Experiment set9S296 for Enterobacter sp. TBS_079

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_03986 -7.4 -5.1 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_03354 -7.2 -7.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_03771 -6.8 -9.4 D-3-phosphoglycerate dehydrogenase compare
MPMX20_01566 -6.8 -11.4 Phosphoserine aminotransferase compare
MPMX20_03007 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_01370 -6.5 -6.3 Peptidoglycan-associated lipoprotein compare
MPMX20_00831 -6.2 -6.0 RNA polymerase-binding transcription factor DksA compare
MPMX20_03004 -6.1 -7.3 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_00712 -6.1 -7.3 Threonine synthase compare
MPMX20_04077 -6.1 -8.4 Argininosuccinate synthase compare
MPMX20_00927 -6.1 -13.6 Glutamate 5-kinase compare
MPMX20_04499 -6.1 -10.1 Dihydroxy-acid dehydratase compare
MPMX20_03264 -6.0 -4.2 Chorismate synthase compare
MPMX20_03006 -5.9 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_03338 -5.9 -5.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00928 -5.9 -9.8 Gamma-glutamyl phosphate reductase compare
MPMX20_03468 -5.8 -6.8 T-protein compare
MPMX20_04531 -5.7 -9.6 Cystathionine gamma-synthase compare
MPMX20_01098 -5.7 -6.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_00693 -5.6 -11.4 Phosphoserine phosphatase compare
MPMX20_00710 -5.6 -15.7 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_00544 -5.6 -7.7 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_03426 -5.5 -16.2 Phosphoribosylformylglycinamidine synthase compare
MPMX20_00226 -5.5 -8.4 Bifunctional purine biosynthesis protein PurH compare
MPMX20_00230 -5.4 -9.1 Homoserine O-succinyltransferase compare
MPMX20_01097 -5.4 -7.4 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_04442 -5.4 -6.4 Sec-independent protein translocase protein TatC compare
MPMX20_04162 -5.4 -3.7 3-dehydroquinate dehydratase compare
MPMX20_01368 -5.4 -7.4 hypothetical protein compare
MPMX20_01369 -5.4 -11.4 Tol-Pal system protein TolB compare
MPMX20_04520 -5.3 -8.2 Argininosuccinate lyase compare
MPMX20_00740 -5.3 -9.6 Carbamoyl-phosphate synthase large chain compare
MPMX20_01349 -5.3 -5.1 Citrate synthase compare
MPMX20_04523 -5.3 -8.8 Acetylornithine deacetylase compare
MPMX20_04522 -5.3 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_02494 -5.3 -6.3 Orotidine 5'-phosphate decarboxylase compare
MPMX20_01366 -5.2 -7.1 Tol-Pal system protein TolQ compare
MPMX20_00711 -5.2 -14.3 Homoserine kinase compare
MPMX20_00225 -5.2 -12.0 Phosphoribosylamine--glycine ligase compare
MPMX20_01567 -5.2 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_04496 -5.1 -6.1 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_03002 -5.1 -13.9 Histidinol dehydrogenase compare
MPMX20_01950 -5.1 -3.5 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_01355 -5.1 -1.5 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_04521 -5.1 -9.1 Acetylglutamate kinase compare
MPMX20_04443 -5.0 -4.8 Sec-independent protein translocase protein TatB compare
MPMX20_01367 -5.0 -8.9 Tol-Pal system protein TolR compare
MPMX20_04524 -4.9 -16.4 Phosphoenolpyruvate carboxylase compare
MPMX20_03008 -4.9 -8.8 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_01596 -4.9 -20.7 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_01354 -4.9 -4.1 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_01741 -4.9 -4.7 Dihydroorotase compare
MPMX20_04189 -4.8 -4.7 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_00556 -4.7 -12.2 Ornithine carbamoyltransferase subunit F compare
MPMX20_03003 -4.7 -13.2 Histidinol-phosphate aminotransferase compare
MPMX20_00739 -4.6 -5.5 Carbamoyl-phosphate synthase small chain compare
MPMX20_04498 -4.6 -11.6 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_04497 -4.6 -10.3 HTH-type transcriptional regulator GltC compare
MPMX20_00976 -4.6 -4.5 Pyrroline-5-carboxylate reductase compare
MPMX20_03001 -4.6 -14.3 ATP phosphoribosyltransferase compare
MPMX20_00165 -4.5 -33.2 Xylose isomerase conserved
MPMX20_03247 -4.5 -10.0 Amidophosphoribosyltransferase compare
MPMX20_01549 -4.5 -3.1 ATP-binding/permease protein CydD compare
MPMX20_03681 -4.5 -17.0 Amino-acid acetyltransferase compare
MPMX20_01548 -4.5 -6.1 putative ABC transporter ATP-binding/permease protein compare
