Experiment set9S161 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Glucose 5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS03130 +3.2 4.7 DUF177 domain-containing protein compare
HMPREF1058_RS14270 +2.9 11.4 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS10160 +2.0 1.9 hypothetical protein compare
HMPREF1058_RS02150 +1.8 12.8 DUF3440 domain-containing protein compare
HMPREF1058_RS14130 +1.8 8.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS12035 +1.8 6.1 phosphate butyryltransferase compare
HMPREF1058_RS09860 +1.8 2.5 DUF3408 domain-containing protein compare
HMPREF1058_RS12805 +1.8 10.4 RNA polymerase sigma factor compare
HMPREF1058_RS02155 +1.7 8.4 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS04115 +1.7 4.0 CinA family protein compare
HMPREF1058_RS03215 +1.7 9.4 AhpC/TSA family protein compare
HMPREF1058_RS09440 +1.7 6.1 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS15045 +1.6 11.7 family 20 glycosylhydrolase compare
HMPREF1058_RS09905 +1.6 3.9 conjugative transposon protein TraK compare
HMPREF1058_RS17880 +1.6 2.8 diacylglycerol kinase family protein compare
HMPREF1058_RS03540 +1.6 2.2 sensor histidine kinase compare
HMPREF1058_RS01240 +1.5 7.8 DEAD/DEAH box helicase compare
HMPREF1058_RS15740 +1.5 4.5 hypothetical protein compare
HMPREF1058_RS03690 +1.5 2.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS18570 +1.5 4.3 GNAT family N-acetyltransferase compare
HMPREF1058_RS09990 +1.5 8.3 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS07960 +1.4 11.2 response regulator compare
HMPREF1058_RS17805 +1.4 4.9 HAD family hydrolase compare
HMPREF1058_RS18235 +1.4 5.0 3'-5' exonuclease compare
HMPREF1058_RS21575 +1.4 1.3 mobilization protein compare
HMPREF1058_RS12810 +1.4 5.2 VanZ family protein compare
HMPREF1058_RS02490 +1.3 2.8 four helix bundle protein compare
HMPREF1058_RS10765 +1.3 9.0 ribonuclease III compare
HMPREF1058_RS17170 +1.3 5.5 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS16235 +1.3 5.0 AMP-binding protein compare
HMPREF1058_RS15330 +1.3 3.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS15060 +1.3 7.4 outer membrane beta-barrel protein compare
HMPREF1058_RS07620 +1.3 9.0 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS06520 +1.2 5.3 capsular polysaccharide synthesis protein compare
HMPREF1058_RS18565 +1.2 1.7 hypothetical protein compare
HMPREF1058_RS09980 +1.2 2.0 PcfK-like family protein compare
HMPREF1058_RS16775 +1.2 5.2 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS05940 +1.1 4.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS03770 +1.1 6.2 RNA polymerase sigma factor compare
HMPREF1058_RS18560 +1.1 2.8 recombination protein RecR compare
HMPREF1058_RS15860 +1.1 1.8 Dabb family protein compare
HMPREF1058_RS01820 +1.1 1.2 hypothetical protein compare
HMPREF1058_RS15525 +1.1 1.4 hypothetical protein compare
HMPREF1058_RS02145 +1.1 3.8 hypothetical protein compare
HMPREF1058_RS01725 +1.1 5.1 peptide MFS transporter compare
HMPREF1058_RS03505 +1.1 4.9 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS06540 +1.1 2.0 hypothetical protein compare
HMPREF1058_RS03950 +1.1 3.3 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS02000 +1.0 3.9 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS01930 +1.0 6.0 type II toxin-antitoxin system HigB family toxin compare
