Experiment set9S178 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Raffinose pentahydrate 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS07195 -5.3 -5.1 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS09675 -5.1 -8.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS00635 -4.9 -16.6 substrate-binding domain-containing protein compare
HMPREF1058_RS15435 -4.8 -8.1 hypothetical protein compare
HMPREF1058_RS13970 -4.7 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS11270 -4.4 -12.4 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS00615 -4.4 -19.5 TonB-dependent receptor compare
HMPREF1058_RS07170 -4.4 -12.2 tryptophan synthase subunit beta compare
HMPREF1058_RS17940 -4.4 -6.6 alpha-amylase compare
HMPREF1058_RS07200 -4.4 -11.5 tryptophan synthase subunit alpha compare
HMPREF1058_RS17935 -4.3 -10.4 glycosyltransferase compare
HMPREF1058_RS07190 -4.3 -8.1 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS03910 -4.2 -7.6 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS12780 -4.2 -12.5 M20 family metallo-hydrolase compare
HMPREF1058_RS08830 -4.0 -9.9 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS08025 -4.0 -9.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS12115 -3.9 -10.8 acetylglutamate kinase compare
HMPREF1058_RS08840 -3.9 -13.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS08645 -3.9 -14.9 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08650 -3.9 -10.3 glutamate 5-kinase compare
HMPREF1058_RS07185 -3.9 -12.6 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS06180 -3.9 -8.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS14795 -3.9 -8.2 prephenate dehydratase compare
HMPREF1058_RS06310 -3.8 -6.8 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS15875 -3.8 -11.6 histidinol dehydrogenase compare
HMPREF1058_RS15075 -3.8 -13.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS09585 -3.8 -18.5 argininosuccinate lyase compare
HMPREF1058_RS06170 -3.8 -7.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS17815 -3.8 -5.1 MFS transporter compare
HMPREF1058_RS13795 -3.7 -11.1 DUF4954 family protein compare
HMPREF1058_RS14720 -3.7 -18.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS04375 -3.7 -8.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS12105 -3.7 -6.1 shikimate kinase compare
HMPREF1058_RS15870 -3.7 -10.2 ATP phosphoribosyltransferase compare
HMPREF1058_RS10080 -3.6 -18.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS08845 -3.6 -12.7 argininosuccinate synthase compare
HMPREF1058_RS16730 -3.6 -4.3 chorismate synthase compare
HMPREF1058_RS03970 -3.6 -3.5 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS10995 -3.6 -9.4 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS15885 -3.5 -9.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS10075 -3.5 -15.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS16760 -3.4 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS06195 -3.4 -7.3 diaminopimelate decarboxylase compare
HMPREF1058_RS14790 -3.4 -15.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS02755 -3.4 -3.3 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS14555 -3.4 -3.9 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS02800 -3.4 -8.3 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS00630 -3.3 -13.0 carbohydrate kinase compare
HMPREF1058_RS14785 -3.3 -9.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS07175 -3.3 -13.0 anthranilate synthase component I family protein compare
HMPREF1058_RS08640 -3.3 -6.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS11730 -3.3 -2.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS17080 -3.2 -3.8 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14610 -3.2 -16.9 adenylosuccinate synthase compare
HMPREF1058_RS08850 -3.2 -9.2 N-acetyltransferase compare
HMPREF1058_RS17155 -3.2 -4.3 dCMP deaminase family protein compare
HMPREF1058_RS14725 -3.2 -12.7 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS17050 -3.2 -8.7 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS15395 -3.2 -2.2 dihydroorotase compare
HMPREF1058_RS17060 -3.1 -7.7 HAD family hydrolase compare
HMPREF1058_RS00590 -3.1 -5.1 hypothetical protein compare
HMPREF1058_RS03800 -3.1 -9.9 serine hydroxymethyltransferase compare
HMPREF1058_RS14565 -3.1 -15.3 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS15880 -3.1 -12.2 histidinol-phosphate transaminase compare
HMPREF1058_RS03085 -3.1 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS14730 -3.1 -12.2 threonine synthase compare
