Experiment set9S151 for Phocaeicola vulgatus CL09T03C04

Compare to:

Inulin from chicory; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -6.5 -4.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09675 -6.4 -7.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS08850 -6.4 -6.2 N-acetyltransferase compare
HMPREF1058_RS08650 -6.0 -10.0 glutamate 5-kinase compare
HMPREF1058_RS15885 -5.9 -8.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS06170 -5.9 -5.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS07190 -5.9 -7.0 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS12105 -5.7 -7.8 shikimate kinase compare
HMPREF1058_RS14725 -5.7 -11.6 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14920 -5.7 -10.9 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS14545 -5.7 -9.5 2-isopropylmalate synthase compare
HMPREF1058_RS07200 -5.6 -8.6 tryptophan synthase subunit alpha compare
HMPREF1058_RS14610 -5.6 -12.6 adenylosuccinate synthase compare
HMPREF1058_RS09585 -5.6 -16.9 argininosuccinate lyase compare
HMPREF1058_RS15875 -5.6 -7.7 histidinol dehydrogenase compare
HMPREF1058_RS07185 -5.6 -9.3 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS11730 -5.6 -3.8 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS07175 -5.5 -10.0 anthranilate synthase component I family protein compare
HMPREF1058_RS14565 -5.5 -13.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS08830 -5.5 -9.1 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS03800 -5.5 -7.5 serine hydroxymethyltransferase compare
HMPREF1058_RS10820 -5.4 -14.9 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS14550 -5.4 -11.0 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS06180 -5.4 -6.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS15870 -5.4 -7.4 ATP phosphoribosyltransferase compare
HMPREF1058_RS12780 -5.4 -11.5 M20 family metallo-hydrolase compare
HMPREF1058_RS03000 -5.4 -9.0 IMP dehydrogenase compare
HMPREF1058_RS07170 -5.4 -10.9 tryptophan synthase subunit beta compare
HMPREF1058_RS14720 -5.4 -14.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS14785 -5.4 -8.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS12115 -5.3 -13.7 acetylglutamate kinase compare
HMPREF1058_RS14730 -5.3 -10.2 threonine synthase compare
HMPREF1058_RS08645 -5.3 -12.7 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14795 -5.3 -5.1 prephenate dehydratase compare
HMPREF1058_RS08835 -5.3 -9.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS08325 -5.2 -8.0 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS08840 -5.2 -11.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS08845 -5.2 -11.0 argininosuccinate synthase compare
HMPREF1058_RS10075 -5.2 -15.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14560 -5.1 -10.9 2-isopropylmalate synthase compare
HMPREF1058_RS14790 -5.1 -12.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS17885 -5.1 -12.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS10995 -5.1 -6.1 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS17935 -5.1 -6.1 glycosyltransferase compare
HMPREF1058_RS07195 -5.1 -4.9 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS17940 -5.0 -3.4 alpha-amylase compare
HMPREF1058_RS07955 -4.9 -11.0 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS08025 -4.9 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS06175 -4.9 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS15880 -4.8 -12.1 histidinol-phosphate transaminase compare
HMPREF1058_RS16815 -4.8 -9.3 dihydroxy-acid dehydratase compare
HMPREF1058_RS03910 -4.8 -4.7 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS10080 -4.8 -17.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS13970 -4.8 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS08855 -4.8 -13.0 arginine repressor compare
HMPREF1058_RS14770 -4.8 -9.1 prephenate dehydrogenase compare
HMPREF1058_RS17080 -4.8 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS13795 -4.7 -7.9 DUF4954 family protein compare
HMPREF1058_RS15075 -4.7 -11.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS15435 -4.6 -8.2 hypothetical protein compare
HMPREF1058_RS17035 -4.6 -6.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS14555 -4.5 -3.1 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS04295 -4.5 -4.4 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS16820 -4.4 -9.0 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS16835 -4.3 -8.3 ketol-acid reductoisomerase compare
