Experiment set9S298 for Enterobacter sp. TBS_079

Compare to:

D-Raffinose pentahydrate carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_03354 -7.2 -5.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_01566 -6.9 -8.3 Phosphoserine aminotransferase compare
MPMX20_03771 -6.8 -8.1 D-3-phosphoglycerate dehydrogenase compare
MPMX20_00831 -6.6 -4.6 RNA polymerase-binding transcription factor DksA compare
MPMX20_00693 -6.5 -6.3 Phosphoserine phosphatase compare
MPMX20_03002 -6.5 -6.3 Histidinol dehydrogenase compare
MPMX20_03681 -6.3 -11.3 Amino-acid acetyltransferase compare
MPMX20_03007 -6.2 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_03247 -6.2 -4.3 Amidophosphoribosyltransferase compare
MPMX20_00927 -6.1 -12.5 Glutamate 5-kinase compare
MPMX20_00928 -6.1 -7.3 Gamma-glutamyl phosphate reductase compare
MPMX20_01098 -6.1 -4.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_03001 -6.1 -7.2 ATP phosphoribosyltransferase compare
MPMX20_04077 -6.1 -5.9 Argininosuccinate synthase compare
MPMX20_03004 -6.0 -5.8 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_03426 -5.9 -10.6 Phosphoribosylformylglycinamidine synthase compare
MPMX20_00225 -5.9 -8.0 Phosphoribosylamine--glycine ligase compare
MPMX20_00230 -5.8 -6.9 Homoserine O-succinyltransferase compare
MPMX20_00226 -5.8 -4.0 Bifunctional purine biosynthesis protein PurH compare
MPMX20_00710 -5.8 -12.4 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_04521 -5.8 -5.6 Acetylglutamate kinase compare
MPMX20_03008 -5.8 -6.9 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03264 -5.8 -4.0 Chorismate synthase compare
MPMX20_00712 -5.8 -7.9 Threonine synthase compare
MPMX20_04499 -5.7 -11.0 Dihydroxy-acid dehydratase compare
MPMX20_00711 -5.7 -9.6 Homoserine kinase compare
MPMX20_00544 -5.7 -5.6 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_00766 -5.7 -6.8 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_03468 -5.7 -5.5 T-protein compare
MPMX20_03338 -5.6 -5.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_04498 -5.6 -7.7 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_04531 -5.6 -9.3 Cystathionine gamma-synthase compare
MPMX20_04497 -5.6 -8.5 HTH-type transcriptional regulator GltC compare
MPMX20_04520 -5.5 -6.6 Argininosuccinate lyase compare
MPMX20_03003 -5.5 -9.8 Histidinol-phosphate aminotransferase compare
MPMX20_00767 -5.4 -8.3 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_04496 -5.4 -3.7 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_03852 -5.3 -12.9 Cystathionine beta-lyase MetC compare
MPMX20_00740 -5.3 -6.3 Carbamoyl-phosphate synthase large chain compare
MPMX20_00768 -5.3 -13.7 3-isopropylmalate dehydrogenase compare
MPMX20_01097 -5.3 -6.3 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_02494 -5.2 -5.1 Orotidine 5'-phosphate decarboxylase compare
MPMX20_04162 -5.2 -3.6 3-dehydroquinate dehydratase compare
MPMX20_03006 -5.2 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_00556 -5.1 -9.9 Ornithine carbamoyltransferase subunit F compare
MPMX20_01596 -5.1 -9.8 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_01567 -5.0 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_01349 -5.0 -4.8 Citrate synthase compare
MPMX20_01741 -4.9 -3.4 Dihydroorotase compare
MPMX20_03005 -4.9 -7.4 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_04189 -4.9 -3.4 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_04522 -4.8 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_04768 -4.7 -12.2 hypothetical protein compare
MPMX20_04523 -4.6 -10.3 Acetylornithine deacetylase compare
MPMX20_01368 -4.6 -5.8 hypothetical protein compare
MPMX20_00093 -4.5 -6.9 Orotate phosphoribosyltransferase compare
MPMX20_00739 -4.5 -6.1 Carbamoyl-phosphate synthase small chain compare
MPMX20_02514 -4.5 -7.2 Tryptophan synthase alpha chain compare
MPMX20_01548 -4.5 -4.3 putative ABC transporter ATP-binding/permease protein compare
MPMX20_00976 -4.4 -4.3 Pyrroline-5-carboxylate reductase compare
MPMX20_03309 -4.3 -2.9 Phosphocarrier protein HPr compare
MPMX20_01549 -4.2 -2.9 ATP-binding/permease protein CydD compare
MPMX20_02512 -4.2 -12.3 Tryptophan biosynthesis protein TrpCF compare
MPMX20_03310 -4.1 -2.9 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04278 -4.1 -4.0 3-dehydroquinate synthase compare
MPMX20_04650 -4.1 -2.8 tRNA modification GTPase MnmE compare