HMPREF1058_RS06505 +1.0 3.2 LicD family protein compare
HMPREF1058_RS15755 +1.0 6.3 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1058_RS05890 +1.0 5.8 class I SAM-dependent rRNA methyltransferase compare
HMPREF1058_RS16240 +1.0 2.8 o-succinylbenzoate synthase compare
HMPREF1058_RS14400 +1.0 1.6 nitroreductase family protein compare
HMPREF1058_RS18660 +1.0 1.1 hypothetical protein compare
HMPREF1058_RS09775 +1.0 1.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS0119685 +1.0 1.3 DUF4133 domain-containing protein compare
HMPREF1058_RS03300 +1.0 5.0 superoxide dismutase compare
HMPREF1058_RS14300 +1.0 4.3 rRNA cytosine-C5-methyltransferase compare
HMPREF1058_RS18405 +1.0 5.6 hypothetical protein compare
HMPREF1058_RS13250 +1.0 2.0 DUF3853 family protein compare
HMPREF1058_RS01730 +1.0 3.4 Cys-tRNA(Pro) deacylase compare
HMPREF1058_RS05695 +1.0 3.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02785 +1.0 2.6 hypothetical protein compare
HMPREF1058_RS07080 +1.0 2.3 YtxH domain-containing protein compare
HMPREF1058_RS07010 +1.0 4.8 endolytic transglycosylase MltG compare
HMPREF1058_RS16245 +1.0 4.0 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS06515 +1.0 6.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS12815 +0.9 5.6 sodium-dependent transporter compare
HMPREF1058_RS06255 +0.9 3.4 hypothetical protein compare
HMPREF1058_RS01805 +0.9 2.8 DUF4286 family protein compare
HMPREF1058_RS10945 +0.9 5.8 tRNA dihydrouridine synthase DusB compare
HMPREF1058_RS13940 +0.9 5.7 hypothetical protein compare
HMPREF1058_RS07335 +0.9 2.5 TolC family protein compare
HMPREF1058_RS00245 +0.9 3.6 DUF5110 domain-containing protein compare
HMPREF1058_RS07300 +0.9 3.3 MFS transporter compare
HMPREF1058_RS02815 +0.9 4.2 FecR family protein compare
HMPREF1058_RS04160 +0.9 1.7 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14680 +0.9 3.6 homoserine O-succinyltransferase compare
HMPREF1058_RS03790 +0.9 3.1 OmpA family protein compare
HMPREF1058_RS18415 +0.9 2.7 VOC family protein compare
HMPREF1058_RS05725 +0.9 1.5 hypothetical protein compare
HMPREF1058_RS15310 +0.9 4.1 Mfa1 family fimbria major subunit compare
HMPREF1058_RS01370 +0.9 2.1 hypothetical protein compare
HMPREF1058_RS16955 +0.9 4.0 cold shock domain-containing protein compare
HMPREF1058_RS12290 +0.9 4.4 DUF3109 family protein compare
HMPREF1058_RS01715 +0.8 2.4 LysO family transporter compare
HMPREF1058_RS16210 +0.8 2.1 hypothetical protein compare
HMPREF1058_RS05790 +0.8 1.2 hypothetical protein compare
HMPREF1058_RS14110 +0.8 2.2 ribosome silencing factor compare
HMPREF1058_RS15315 +0.8 1.9 FimB/Mfa2 family fimbrial subunit compare
HMPREF1058_RS01230 +0.8 3.8 redoxin domain-containing protein compare
HMPREF1058_RS06625 +0.8 3.3 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS03190 +0.8 1.9 V-type ATP synthase subunit D compare
HMPREF1058_RS01925 +0.8 2.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS11530 +0.8 3.6 adenine phosphoribosyltransferase compare
HMPREF1058_RS01085 +0.8 3.3 DUF134 domain-containing protein compare
HMPREF1058_RS0119645 +0.8 2.2 AAA family ATPase compare
HMPREF1058_RS0119785 +0.8 4.5 hypothetical protein compare
HMPREF1058_RS03765 +0.8 4.7 trimeric intracellular cation channel family protein compare
