH compare
MPMX20_01028 -3.7 -2.6 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04483 -3.7 -2.5 Lipid III flippase compare
MPMX20_03019 -3.7 -19.7 hypothetical protein compare
MPMX20_00766 -3.7 -9.7 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_02203 -3.7 -3.3 hypothetical protein compare
MPMX20_02574 -3.6 -4.3 putative intracellular septation protein A compare
MPMX20_03310 -3.6 -5.0 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04275 -3.6 -2.5 Ribulose-phosphate 3-epimerase compare
MPMX20_02512 -3.6 -13.1 Tryptophan biosynthesis protein TrpCF compare
MPMX20_04498 -3.6 -9.9 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_02591 -3.5 -8.1 DNA-binding protein H-NS compare
MPMX20_04442 -3.5 -6.8 Sec-independent protein translocase protein TatC compare
MPMX20_03018 -3.3 -6.7 hypothetical protein compare
MPMX20_01354 -3.3 -4.4 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_04595 -3.3 -2.3 Glutamine synthetase compare
MPMX20_01950 -3.2 -4.8 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_00556 -3.2 -10.4 Ornithine carbamoyltransferase subunit F compare
MPMX20_03022 -3.2 -5.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03382 -3.1 -2.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_03466 -3.1 -7.3 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_00745 -3.1 -6.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_04616 -3.0 -5.5 Ribose import binding protein RbsB conserved
MPMX20_00899 -2.9 -1.9 Ribonuclease HI compare
MPMX20_00102 -2.9 -4.0 hypothetical protein compare
MPMX20_01361 -2.9 -7.8 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_04626 -2.9 -4.8 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_02766 -2.9 -5.1 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_03685 -2.8 -4.3 RecBCD enzyme subunit RecC compare
MPMX20_00106 -2.8 -7.7 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_03010 -2.8 -6.8 UDP-glucose 4-epimerase compare
MPMX20_03683 -2.8 -4.2 RecBCD enzyme subunit RecB compare
MPMX20_04650 -2.7 -5.4 tRNA modification GTPase MnmE compare
MPMX20_02514 -2.7 -5.4 Tryptophan synthase alpha chain compare
MPMX20_04530 -2.6 -8.9 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_04253 -2.6 -1.0 Malonate decarboxylase acyl carrier protein compare
MPMX20_03641 -2.6 -8.9 Phosphoadenosine phosphosulfate reductase compare
MPMX20_00453 -2.6 -2.5 RNA-binding protein Hfq compare
MPMX20_03852 -2.5 -11.3 Cystathionine beta-lyase MetC compare
MPMX20_01607 -2.5 -5.8 Outer membrane protein A compare
MPMX20_04497 -2.5 -7.6 HTH-type transcriptional regulator GltC compare
MPMX20_00708 -2.5 -6.8 Aerobic respiration control protein ArcA compare
MPMX20_01156 -2.5 -4.1 hypothetical protein compare
MPMX20_03226 -2.3 -4.8 Acetate kinase compare
MPMX20_04619 -2.3 -7.2 D-ribose pyranase compare
MPMX20_03407 -2.2 -4.2 Chaperone protein HscA compare
MPMX20_00769 -2.2 -8.2 2-isopropylmalate synthase compare
MPMX20_02511 -2.2 -9.8 Bifunctional protein TrpGD compare
MPMX20_04276 -2.2 -7.2 DNA adenine methylase compare
MPMX20_04642 -2.2 -2.9 Phosphate import ATP-binding protein PstB compare
MPMX20_03636 -2.1 -4.3 Adenylyl-sulfate kinase compare
MPMX20_03490 -2.1 -5.8 SsrA-binding protein compare
MPMX20_04197 -2.1 -6.6 Trk system potassium uptake protein TrkA compare
MPMX20_02767 -2.1 -4.3 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_00108 -2.1 -14.2 hypothetical protein compare
MPMX20_02826 -2.1 -2.5 Cold shock-like protein CspB compare
MPMX20_03021 -2.1 -8.6 hypothetical protein compare
MPMX20_04279 -2.1 -2.3 Shikimate kinase 1 compare
MPMX20_04618 -2.1 -13.1 Ribose import ATP-binding protein RbsA conserved
MPMX20_02646 -2.1 -2.1 hypothetical protein compare
MPMX20_04617 -2.1 -9.1 Ribose import permease protein RbsC conserved
MPMX20_04668 -2.1 -3.2 hypothetical protein compare
MPMX20_02476 -2.0 -3.1 Putrescine export system permease protein SapC compare
MPMX20_01552 -2.0 -4.7 hypothetical protein compare
MPMX20_04598 -2.0 -5.9 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX20_03213 -1.9 -8.0 NADH-quinone oxidoreductase subunit G compare