HMPREF1058_RS06195 -4.3 -4.2 diaminopimelate decarboxylase compare
HMPREF1058_RS11270 -4.3 -12.7 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS16730 -4.2 -2.9 chorismate synthase compare
HMPREF1058_RS08640 -4.2 -4.1 acetylornithine carbamoyltransferase compare
HMPREF1058_RS17045 -4.2 -4.9 hypothetical protein compare
HMPREF1058_RS16760 -4.1 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS17155 -4.1 -2.8 dCMP deaminase family protein compare
HMPREF1058_RS03970 -4.1 -2.8 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS15665 -4.0 -7.7 MFS transporter compare
HMPREF1058_RS17050 -4.0 -8.9 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS17930 -4.0 -14.3 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS10720 -3.9 -9.9 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS07180 -3.8 -5.7 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS17815 -3.7 -5.1 MFS transporter compare
HMPREF1058_RS02220 -3.7 -2.6 branched-chain amino acid aminotransferase compare
HMPREF1058_RS02115 -3.7 -14.4 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS17060 -3.7 -6.6 HAD family hydrolase compare
HMPREF1058_RS06165 -3.6 -8.5 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS16825 -3.6 -9.6 acetolactate synthase small subunit compare
HMPREF1058_RS00560 -3.6 -2.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS13730 -3.6 -4.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS04300 -3.6 -5.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS02755 -3.5 -2.4 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS06160 -3.5 -8.7 formyltetrahydrofolate deformylase compare
HMPREF1058_RS17075 -3.4 -12.1 inositol-3-phosphate synthase compare
HMPREF1058_RS06190 -3.4 -7.2 aspartate kinase compare
HMPREF1058_RS16750 -3.4 -2.3 shikimate dehydrogenase compare
HMPREF1058_RS12110 -3.3 -12.6 biosynthetic arginine decarboxylase compare
HMPREF1058_RS17040 -3.3 -5.4 NTP transferase domain-containing protein compare
HMPREF1058_RS02750 -3.3 -3.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06225 -3.2 -3.1 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS00700 -3.2 -10.4 DUF4831 family protein compare
HMPREF1058_RS15395 -3.2 -2.2 dihydroorotase compare
HMPREF1058_RS03510 -3.1 -6.9 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS03085 -3.1 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS18400 -3.1 -7.7 RidA family protein compare
HMPREF1058_RS06320 -3.1 -7.3 electron transport complex subunit RsxA compare
HMPREF1058_RS17205 -3.0 -2.1 DUF4199 domain-containing protein compare
HMPREF1058_RS14005 -3.0 -2.0 3-dehydroquinate synthase compare
HMPREF1058_RS01650 -2.9 -5.5 hypothetical protein compare
HMPREF1058_RS11490 -2.9 -5.5 redox-regulated ATPase YchF compare
HMPREF1058_RS14490 -2.9 -11.9 S9 family peptidase compare
HMPREF1058_RS02170 -2.9 -7.6 hypothetical protein compare
HMPREF1058_RS06340 -2.9 -5.0 electron transport complex subunit RsxC compare
HMPREF1058_RS14930 -2.8 -9.2 AraC family transcriptional regulator compare
HMPREF1058_RS07670 -2.8 -2.7 HAMP domain-containing histidine kinase compare
HMPREF1058_RS04070 -2.8 -1.9 hypothetical protein compare
HMPREF1058_RS04065 -2.8 -1.9 VWA domain-containing protein compare
HMPREF1058_RS16845 -2.8 -2.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS09610 -2.8 -9.7 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS06560 -2.7 -9.0 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS00590 -2.7 -5.3 hypothetical protein compare
HMPREF1058_RS05780 -2.7 -9.4 PD40 domain-containing protein compare
HMPREF1058_RS13655 -2.7 -15.1 cardiolipin synthase compare
HMPREF1058_RS04045 -2.6 -4.0 tetratricopeptide repeat protein compare
HMPREF1058_RS11040 -2.6 -6.7 polysaccharide deacetylase family protein compare
HMPREF1058_RS02135 -2.5 -14.6 phosphoenolpyruvate synthase compare
HMPREF1058_RS12505 -2.5 -6.9 RNA polymerase factor sigma-54 compare
HMPREF1058_RS10955 -2.5 -7.4 phosphatase PAP2 family protein compare
HMPREF1058_RS12795 -2.4 -8.2 CYTH domain-containing protein compare
HMPREF1058_RS04075 -2.4 -1.6 DUF58 domain-containing protein compare
HMPREF1058_RS16690 -2.4 -9.0 NTP transferase domain-containing protein compare
HMPREF1058_RS18505 -2.4 -2.3 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS17130 -2.4 -1.6 tetratricopeptide repeat protein compare
HMPREF1058_RS04080 -2.3 -1.6 AAA family ATPase compare
HMPREF1058_RS15975 -2.3 -7.8 saccharopine dehydrogenase family protein compare