HMPREF1058_RS17885 -3.1 -15.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS14920 -3.0 -12.9 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS02750 -3.0 -3.6 BamA/TamA family outer membrane protein compare
HMPREF1058_RS02170 -3.0 -7.2 hypothetical protein compare
HMPREF1058_RS14550 -3.0 -13.7 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14545 -3.0 -9.7 2-isopropylmalate synthase compare
HMPREF1058_RS03000 -3.0 -11.6 IMP dehydrogenase compare
HMPREF1058_RS07955 -2.9 -16.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS06175 -2.9 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS16820 -2.8 -11.5 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS06225 -2.8 -3.3 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS04065 -2.8 -1.9 VWA domain-containing protein compare
HMPREF1058_RS14770 -2.8 -8.5 prephenate dehydrogenase compare
HMPREF1058_RS12110 -2.8 -13.8 biosynthetic arginine decarboxylase compare
HMPREF1058_RS06330 -2.8 -5.5 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS00625 -2.8 -14.0 MFS transporter compare
HMPREF1058_RS16815 -2.7 -12.8 dihydroxy-acid dehydratase compare
HMPREF1058_RS17040 -2.7 -6.0 NTP transferase domain-containing protein compare
HMPREF1058_RS14560 -2.7 -10.7 2-isopropylmalate synthase compare
HMPREF1058_RS12505 -2.7 -6.4 RNA polymerase factor sigma-54 compare
HMPREF1058_RS14005 -2.7 -3.2 3-dehydroquinate synthase compare
HMPREF1058_RS08325 -2.7 -8.0 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS05780 -2.7 -10.0 PD40 domain-containing protein compare
HMPREF1058_RS10720 -2.7 -9.6 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS08855 -2.7 -8.8 arginine repressor compare
HMPREF1058_RS02220 -2.6 -4.6 branched-chain amino acid aminotransferase compare
HMPREF1058_RS00620 -2.6 -13.1 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS15665 -2.5 -8.0 MFS transporter compare
HMPREF1058_RS13655 -2.5 -12.9 cardiolipin synthase compare
HMPREF1058_RS04295 -2.5 -6.4 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS09685 -2.5 -13.2 tetratricopeptide repeat protein compare
HMPREF1058_RS06325 -2.5 -4.0 electron transport complex subunit E compare
HMPREF1058_RS10820 -2.4 -15.4 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS16835 -2.4 -7.6 ketol-acid reductoisomerase compare
HMPREF1058_RS10955 -2.4 -7.0 phosphatase PAP2 family protein compare
HMPREF1058_RS00560 -2.4 -3.6 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS14490 -2.4 -11.4 S9 family peptidase compare
HMPREF1058_RS17205 -2.3 -2.7 DUF4199 domain-containing protein compare
HMPREF1058_RS06190 -2.3 -8.0 aspartate kinase compare
HMPREF1058_RS17055 -2.3 -6.2 flippase-like domain-containing protein compare
HMPREF1058_RS00700 -2.3 -10.1 DUF4831 family protein compare
HMPREF1058_RS09610 -2.3 -7.6 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS00565 -2.3 -9.9 hemolysin III family protein compare
HMPREF1058_RS17045 -2.3 -4.6 hypothetical protein compare
HMPREF1058_RS07440 -2.2 -9.1 aspartate--ammonia ligase compare
HMPREF1058_RS16750 -2.2 -3.2 shikimate dehydrogenase compare
HMPREF1058_RS07180 -2.2 -5.5 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS04070 -2.2 -3.3 hypothetical protein compare
HMPREF1058_RS04080 -2.2 -2.1 AAA family ATPase compare
HMPREF1058_RS16825 -2.2 -6.5 acetolactate synthase small subunit compare
HMPREF1058_RS04045 -2.2 -4.3 tetratricopeptide repeat protein compare
HMPREF1058_RS12490 -2.2 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS11490 -2.2 -5.0 redox-regulated ATPase YchF compare
HMPREF1058_RS02065 -2.1 -2.7 hypothetical protein compare
HMPREF1058_RS14930 -2.1 -9.1 AraC family transcriptional regulator compare
HMPREF1058_RS17075 -2.0 -10.2 inositol-3-phosphate synthase compare
HMPREF1058_RS10835 -2.0 -6.1 UDP-galactopyranose mutase compare
HMPREF1058_RS00595 -2.0 -4.0 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS11040 -2.0 -5.6 polysaccharide deacetylase family protein compare
HMPREF1058_RS06340 -2.0 -4.8 electron transport complex subunit RsxC compare
HMPREF1058_RS04075 -2.0 -1.9 DUF58 domain-containing protein compare
HMPREF1058_RS08835 -2.0 -9.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS11625 -2.0 -13.2 S41 family peptidase compare
HMPREF1058_RS16500 -2.0 -3.9 OadG family protein compare
HMPREF1058_RS07655 -2.0 -3.0 hypothetical protein compare
HMPREF1058_RS07040 -2.0 -10.1 tetratricopeptide repeat protein compare