MPMX20_03207 -1.9 -7.1 NADH-quinone oxidoreductase subunit M compare
MPMX20_03209 -1.9 -2.5 NADH-quinone oxidoreductase subunit K compare
MPMX20_00086 -1.9 -2.9 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_03217 -1.8 -5.1 NADH-quinone oxidoreductase subunit B compare
MPMX20_04469 -1.8 -2.9 Adenylate cyclase compare
MPMX20_04119 -1.8 -2.3 DNA polymerase III subunit chi compare
MPMX20_04684 -1.8 -7.2 hypothetical protein compare
MPMX20_03267 -1.7 -4.1 Phosphohistidine phosphatase SixA compare
MPMX20_03017 -1.7 -6.7 hypothetical protein compare
MPMX20_03206 -1.7 -7.9 NADH-quinone oxidoreductase subunit N compare
MPMX20_00807 -1.7 -3.5 Pyruvate dehydrogenase E1 component compare
MPMX20_03356 -1.7 -9.6 Polyphosphate kinase compare
MPMX20_01286 -1.7 -1.4 Sec-independent protein translocase protein TatE compare
MPMX20_01334 -1.7 -6.4 Phosphoglucomutase compare
MPMX20_04467 -1.7 -5.1 Diaminopimelate epimerase compare
MPMX20_03210 -1.7 -4.1 NADH-quinone oxidoreductase subunit J compare
MPMX20_01283 -1.6 -3.3 Cold shock-like protein CspE compare
MPMX20_04489 -1.6 -10.1 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03177 -1.6 -5.5 Transcriptional regulatory protein RcsB compare
MPMX20_03742 -1.6 -6.2 HTH-type transcriptional regulator GalR compare
MPMX20_00812 -1.6 -6.7 Aconitate hydratase B compare
MPMX20_01351 -1.6 -3.6 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_00258 -1.6 -3.8 Diacylglycerol kinase compare
MPMX20_00514 -1.6 -6.2 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_01031 -1.5 -2.2 DNA-binding protein HU-beta compare
MPMX20_00480 -1.5 -2.4 50S ribosomal protein L9 compare
MPMX20_00998 -1.5 -2.5 Sec translocon accessory complex subunit YajC compare
MPMX20_04465 -1.5 -3.6 Tyrosine recombinase XerC compare
MPMX20_04640 -1.5 -2.7 Phosphate transport system permease protein PstC compare
MPMX20_03409 -1.5 -2.2 Iron-binding protein IscA compare
MPMX20_03705 -1.5 -6.9 Diaminopimelate decarboxylase compare
MPMX20_02768 -1.5 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_01114 -1.5 -9.3 Putative transcriptional regulator compare
MPMX20_00873 -1.5 -3.4 Protein rof compare
MPMX20_03037 -1.5 -5.4 hypothetical protein compare
MPMX20_02701 -1.5 -2.2 Fatty acid metabolism regulator protein compare
MPMX20_02478 -1.4 -5.9 Putrescine export system ATP-binding protein SapF compare
MPMX20_02997 -1.4 -5.9 Exodeoxyribonuclease I compare
MPMX20_04670 -1.4 -2.0 hypothetical protein compare
MPMX20_02475 -1.4 -3.8 Putrescine export system permease protein SapB compare
MPMX20_00570 -1.4 -8.7 putative BsuMI modification methylase subunit YdiO compare
MPMX20_01382 -1.4 -2.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_02510 -1.4 -8.4 Anthranilate synthase component 1 compare
MPMX20_00747 -1.4 -4.0 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_03212 -1.4 -3.2 NADH-quinone oxidoreductase subunit H compare
MPMX20_04529 -1.4 -4.5 5,10-methylenetetrahydrofolate reductase compare
MPMX20_03753 -1.4 -4.5 Tyrosine recombinase XerD compare
MPMX20_00109 -1.4 -8.9 hypothetical protein compare
MPMX20_03216 -1.3 -7.2 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03390 -1.3 -5.3 Outer membrane protein assembly factor BamB compare
MPMX20_04601 -1.3 -2.2 DNA polymerase I compare
MPMX20_04038 -1.3 -5.0 Glucitol operon repressor compare
MPMX20_01901 -1.3 -1.7 Integration host factor subunit alpha compare
MPMX20_01020 -1.3 -1.3 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_03509 -1.3 -1.4 hypothetical protein compare
MPMX20_04687 -1.3 -6.8 hypothetical protein compare
MPMX20_03248 -1.3 -3.2 Colicin V production protein compare
MPMX20_00721 -1.3 -2.3 Chaperone protein DnaJ compare
MPMX20_03945 -1.3 -3.3 hypothetical protein compare
MPMX20_03643 -1.3 -6.1 Sulfite reductase [NADPH] flavoprotein alpha-component compare
MPMX20_02204 -1.2 -3.8 hypothetical protein compare
MPMX20_02672 -1.2 -9.9 hypothetical protein compare
MPMX20_03211 -1.2 -2.6 NADH-quinone oxidoreductase subunit I compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Ribose in Enterobacter sp. TBS_079

For carbon source D-Ribose across organisms