HMPREF1058_RS01745 -2.3 -3.8 PorT family protein compare
HMPREF1058_RS08295 -2.3 -6.7 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS06325 -2.3 -3.9 electron transport complex subunit E compare
HMPREF1058_RS06335 -2.3 -7.5 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS02800 -2.2 -8.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS18265 -2.2 -2.2 aspartate 1-decarboxylase compare
HMPREF1058_RS06345 -2.2 -5.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06820 -2.2 -9.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS06330 -2.2 -5.5 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS17775 -2.1 -4.6 hypothetical protein compare
HMPREF1058_RS17965 -2.1 -2.5 DUF452 family protein compare
HMPREF1058_RS11535 -2.1 -8.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS11625 -2.1 -13.4 S41 family peptidase compare
HMPREF1058_RS03290 -2.1 -4.4 thiamine phosphate synthase compare
HMPREF1058_RS04375 -2.1 -7.4 carbon-nitrogen hydrolase compare
HMPREF1058_RS07040 -2.0 -10.3 tetratricopeptide repeat protein compare
HMPREF1058_RS11205 -2.0 -1.3 radical SAM protein compare
HMPREF1058_RS15565 -2.0 -12.5 hypothetical protein compare
HMPREF1058_RS05140 -2.0 -1.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS05145 -2.0 -5.9 ATP-binding protein compare
HMPREF1058_RS08535 -1.9 -4.0 elongation factor P compare
HMPREF1058_RS03285 -1.9 -7.0 thiazole synthase compare
HMPREF1058_RS07440 -1.9 -7.2 aspartate--ammonia ligase compare
HMPREF1058_RS03075 -1.8 -4.8 DNA helicase RecQ compare
HMPREF1058_RS03265 -1.8 -10.0 2-iminoacetate synthase ThiH compare
HMPREF1058_RS02110 -1.8 -12.5 NADP-dependent malic enzyme compare
HMPREF1058_RS04050 -1.8 -1.2 protein BatD compare
HMPREF1058_RS00565 -1.8 -10.0 hemolysin III family protein compare
HMPREF1058_RS02405 -1.8 -12.7 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS01210 -1.8 -9.7 endopeptidase La compare
HMPREF1058_RS09685 -1.7 -9.6 tetratricopeptide repeat protein compare
HMPREF1058_RS16620 -1.7 -9.2 GGGtGRT protein compare
HMPREF1058_RS09240 -1.7 -9.4 type I methionyl aminopeptidase compare
HMPREF1058_RS06600 -1.7 -3.0 DedA family protein compare
HMPREF1058_RS13735 -1.7 -3.1 hypothetical protein compare
HMPREF1058_RS09445 -1.7 -2.2 tyrosine-type recombinase/integrase compare
HMPREF1058_RS10840 -1.7 -2.1 hypothetical protein compare
HMPREF1058_RS03260 -1.7 -7.4 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS14200 -1.7 -10.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS06080 -1.7 -6.3 glutamine synthetase III compare
HMPREF1058_RS01665 -1.6 -3.3 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS11220 -1.6 -1.7 RNA methyltransferase compare
HMPREF1058_RS02410 -1.6 -12.0 methylmalonyl-CoA mutase compare
HMPREF1058_RS06350 -1.6 -4.8 SoxR reducing system RseC family protein compare
HMPREF1058_RS16625 -1.6 -5.8 hypothetical protein compare
HMPREF1058_RS01705 -1.6 -2.4 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS09890 -1.6 -1.5 DUF3876 domain-containing protein compare
HMPREF1058_RS08065 -1.5 -8.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS03280 -1.5 -8.5 phosphomethylpyrimidine synthase ThiC compare
HMPREF1058_RS13790 -1.5 -8.0 GTPase HflX compare
HMPREF1058_RS15660 -1.5 -7.8 galactokinase compare
HMPREF1058_RS15550 -1.4 -1.8 thioredoxin family protein compare
HMPREF1058_RS16755 -1.4 -2.7 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS09485 -1.4 -10.4 PDZ domain-containing protein compare
HMPREF1058_RS16490 -1.4 -8.9 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS11890 -1.4 -3.5 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS14605 -1.4 -3.6 transcriptional repressor compare
HMPREF1058_RS03310 -1.4 -6.0 carboxynorspermidine decarboxylase compare
HMPREF1058_RS00710 -1.4 -5.4 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS15920 -1.3 -1.9 hypothetical protein compare
HMPREF1058_RS16500 -1.3 -3.4 OadG family protein compare
HMPREF1058_RS13635 -1.3 -3.7 gliding motility lipoprotein GldH compare
HMPREF1058_RS07840 -1.3 -2.8 hypothetical protein compare
HMPREF1058_RS15855 -1.3 -6.2 uridine kinase compare
HMPREF1058_RS01905 -1.3 -3.8 hypothetical protein compare
HMPREF1058_RS14505 -1.3 -3.7 mechanosensitive ion channel compare
HMPREF1058_RS11910 -1.3 -6.5 DEAD/DEAH box helicase compare
HMPREF1058_RS17150 -1.3 -7.2 S41 family peptidase compare
HMPREF1058_RS01570 -1.3 -6.3 ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Inulin from chicory across organisms