MPMX20_04278 -4.5 -3.1 3-dehydroquinate synthase compare
MPMX20_03005 -4.4 -10.1 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_03018 -4.3 -6.5 hypothetical protein compare
MPMX20_00767 -4.2 -13.2 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_02513 -4.2 -14.6 Tryptophan synthase beta chain compare
MPMX20_00093 -4.2 -9.4 Orotate phosphoribosyltransferase compare
MPMX20_02514 -4.2 -6.9 Tryptophan synthase alpha chain compare
MPMX20_02701 -4.2 -2.8 Fatty acid metabolism regulator protein compare
MPMX20_00766 -4.1 -9.7 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_01607 -4.1 -6.2 Outer membrane protein A compare
MPMX20_00166 -4.1 -15.8 Xylulose kinase conserved
MPMX20_04650 -4.0 -3.9 tRNA modification GTPase MnmE compare
MPMX20_01030 -4.0 -11.4 Lon protease compare
MPMX20_01362 -3.9 -7.0 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_04440 -3.9 -2.2 Transcription antitermination protein RfaH compare
MPMX20_00102 -3.9 -2.7 hypothetical protein compare
MPMX20_04552 -3.9 -7.4 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_01028 -3.9 -2.7 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_01361 -3.9 -10.5 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_03022 -3.8 -2.6 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04768 -3.8 -10.2 hypothetical protein compare
MPMX20_00768 -3.8 -12.0 3-isopropylmalate dehydrogenase compare
MPMX20_04483 -3.8 -2.6 Lipid III flippase compare
MPMX20_04275 -3.8 -2.6 Ribulose-phosphate 3-epimerase compare
MPMX20_02574 -3.8 -4.4 putative intracellular septation protein A compare
MPMX20_03466 -3.7 -10.8 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_04469 -3.7 -5.1 Adenylate cyclase compare
MPMX20_00106 -3.7 -5.1 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_03310 -3.7 -6.1 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_02512 -3.7 -14.4 Tryptophan biosynthesis protein TrpCF compare
MPMX20_03010 -3.6 -4.9 UDP-glucose 4-epimerase compare
MPMX20_00197 -3.5 -2.5 tRNA-Tyr compare
MPMX20_04595 -3.5 -2.4 Glutamine synthetase compare
MPMX20_03685 -3.5 -2.4 RecBCD enzyme subunit RecC compare
MPMX20_04626 -3.4 -4.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_03852 -3.4 -13.4 Cystathionine beta-lyase MetC compare
MPMX20_02768 -3.4 -4.4 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_00453 -3.4 -2.9 RNA-binding protein Hfq compare
MPMX20_01984 -3.3 -3.3 Ribonuclease T compare
MPMX20_03382 -3.3 -2.2 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_04668 -3.2 -3.1 hypothetical protein compare
MPMX20_00161 -3.2 -12.8 Xylose operon regulatory protein conserved
MPMX20_03019 -3.2 -16.2 hypothetical protein compare
MPMX20_03309 -3.1 -4.0 Phosphocarrier protein HPr compare
MPMX20_03090 -3.1 -1.8 Methionine--tRNA ligase compare
MPMX20_03683 -3.1 -4.2 RecBCD enzyme subunit RecB compare
MPMX20_04276 -3.0 -8.1 DNA adenine methylase compare
MPMX20_01286 -3.0 -2.4 Sec-independent protein translocase protein TatE compare
MPMX20_04197 -2.9 -6.8 Trk system potassium uptake protein TrkA compare
MPMX20_02511 -2.9 -10.8 Bifunctional protein TrpGD compare
MPMX20_03490 -2.9 -7.9 SsrA-binding protein compare
MPMX20_01029 -2.8 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_03267 -2.7 -4.0 Phosphohistidine phosphatase SixA compare
MPMX20_04444 -2.7 -2.1 Sec-independent protein translocase protein TatA compare
MPMX20_02591 -2.7 -4.9 DNA-binding protein H-NS compare
MPMX20_03013 -2.7 -12.7 dTDP-glucose 4,6-dehydratase compare
MPMX20_01972 -2.6 -1.3 tRNA-Val compare
MPMX20_03021 -2.6 -9.9 hypothetical protein compare
MPMX20_03218 -2.5 -5.0 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_01334 -2.5 -7.9 Phosphoglucomutase compare
MPMX20_01382 -2.4 -3.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_03012 -2.4 -13.0 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_01552 -2.4 -5.6 hypothetical protein compare
MPMX20_02672 -2.4 -17.8 hypothetical protein compare
MPMX20_04119 -2.4 -2.4 DNA polymerase III subunit chi compare
MPMX20_02757 -2.3 -5.0 Glucose-6-phosphate 1-dehydrogenase compare
MPMX20_02510 -2.3 -14.2 Anthranilate synthase component 1 compare
MPMX20_03705 -2.3 -9.6 Diaminopimelate decarboxylase compare
MPMX20_04140 -2.3 -9.5 Malate dehydrogenase compare
MPMX20_04467 -2.3 -6.8 Diaminopimelate epimerase compare