MPMX20_01369 -4.1 -12.0 Tol-Pal system protein TolB compare
MPMX20_02513 -4.1 -12.9 Tryptophan synthase beta chain compare
MPMX20_01366 -4.0 -7.7 Tol-Pal system protein TolQ compare
MPMX20_04552 -4.0 -6.7 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_01030 -3.9 -10.6 Lon protease compare
MPMX20_04640 -3.8 -3.7 Phosphate transport system permease protein PstC compare
MPMX20_04469 -3.8 -4.5 Adenylate cyclase compare
MPMX20_01354 -3.7 -4.0 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_03705 -3.7 -11.7 Diaminopimelate decarboxylase compare
MPMX20_00102 -3.7 -2.6 hypothetical protein compare
MPMX20_01028 -3.7 -2.5 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04483 -3.7 -2.5 Lipid III flippase compare
MPMX20_03466 -3.6 -8.5 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_03022 -3.6 -2.5 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04119 -3.5 -2.4 DNA polymerase III subunit chi compare
MPMX20_01901 -3.5 -2.7 Integration host factor subunit alpha compare
MPMX20_01367 -3.4 -8.3 Tol-Pal system protein TolR compare
MPMX20_01570 -3.3 -3.6 Integration host factor subunit beta compare
MPMX20_04529 -3.3 -8.4 5,10-methylenetetrahydrofolate reductase compare
MPMX20_01355 -3.3 -1.4 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_01370 -3.3 -5.2 Peptidoglycan-associated lipoprotein compare
MPMX20_04595 -3.3 -2.3 Glutamine synthetase compare
MPMX20_04626 -3.3 -4.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01362 -3.3 -6.2 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_02511 -3.3 -12.1 Bifunctional protein TrpGD compare
MPMX20_03490 -3.2 -6.5 SsrA-binding protein compare
MPMX20_04275 -3.2 -3.1 Ribulose-phosphate 3-epimerase compare
MPMX20_03018 -3.2 -7.1 hypothetical protein compare
MPMX20_02510 -3.1 -15.3 Anthranilate synthase component 1 compare
MPMX20_03408 -3.1 -3.0 Co-chaperone protein HscB compare
MPMX20_04524 -3.1 -13.0 Phosphoenolpyruvate carboxylase compare
MPMX20_01334 -3.1 -11.4 Phosphoglucomutase compare
MPMX20_03683 -3.1 -2.1 RecBCD enzyme subunit RecB compare
MPMX20_01382 -3.1 -2.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_03010 -3.1 -5.8 UDP-glucose 4-epimerase compare
MPMX20_04276 -3.1 -7.8 DNA adenine methylase compare
MPMX20_03382 -3.0 -2.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_03986 -3.0 -5.5 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_00106 -2.9 -7.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_04642 -2.9 -2.8 Phosphate import ATP-binding protein PstB compare
MPMX20_03409 -2.9 -3.3 Iron-binding protein IscA compare
MPMX20_04467 -2.9 -9.9 Diaminopimelate epimerase compare
MPMX20_03685 -2.8 -4.3 RecBCD enzyme subunit RecC compare
MPMX20_04197 -2.8 -5.9 Trk system potassium uptake protein TrkA compare
MPMX20_00769 -2.8 -9.0 2-isopropylmalate synthase compare
MPMX20_00812 -2.8 -7.5 Aconitate hydratase B compare
MPMX20_01029 -2.7 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_02574 -2.7 -4.4 putative intracellular septation protein A compare
MPMX20_01361 -2.6 -8.7 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_00110 -2.6 -15.5 hypothetical protein compare
MPMX20_00537 -2.6 -12.6 Trehalose-6-phosphate hydrolase compare
MPMX20_04530 -2.6 -9.9 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_00773 -2.5 -12.1 Catabolite repressor/activator compare
MPMX20_03019 -2.5 -11.9 hypothetical protein compare
MPMX20_01551 -2.5 -6.3 Leucine-responsive regulatory protein compare
MPMX20_03013 -2.4 -11.4 dTDP-glucose 4,6-dehydratase compare
MPMX20_04279 -2.4 -4.0 Shikimate kinase 1 compare
MPMX20_02591 -2.4 -6.4 DNA-binding protein H-NS compare
MPMX20_03021 -2.4 -8.7 hypothetical protein compare
MPMX20_02646 -2.4 -2.4 hypothetical protein compare
MPMX20_04440 -2.4 -2.2 Transcription antitermination protein RfaH compare
MPMX20_03509 -2.3 -1.9 hypothetical protein compare
MPMX20_00241 -2.3 -9.7 Glucose-6-phosphate isomerase compare
MPMX20_04442 -2.3 -4.5 Sec-independent protein translocase protein TatC compare
MPMX20_01950 -2.3 -3.4 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03440 -2.3 -5.8 Elongation factor 4 compare
MPMX20_02477 -2.3 -4.2 Peptide transport system ATP-binding protein SapD compare
MPMX20_00720 -2.3 -1.2 Chaperone protein DnaK compare
MPMX20_03226 -2.2 -4.4 Acetate kinase compare
MPMX20_04262 -2.2 -3.8 Acetylornithine/succinyldiaminopimelate aminotransferase compare
