Experiment set9S151 for Phocaeicola vulgatus CL09T03C04

Compare to:

Inulin from chicory; autoclaved 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS14270 +3.5 24.3 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS03215 +2.3 19.6 AhpC/TSA family protein compare
HMPREF1058_RS12035 +1.8 6.1 phosphate butyryltransferase compare
HMPREF1058_RS09775 +1.7 2.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS18570 +1.6 8.1 GNAT family N-acetyltransferase compare
HMPREF1058_RS14130 +1.5 7.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS14285 +1.5 5.4 DUF5056 domain-containing protein compare
HMPREF1058_RS18235 +1.4 6.7 3'-5' exonuclease compare
HMPREF1058_RS09185 +1.4 6.8 DUF4252 domain-containing protein compare
HMPREF1058_RS09990 +1.4 10.2 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS03130 +1.3 4.1 DUF177 domain-containing protein compare
HMPREF1058_RS15755 +1.3 9.5 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1058_RS12065 +1.3 2.9 DUF4491 family protein compare
HMPREF1058_RS03890 +1.3 9.8 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1058_RS04290 +1.3 7.7 DUF1015 domain-containing protein compare
HMPREF1058_RS16775 +1.3 8.4 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS09180 +1.2 5.9 hypothetical protein compare
HMPREF1058_RS06300 +1.2 9.1 YitT family protein compare
HMPREF1058_RS07675 +1.1 8.6 elongation factor G compare
HMPREF1058_RS03110 +1.1 7.3 ABC transporter ATP-binding protein compare
HMPREF1058_RS08520 +1.1 4.0 DUF59 domain-containing protein compare
HMPREF1058_RS12815 +1.1 9.0 sodium-dependent transporter compare
HMPREF1058_RS14110 +1.1 2.0 ribosome silencing factor compare
HMPREF1058_RS0119785 +1.1 6.9 hypothetical protein compare
HMPREF1058_RS16210 +1.1 2.9 hypothetical protein compare
HMPREF1058_RS09440 +1.1 4.5 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS18660 +1.1 1.9 hypothetical protein compare
HMPREF1058_RS16250 +1.1 7.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS21380 +1.1 3.3 hypothetical protein compare
HMPREF1058_RS14295 +1.1 3.5 hypothetical protein compare
HMPREF1058_RS03105 +1.1 5.0 ABC transporter permease compare
HMPREF1058_RS14065 +1.0 7.4 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS09980 +1.0 1.7 PcfK-like family protein compare
HMPREF1058_RS06640 +1.0 6.7 chain-length determining protein compare
HMPREF1058_RS00245 +1.0 4.2 DUF5110 domain-containing protein compare
HMPREF1058_RS06505 +1.0 4.1 LicD family protein compare
HMPREF1058_RS01725 +1.0 5.0 peptide MFS transporter compare
HMPREF1058_RS04025 +1.0 7.2 hypothetical protein compare
HMPREF1058_RS04520 +1.0 1.7 hypothetical protein compare
HMPREF1058_RS07575 +1.0 5.0 MCE family protein compare
HMPREF1058_RS06645 +1.0 6.9 SLBB domain-containing protein compare
HMPREF1058_RS06530 +0.9 6.3 flippase compare
HMPREF1058_RS02780 +0.9 7.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS06545 +0.9 6.7 transcriptional regulator compare
HMPREF1058_RS15795 +0.9 6.2 TolC family protein compare
HMPREF1058_RS16935 +0.9 6.1 hypothetical protein compare
HMPREF1058_RS14050 +0.9 6.5 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS18565 +0.9 1.2 hypothetical protein compare
HMPREF1058_RS11315 +0.9 6.6 tRNA pseudouridine(55) synthase TruB compare
HMPREF1058_RS16830 +0.9 3.9 acyl-ACP thioesterase compare
HMPREF1058_RS03630 +0.9 3.9 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS10945 +0.9 6.9 tRNA dihydrouridine synthase DusB compare
HMPREF1058_RS07010 +0.9 5.5 endolytic transglycosylase MltG compare
HMPREF1058_RS06520 +0.8 4.0 capsular polysaccharide synthesis protein compare
HMPREF1058_RS07245 +0.8 2.9 Rne/Rng family ribonuclease compare
HMPREF1058_RS03615 +0.8 4.9 glycosyltransferase compare
HMPREF1058_RS16770 +0.8 3.6 hypothetical protein compare
HMPREF1058_RS00140 +0.8 4.2 L-rhamnose mutarotase compare
HMPREF1058_RS18560 +0.8 2.3 recombination protein RecR compare
HMPREF1058_RS04445 +0.8 1.5 porin family protein compare
HMPREF1058_RS01605 +0.8 4.9 MBL fold metallo-hydrolase compare
HMPREF1058_RS11915 +0.8 1.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS06540 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS02775 +0.7 6.2 response regulator compare
HMPREF1058_RS06525 +0.7 5.6 hypothetical protein compare
HMPREF1058_RS00440 +0.7 1.4 hypothetical protein compare
HMPREF1058_RS14140 +0.7 4.7 aminoacyl-histidine dipeptidase compare