HMPREF1058_RS17035 -2.0 -8.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS11535 -2.0 -7.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS18400 -2.0 -5.0 RidA family protein compare
HMPREF1058_RS03535 -2.0 -1.3 UvrD-helicase domain-containing protein compare
HMPREF1058_RS06335 -1.9 -7.2 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS15895 -1.9 -4.2 transcriptional repressor compare
HMPREF1058_RS18265 -1.9 -2.6 aspartate 1-decarboxylase compare
HMPREF1058_RS04300 -1.9 -5.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS05925 -1.9 -2.5 DUF5024 domain-containing protein compare
HMPREF1058_RS01745 -1.9 -4.3 PorT family protein compare
HMPREF1058_RS06560 -1.8 -8.3 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS01650 -1.8 -3.6 hypothetical protein compare
HMPREF1058_RS06165 -1.8 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS08060 -1.8 -6.6 hypothetical protein compare
HMPREF1058_RS01265 -1.7 -3.1 FHA domain-containing protein compare
HMPREF1058_RS14215 -1.7 -4.6 (d)CMP kinase compare
HMPREF1058_RS11930 -1.7 -4.0 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS16505 -1.7 -5.5 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS04050 -1.7 -2.0 protein BatD compare
HMPREF1058_RS09745 -1.7 -7.2 glycosyltransferase compare
HMPREF1058_RS16495 -1.6 -2.1 biotin/lipoyl-binding protein compare
HMPREF1058_RS16845 -1.6 -4.8 SurA N-terminal domain-containing protein compare
HMPREF1058_RS13735 -1.6 -2.9 hypothetical protein compare
HMPREF1058_RS09750 -1.6 -4.3 glycosyltransferase compare
HMPREF1058_RS10840 -1.6 -2.0 hypothetical protein compare
HMPREF1058_RS02405 -1.5 -10.3 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS11890 -1.5 -3.6 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS05140 -1.5 -2.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS06350 -1.5 -4.1 SoxR reducing system RseC family protein compare
HMPREF1058_RS15520 -1.5 -2.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS01665 -1.5 -3.5 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS14200 -1.5 -9.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS03755 -1.5 -7.9 DUF3078 domain-containing protein compare
HMPREF1058_RS07065 -1.5 -6.7 OmpA family protein compare
HMPREF1058_RS15975 -1.4 -6.4 saccharopine dehydrogenase family protein compare
HMPREF1058_RS11925 -1.4 -2.5 DUF2975 domain-containing protein compare
HMPREF1058_RS02115 -1.4 -9.0 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS02410 -1.4 -9.6 methylmalonyl-CoA mutase compare
HMPREF1058_RS05805 -1.4 -9.0 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS13730 -1.4 -3.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS12070 -1.4 -3.3 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS06615 -1.4 -4.8 GDP-mannose 4,6-dehydratase compare
HMPREF1058_RS09690 -1.3 -8.9 DUF4369 domain-containing protein compare
HMPREF1058_RS15575 -1.3 -5.4 DUF4421 domain-containing protein compare
HMPREF1058_RS18205 -1.3 -2.8 ferrous iron transport protein B compare
HMPREF1058_RS0119615 -1.3 -2.6 hypothetical protein compare
HMPREF1058_RS11205 -1.3 -1.2 radical SAM protein compare
HMPREF1058_RS07840 -1.3 -2.4 hypothetical protein compare
HMPREF1058_RS09445 -1.3 -1.5 tyrosine-type recombinase/integrase compare
HMPREF1058_RS04025 -1.3 -6.3 hypothetical protein compare
HMPREF1058_RS11275 -1.3 -3.2 hypothetical protein compare
HMPREF1058_RS14605 -1.2 -3.2 transcriptional repressor compare
HMPREF1058_RS06610 -1.2 -3.8 GDP-L-fucose synthase compare
HMPREF1058_RS16255 -1.2 -4.6 isochorismate synthase compare
HMPREF1058_RS17130 -1.2 -1.4 tetratricopeptide repeat protein compare
HMPREF1058_RS09890 -1.2 -1.2 DUF3876 domain-containing protein compare
HMPREF1058_RS08295 -1.2 -4.4 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS02105 -1.1 -5.5 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS07075 -1.1 -4.5 SPOR domain-containing protein compare
HMPREF1058_RS14505 -1.1 -3.3 mechanosensitive ion channel compare
HMPREF1058_RS05145 -1.1 -4.5 ATP-binding protein compare
HMPREF1058_RS11915 -1.1 -1.6 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11815 -1.1 -4.6 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS01405 -1.1 -5.3 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS09680 -1.1 -3.2 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS01210 -1.1 -6.9 endopeptidase La compare
HMPREF1058_RS20495 -1.1 -3.1 hypothetical protein compare
HMPREF1058_RS04035 -1.1 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source D-Raffinose pentahydrate across organisms