MPMX20_03469 -2.2 -8.0 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
MPMX20_01734 -2.2 -8.8 Lipid A biosynthesis lauroyltransferase compare
MPMX20_01969 -2.1 -4.5 Carbonic anhydrase 1 compare
MPMX20_01607 -2.1 -4.3 Outer membrane protein A compare
MPMX20_01286 -2.1 -1.6 Sec-independent protein translocase protein TatE compare
MPMX20_02701 -2.1 -3.1 Fatty acid metabolism regulator protein compare
MPMX20_00109 -2.1 -12.4 hypothetical protein compare
MPMX20_00708 -2.1 -5.8 Aerobic respiration control protein ArcA compare
MPMX20_03308 -2.0 -6.3 Cysteine synthase A compare
MPMX20_03706 -2.0 -7.7 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX20_00807 -2.0 -3.3 Pyruvate dehydrogenase E1 component compare
MPMX20_01386 -2.0 -6.8 UDP-glucose 4-epimerase compare
MPMX20_03742 -2.0 -8.0 HTH-type transcriptional regulator GalR compare
MPMX20_02475 -2.0 -5.3 Putrescine export system permease protein SapB compare
MPMX20_04444 -2.0 -2.0 Sec-independent protein translocase protein TatA compare
MPMX20_03227 -1.9 -5.9 Phosphate acetyltransferase compare
MPMX20_03090 -1.9 -1.4 Methionine--tRNA ligase compare
MPMX20_04443 -1.9 -2.8 Sec-independent protein translocase protein TatB compare
MPMX20_00197 -1.9 -2.0 tRNA-Tyr compare
MPMX20_04140 -1.9 -8.0 Malate dehydrogenase compare
MPMX20_00087 -1.8 -2.0 DNA-directed RNA polymerase subunit omega compare
MPMX20_02766 -1.8 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_02287 -1.8 -2.8 hypothetical protein compare
MPMX20_03591 -1.8 -5.6 Glucitol operon repressor compare
MPMX20_03641 -1.8 -5.4 Phosphoadenosine phosphosulfate reductase compare
MPMX20_00514 -1.8 -8.2 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_04557 -1.8 -7.7 Sensor histidine kinase CpxA compare
MPMX20_04641 -1.7 -3.0 Phosphate transport system permease protein PstA compare
MPMX20_02826 -1.7 -2.7 Cold shock-like protein CspB compare
MPMX20_00745 -1.7 -4.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_04133 -1.7 -5.8 Stringent starvation protein A compare
MPMX20_03642 -1.7 -7.2 Sulfite reductase [NADPH] hemoprotein beta-component compare
MPMX20_03012 -1.7 -9.6 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_02476 -1.7 -2.6 Putrescine export system permease protein SapC compare
MPMX20_02645 -1.6 -6.8 Ribosome-binding ATPase YchF compare
MPMX20_03643 -1.6 -6.1 Sulfite reductase [NADPH] flavoprotein alpha-component compare
MPMX20_02478 -1.6 -6.6 Putrescine export system ATP-binding protein SapF compare
MPMX20_02755 -1.6 -4.6 KHG/KDPG aldolase compare
MPMX20_04393 -1.6 -4.8 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_04684 -1.6 -8.7 hypothetical protein compare
MPMX20_01283 -1.6 -3.9 Cold shock-like protein CspE compare
MPMX20_01394 -1.6 -7.2 6-phosphogluconolactonase compare
MPMX20_03390 -1.5 -5.5 Outer membrane protein assembly factor BamB compare
MPMX20_04597 -1.5 -6.6 DNA-binding transcriptional regulator NtrC compare
MPMX20_03407 -1.5 -2.3 Chaperone protein HscA compare
MPMX20_01156 -1.5 -3.2 hypothetical protein compare
MPMX20_02825 -1.5 -2.4 Cold shock-like protein CspB compare
MPMX20_03210 -1.5 -4.6 NADH-quinone oxidoreductase subunit J compare
MPMX20_01101 -1.5 -2.3 Peptidyl-prolyl cis-trans isomerase B compare
MPMX20_01768 -1.5 -2.5 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_02549 -1.5 -3.2 hypothetical protein compare
MPMX20_01552 -1.5 -4.4 hypothetical protein compare
MPMX20_00801 -1.5 -2.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_01722 -1.4 -1.4 putative csgAB operon transcriptional regulatory protein compare
MPMX20_03218 -1.4 -2.8 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_00721 -1.4 -2.9 Chaperone protein DnaJ compare
MPMX20_01586 -1.4 -5.6 Aspartate aminotransferase compare
MPMX20_00775 -1.4 -2.6 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_00747 -1.4 -3.6 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_00998 -1.3 -2.3 Sec translocon accessory complex subunit YajC compare
MPMX20_04110 -1.3 -4.6 Nitrogen regulatory protein compare
MPMX20_04038 -1.3 -4.1 Glucitol operon repressor compare
MPMX20_03463 -1.3 -4.8 Ribosomal large subunit pseudouridine synthase D compare
MPMX20_03216 -1.3 -6.5 NADH-quinone oxidoreductase subunit C/D compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Raffinose pentahydrate in Enterobacter sp. TBS_079

For carbon source D-Raffinose pentahydrate across organisms