HMPREF1058_RS16155 +0.7 4.6 polysaccharide pyruvyl transferase family protein compare
HMPREF1058_RS21475 +0.7 0.9 smalltalk protein compare
HMPREF1058_RS02785 +0.7 2.2 hypothetical protein compare
HMPREF1058_RS12550 +0.7 3.1 rubredoxin compare
HMPREF1058_RS16215 +0.7 3.3 hypothetical protein compare
HMPREF1058_RS21450 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS05615 +0.7 1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS18780 +0.7 5.6 aminomethyl-transferring glycine dehydrogenase compare
HMPREF1058_RS14470 +0.7 5.9 hypothetical protein compare
HMPREF1058_RS17875 +0.7 1.5 DUF1573 domain-containing protein compare
HMPREF1058_RS09370 +0.7 3.8 DUF3467 domain-containing protein compare
HMPREF1058_RS17170 +0.7 4.4 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS03605 +0.7 4.2 glycosyltransferase family 2 protein compare
HMPREF1058_RS02765 +0.7 3.8 insulinase family protein compare
HMPREF1058_RS12715 +0.7 5.6 porin family protein compare
HMPREF1058_RS12200 +0.7 4.2 CvpA family protein compare
HMPREF1058_RS16175 +0.7 3.2 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS00400 +0.6 3.7 GntR family transcriptional regulator compare
HMPREF1058_RS20340 +0.6 2.3 DUF3873 family protein compare
HMPREF1058_RS0119790 +0.6 3.6 glycosyltransferase compare
HMPREF1058_RS18090 +0.6 2.8 hemerythrin domain-containing protein compare
HMPREF1058_RS03885 +0.6 3.6 insulinase family protein compare
HMPREF1058_RS15740 +0.6 2.8 hypothetical protein compare
HMPREF1058_RS15215 +0.6 4.5 hypothetical protein compare
HMPREF1058_RS16255 +0.6 1.9 isochorismate synthase compare
HMPREF1058_RS12525 +0.6 1.8 Na/Pi cotransporter family protein compare
HMPREF1058_RS05300 +0.6 1.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS00465 +0.6 2.8 translation initiation factor compare
HMPREF1058_RS06495 +0.6 4.2 DUF1972 domain-containing protein compare
HMPREF1058_RS09700 +0.6 1.6 methionine--tRNA ligase compare
HMPREF1058_RS06215 +0.6 3.4 LysO family transporter compare
HMPREF1058_RS16165 +0.6 2.4 glycoside hydrolase family 16 protein compare
HMPREF1058_RS0119805 +0.6 3.6 lysine exporter LysO family protein compare
HMPREF1058_RS18695 +0.6 1.8 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS03580 +0.6 1.5 UpxY family transcription antiterminator compare
HMPREF1058_RS17365 +0.6 2.1 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS06005 +0.6 2.0 GlsB/YeaQ/YmgE family stress response membrane protein compare
HMPREF1058_RS03470 +0.6 2.9 glycosyltransferase compare
HMPREF1058_RS06535 +0.6 2.1 hypothetical protein compare
HMPREF1058_RS03450 +0.6 1.3 hypothetical protein compare
HMPREF1058_RS03720 +0.6 4.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
HMPREF1058_RS08285 +0.6 2.1 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS04985 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS06510 +0.6 3.1 ornithine cyclodeaminase compare
HMPREF1058_RS05695 +0.6 2.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04950 +0.6 0.9 hypothetical protein compare
HMPREF1058_RS10500 +0.6 2.2 HU family DNA-binding protein compare
HMPREF1058_RS15315 +0.5 2.0 FimB/Mfa2 family fimbrial subunit compare
HMPREF1058_RS10575 +0.5 2.0 3-oxoacyl-ACP reductase FabG compare
HMPREF1058_RS16260 +0.5 1.4 hotdog fold thioesterase compare
HMPREF1058_RS18465 +0.5 2.3 glycosyltransferase family 4 protein compare
HMPREF1058_RS15750 +0.5 3.9 glucosaminidase domain-containing protein compare
HMPREF1058_RS14680 +0.5 2.9 homoserine O-succinyltransferase compare
HMPREF1058_RS01805 +0.5 2.0 DUF4286 family protein compare
HMPREF1058_RS16630 +0.5 2.5 DMP19 family protein compare
HMPREF1058_RS14880 +0.5 2.6 radical SAM protein compare
HMPREF1058_RS01720 +0.5 2.1 lysine exporter LysO family protein compare
HMPREF1058_RS07570 +0.5 3.7 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS18765 +0.5 3.9 formate--tetrahydrofolate ligase compare
HMPREF1058_RS15270 +0.5 2.5 7-cyano-7-deazaguanine synthase QueC compare
HMPREF1058_RS05415 +0.5 1.1 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS03625 +0.5 3.1 polysaccharide pyruvyl transferase family protein compare
HMPREF1058_RS05405 +0.5 2.5 6-phosphofructokinase compare
HMPREF1058_RS13640 +0.5 2.4 hypothetical protein compare
HMPREF1058_RS07165 +0.5 2.7 YtxH domain-containing protein compare
HMPREF1058_RS18095 +0.5 2.8 response regulator transcription factor compare