MPMX20_03463 -2.3 -7.8 Ribosomal large subunit pseudouridine synthase D compare
MPMX20_00769 -2.2 -8.1 2-isopropylmalate synthase compare
MPMX20_03407 -2.2 -4.6 Chaperone protein HscA compare
MPMX20_03390 -2.2 -8.9 Outer membrane protein assembly factor BamB compare
MPMX20_00807 -2.2 -3.6 Pyruvate dehydrogenase E1 component compare
MPMX20_04038 -2.1 -6.8 Glucitol operon repressor compare
MPMX20_02475 -2.1 -4.9 Putrescine export system permease protein SapB compare
MPMX20_02477 -2.1 -4.9 Peptide transport system ATP-binding protein SapD compare
MPMX20_02826 -2.1 -3.1 Cold shock-like protein CspB compare
MPMX20_02476 -2.1 -2.7 Putrescine export system permease protein SapC compare
MPMX20_01550 -2.0 -2.7 Thioredoxin reductase compare
MPMX20_04530 -2.0 -7.2 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_00773 -2.0 -9.2 Catabolite repressor/activator compare
MPMX20_01901 -2.0 -2.6 Integration host factor subunit alpha compare
MPMX20_02766 -2.0 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_00086 -2.0 -2.8 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_00708 -2.0 -5.9 Aerobic respiration control protein ArcA compare
MPMX20_00109 -1.9 -11.5 hypothetical protein compare
MPMX20_04133 -1.9 -6.9 Stringent starvation protein A compare
MPMX20_04641 -1.8 -3.2 Phosphate transport system permease protein PstA compare
MPMX20_02393 -1.8 -1.1 hypothetical protein compare
MPMX20_00721 -1.8 -3.4 Chaperone protein DnaJ compare
MPMX20_00745 -1.8 -4.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_03629 -1.8 -4.9 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_03217 -1.8 -5.1 NADH-quinone oxidoreductase subunit B compare
MPMX20_04393 -1.7 -5.6 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_02549 -1.7 -4.5 hypothetical protein compare
MPMX20_04532 -1.7 -3.2 Met repressor compare
MPMX20_03209 -1.7 -3.0 NADH-quinone oxidoreductase subunit K compare
MPMX20_04066 -1.7 -1.9 ATP-dependent RNA helicase DeaD compare
MPMX20_00105 -1.6 -5.9 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_03580 -1.6 -5.9 Protein RecA compare
MPMX20_03213 -1.6 -8.7 NADH-quinone oxidoreductase subunit G compare
MPMX20_04306 -1.6 -3.6 Glycerol-3-phosphate regulon repressor compare
MPMX20_00801 -1.6 -3.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_00110 -1.6 -8.3 hypothetical protein compare
MPMX20_03469 -1.6 -6.1 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
MPMX20_03308 -1.6 -6.1 Cysteine synthase A compare
MPMX20_03206 -1.6 -7.4 NADH-quinone oxidoreductase subunit N compare
MPMX20_03706 -1.5 -5.6 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX20_02287 -1.5 -2.3 hypothetical protein compare
MPMX20_00998 -1.5 -2.1 Sec translocon accessory complex subunit YajC compare
MPMX20_00163 -1.5 -8.4 Xylose import ATP-binding protein XylG conserved
MPMX20_00164 -1.5 -12.7 D-xylose-binding periplasmic protein conserved
MPMX20_04279 -1.5 -2.4 Shikimate kinase 1 compare
MPMX20_00537 -1.5 -8.3 Trehalose-6-phosphate hydrolase compare
MPMX20_02007 -1.5 -3.0 Ion-translocating oxidoreductase complex subunit G compare
MPMX20_03753 -1.5 -4.5 Tyrosine recombinase XerD compare
MPMX20_02496 -1.4 -1.5 Lipopolysaccharide assembly protein A compare
MPMX20_00108 -1.4 -8.2 hypothetical protein compare
MPMX20_00452 -1.4 -5.6 tRNA dimethylallyltransferase compare
MPMX20_03923 -1.4 -2.8 hypothetical protein compare
MPMX20_04489 -1.4 -6.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_00812 -1.4 -5.8 Aconitate hydratase B compare
MPMX20_04110 -1.4 -4.4 Nitrogen regulatory protein compare
MPMX20_03214 -1.4 -5.7 NADH-quinone oxidoreductase subunit F compare
MPMX20_04670 -1.4 -1.5 hypothetical protein compare
MPMX20_03591 -1.4 -4.9 Glucitol operon repressor compare
MPMX20_00388 -1.4 -0.9 hypothetical protein compare
MPMX20_02770 -1.4 -2.7 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_02767 -1.3 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_04465 -1.3 -3.3 Tyrosine recombinase XerC compare
MPMX20_00241 -1.3 -5.9 Glucose-6-phosphate isomerase compare
MPMX20_01114 -1.3 -8.2 Putative transcriptional regulator compare
MPMX20_01734 -1.3 -5.0 Lipid A biosynthesis lauroyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Xylose in Enterobacter sp. TBS_079

For carbon source D-Xylose across organisms