HMPREF1058_RS07310 +0.8 4.7 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS16465 +0.8 2.2 transcriptional repressor compare
HMPREF1058_RS10100 +0.8 2.2 hypothetical protein compare
HMPREF1058_RS20985 +0.8 0.9 tyrosine-type recombinase/integrase compare
HMPREF1058_RS04085 +0.8 2.7 HU family DNA-binding protein compare
HMPREF1058_RS21705 +0.8 2.5 PBSX family phage terminase large subunit compare
HMPREF1058_RS03940 +0.8 4.0 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS04645 +0.8 4.2 type II pantothenate kinase compare
HMPREF1058_RS12495 +0.8 3.3 glycine cleavage system protein GcvH compare
HMPREF1058_RS06545 +0.8 4.3 transcriptional regulator compare
HMPREF1058_RS18115 +0.8 4.5 pyruvate formate lyase-activating protein compare
HMPREF1058_RS08070 +0.8 3.7 alpha-L-fucosidase compare
HMPREF1058_RS16630 +0.8 3.6 DMP19 family protein compare
HMPREF1058_RS18465 +0.8 2.4 glycosyltransferase family 4 protein compare
HMPREF1058_RS03615 +0.8 3.8 glycosyltransferase compare
HMPREF1058_RS05800 +0.8 1.9 DUF4858 domain-containing protein compare
HMPREF1058_RS08460 +0.8 4.9 DUF2264 domain-containing protein compare
HMPREF1058_RS15795 +0.8 3.8 TolC family protein compare
HMPREF1058_RS05465 +0.7 1.1 DNA-binding protein compare
HMPREF1058_RS07370 +0.7 4.8 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS01995 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS06510 +0.7 4.0 ornithine cyclodeaminase compare
HMPREF1058_RS08615 +0.7 5.4 RluA family pseudouridine synthase compare
HMPREF1058_RS01850 +0.7 2.9 hypothetical protein compare
HMPREF1058_RS09060 +0.7 1.7 hypothetical protein compare
HMPREF1058_RS06215 +0.7 3.8 LysO family transporter compare
HMPREF1058_RS18180 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS15320 +0.7 3.2 hypothetical protein compare
HMPREF1058_RS14685 +0.7 4.5 U32 family peptidase compare
HMPREF1058_RS16675 +0.7 2.8 DUF1282 family protein compare
HMPREF1058_RS07605 +0.7 4.8 radical SAM protein compare
HMPREF1058_RS15550 +0.7 1.1 thioredoxin family protein compare
HMPREF1058_RS04600 +0.7 0.9 hypothetical protein compare
HMPREF1058_RS04230 +0.7 1.5 pyridoxamine 5'-phosphate oxidase family protein compare
HMPREF1058_RS12225 +0.7 2.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS04730 +0.7 3.3 YbbR-like domain-containing protein compare
HMPREF1058_RS10055 +0.7 5.5 translational GTPase TypA compare
HMPREF1058_RS05415 +0.7 1.4 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS18795 +0.7 3.3 DUF3298 and DUF4163 domain-containing protein compare
HMPREF1058_RS10220 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS15480 +0.7 3.3 phenylacetate--CoA ligase compare
HMPREF1058_RS12800 +0.7 4.8 TonB-dependent receptor compare
HMPREF1058_RS16830 +0.7 3.1 acyl-ACP thioesterase compare
HMPREF1058_RS01695 +0.7 2.5 LacI family DNA-binding transcriptional regulator compare
HMPREF1058_RS00470 +0.7 4.5 redox-sensing transcriptional repressor Rex compare
HMPREF1058_RS07290 +0.7 2.8 dihydrodipicolinate synthase family protein compare
HMPREF1058_RS07920 +0.7 3.0 DUF108 domain-containing protein compare
HMPREF1058_RS04445 +0.7 0.9 porin family protein compare
HMPREF1058_RS14140 +0.7 4.0 aminoacyl-histidine dipeptidase compare
HMPREF1058_RS0119790 +0.7 2.7 glycosyltransferase compare