HMPREF1058_RS09860 +0.5 0.7 DUF3408 domain-containing protein compare
HMPREF1058_RS16185 +0.5 2.6 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS13250 +0.5 1.3 DUF3853 family protein compare
HMPREF1058_RS16180 +0.5 3.0 YjbH domain-containing protein compare
HMPREF1058_RS05885 +0.5 3.4 3'-5' exonuclease domain-containing protein 2 compare
HMPREF1058_RS16595 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS04385 +0.5 2.5 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HMPREF1058_RS02495 +0.5 3.1 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS05820 +0.5 1.7 nicotinamide mononucleotide transporter compare
HMPREF1058_RS17195 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS08290 +0.5 2.1 nucleoside-diphosphate kinase compare
HMPREF1058_RS01620 +0.5 0.9 tRNA-Lys compare
HMPREF1058_RS16140 +0.5 2.8 hypothetical protein compare
HMPREF1058_RS01240 +0.5 3.8 DEAD/DEAH box helicase compare
HMPREF1058_RS16955 +0.5 2.6 cold shock domain-containing protein compare
HMPREF1058_RS07445 +0.5 2.5 uracil-DNA glycosylase compare
HMPREF1058_RS13045 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS14685 +0.5 3.4 U32 family peptidase compare
HMPREF1058_RS21435 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS04990 +0.5 2.1 LysR family transcriptional regulator compare
HMPREF1058_RS16810 +0.5 1.7 hypothetical protein compare
HMPREF1058_RS08600 +0.5 2.3 RNA-binding protein compare
HMPREF1058_RS01930 +0.5 1.7 type II toxin-antitoxin system HigB family toxin compare
HMPREF1058_RS01730 +0.5 3.2 Cys-tRNA(Pro) deacylase compare
HMPREF1058_RS16150 +0.5 2.5 glycosyltransferase compare
HMPREF1058_RS04605 +0.5 1.3 HNH endonuclease compare
HMPREF1058_RS10900 +0.5 2.5 glycosyltransferase compare
HMPREF1058_RS09905 +0.5 1.0 conjugative transposon protein TraK compare
HMPREF1058_RS18890 +0.5 1.6 DUF3127 domain-containing protein compare
HMPREF1058_RS02555 +0.5 2.1 DJ-1/PfpI family protein compare
HMPREF1058_RS04145 +0.4 2.1 glycine betaine ABC transporter substrate-binding protein compare
HMPREF1058_RS13650 +0.4 2.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
HMPREF1058_RS20485 +0.4 0.9 mobilization protein compare
HMPREF1058_RS15115 +0.4 3.2 CapA family protein compare
HMPREF1058_RS03940 +0.4 3.1 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS03690 +0.4 2.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04220 +0.4 2.1 class I SAM-dependent methyltransferase compare
HMPREF1058_RS02760 +0.4 2.8 peptidylprolyl isomerase compare
HMPREF1058_RS14820 +0.4 3.2 tetratricopeptide repeat protein compare
HMPREF1058_RS14815 +0.4 2.7 AI-2E family transporter compare
HMPREF1058_RS0119755 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS17430 +0.4 2.1 DUF3868 domain-containing protein compare
HMPREF1058_RS21490 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS14315 +0.4 2.1 thioesterase family protein compare
HMPREF1058_RS13785 +0.4 3.4 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS03930 +0.4 2.1 ABC transporter permease compare
HMPREF1058_RS05675 +0.4 2.0 site-specific integrase compare
HMPREF1058_RS01685 +0.4 1.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS03490 +0.4 1.8 glycosyltransferase family 4 protein compare
HMPREF1058_RS12495 +0.4 2.3 glycine cleavage system protein GcvH compare
HMPREF1058_RS06470 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS15735 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS03475 +0.4 1.7 radical SAM protein compare
HMPREF1058_RS05725 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS05890 +0.4 2.9 class I SAM-dependent rRNA methyltransferase compare
HMPREF1058_RS05920 +0.4 0.8 hypothetical protein compare
HMPREF1058_RS14750 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS06625 +0.4 2.2 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS05765 +0.4 2.4 nucleoside phosphorylase compare
HMPREF1058_RS10010 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS0119450 +0.4 2.7 N-acetyltransferase compare
HMPREF1058_RS05230 +0.4 1.5 RNA methyltransferase compare
HMPREF1058_RS18940 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS12125 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS05005 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS16235 +0.4 2.6 AMP-binding protein compare
HMPREF1058_RS13040 +0.4 1.4 winged helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Inulin from chicory across organisms