HMPREF1058_RS18555 +0.7 3.0 sodium:solute symporter compare
HMPREF1058_RS09445 +0.7 1.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS18280 +0.7 1.1 NAD(+) diphosphatase compare
HMPREF1058_RS02720 +0.7 1.8 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
HMPREF1058_RS18095 +0.7 2.7 response regulator transcription factor compare
HMPREF1058_RS15280 +0.7 1.2 tRNA-Ser compare
HMPREF1058_RS10630 +0.7 2.8 KilA-N domain-containing protein compare
HMPREF1058_RS16770 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS16565 +0.7 1.6 TlpA family protein disulfide reductase compare
HMPREF1058_RS07630 +0.7 3.3 hypothetical protein compare
HMPREF1058_RS16840 +0.7 3.6 energy transducer TonB compare
HMPREF1058_RS06530 +0.7 3.7 flippase compare
HMPREF1058_RS05965 +0.7 2.2 hypothetical protein compare
HMPREF1058_RS03725 +0.7 2.8 pyruvate, phosphate dikinase compare
HMPREF1058_RS06425 +0.7 1.3 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS06495 +0.7 3.7 DUF1972 domain-containing protein compare
HMPREF1058_RS10010 +0.7 1.5 hypothetical protein compare
HMPREF1058_RS03630 +0.7 2.1 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS08745 +0.6 4.7 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
HMPREF1058_RS08075 +0.6 2.6 hypothetical protein compare
HMPREF1058_RS01515 +0.6 3.4 1-deoxy-D-xylulose-5-phosphate synthase compare
HMPREF1058_RS14000 +0.6 4.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS16735 +0.6 2.0 LemA family protein compare
HMPREF1058_RS16720 +0.6 2.3 nitroreductase family protein compare
HMPREF1058_RS12455 +0.6 0.9 dUTP diphosphatase compare
HMPREF1058_RS16305 +0.6 1.5 CRISPR-associated endonuclease Cas2 compare
HMPREF1058_RS11190 +0.6 3.2 rubrerythrin family protein compare
HMPREF1058_RS06525 +0.6 4.0 hypothetical protein compare
HMPREF1058_RS13425 +0.6 3.0 HU family DNA-binding protein compare
HMPREF1058_RS18765 +0.6 3.6 formate--tetrahydrofolate ligase compare
HMPREF1058_RS14660 +0.6 2.6 TolC family protein compare
HMPREF1058_RS13785 +0.6 4.5 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS02125 +0.6 3.5 PorT family protein compare
HMPREF1058_RS03710 +0.6 2.9 hypothetical protein compare
HMPREF1058_RS0119985 +0.6 1.8 NAD(P)H-dependent oxidoreductase subunit E compare
HMPREF1058_RS03565 +0.6 1.5 DUF3990 domain-containing protein compare
HMPREF1058_RS06535 +0.6 2.6 hypothetical protein compare
HMPREF1058_RS16575 +0.6 1.5 hypothetical protein compare
HMPREF1058_RS18895 +0.6 1.1 hypothetical protein compare
HMPREF1058_RS01425 +0.6 3.1 sirohydrochlorin cobaltochelatase compare
HMPREF1058_RS18420 +0.6 2.9 DUF3805 domain-containing protein compare
HMPREF1058_RS13040 +0.6 1.8 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS11520 +0.6 2.3 D-tyrosyl-tRNA(Tyr) deacylase compare
HMPREF1058_RS20500 +0.6 1.8 YbaN family protein compare
HMPREF1058_RS14880 +0.6 2.4 radical SAM protein compare
HMPREF1058_RS07930 +0.6 2.9 TerB family tellurite resistance protein compare
HMPREF1058_RS18815 +0.6 2.8 AMP-binding protein compare
HMPREF1058_RS09175 +0.6 0.8 RNA polymerase sigma factor compare
HMPREF1058_RS16015 +0.6 1.1 helix-turn-helix domain-containing protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Glucose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Glucose across organisms