Experiment set9S129 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes Location 3 4 dpi (25 plantes)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.621.1 -6.1 -4.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.2946.1 -5.9 -4.1 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.2945.1 -5.9 -2.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.1049.1 -5.5 -7.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.618.1 -5.4 -3.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.2012.1 -5.2 -3.6 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1964.1 -5.2 -8.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.2387.1 -5.1 -3.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.2011.1 -5.0 -2.7 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2318.1 -4.9 -5.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.1053.1 -4.9 -5.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.4788.1 -4.7 -1.3 FIG01210406: hypothetical protein compare
Xcc-8004.1058.1 -4.6 -2.7 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.271.1 -4.6 -3.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1132.1 -4.5 -2.9 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.1205.1 -4.5 -3.1 hypothetical protein compare
Xcc-8004.5203.1 -4.4 -2.8 Twin-arginine translocation protein TatB compare
Xcc-8004.2323.1 -4.3 -7.7 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.601.1 -4.3 -5.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3536.1 -4.3 -7.2 FIG01210913: hypothetical protein compare
Xcc-8004.657.1 -4.3 -8.2 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2944.1 -4.3 -9.1 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.4439.1 -4.2 -9.5 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3537.1 -4.2 -7.6 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.1967.1 -4.2 -10.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.1676.1 -4.2 -10.5 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2319.1 -4.2 -5.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.2954.1 -4.2 -14.9 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.608.1 -4.1 -9.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.2947.1 -4.1 -8.7 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.3282.1 -4.1 -7.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.622.1 -4.0 -5.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.1059.1 -4.0 -8.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.1615.1 -3.9 -2.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.957.1 -3.9 -6.2 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.43.1 -3.8 -9.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.2943.1 -3.7 -6.8 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.2948.1 -3.7 -8.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.4026.1 -3.7 -7.6 FIG01209666: hypothetical protein compare
Xcc-8004.2320.1 -3.6 -6.6 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.3923.1 -3.5 -2.6 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4620.1 -3.5 -8.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2079.1 -3.5 -4.8 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.1057.1 -3.5 -11.4 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.2322.1 -3.5 -6.1 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.44.1 -3.5 -23.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.3395.1 -3.5 -2.4 Transcriptional regulator, GntR family compare
Xcc-8004.2327.1 -3.4 -8.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.502.1 -3.4 -2.8 Biotin synthesis protein BioH compare
Xcc-8004.3283.1 -3.4 -8.2 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.505.1 -3.4 -8.6 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.4737.1 -3.4 -5.1 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.4073.1 -3.3 -10.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2957.1 -3.3 -7.0 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.4732.1 -3.3 -2.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.577.1 -3.3 -6.4 Transcriptional regulator, MarR family compare
Xcc-8004.4102.1 -3.3 -2.0 FIG01211949: hypothetical protein compare
Xcc-8004.3855.1 -3.2 -7.8 FIG01209965: hypothetical protein compare
Xcc-8004.4481.1 -3.2 -6.9 hypothetical protein compare
Xcc-8004.3346.1 -3.2 -3.8 hypothetical protein compare
Xcc-8004.3815.1 -3.2 -3.6 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4596.1 -3.2 -10.0 hypothetical protein compare
Xcc-8004.4824.1 -3.1 -10.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3049.1 -3.1 -9.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3433.1 -3.1 -6.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2316.1 -3.1 -8.7 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.4112.1 -3.1 -4.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.451.1 -3.0 -2.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.659.1 -3.0 -2.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2942.1 -3.0 -5.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.623.1 -3.0 -2.0 Phosphoserine phosphatase compare
Xcc-8004.1026.1 -3.0 -3.8 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.1022.1 -3.0 -5.7 hypothetical protein compare
Xcc-8004.5020.1 -3.0 -4.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.1050.1 -3.0 -2.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.3324.1 -2.9 -4.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2977.1 -2.9 -16.1 hypothetical protein compare
Xcc-8004.4181.1 -2.9 -1.1 Molybdenum cofactor biosynthesis protein MoaB compare
Xcc-8004.4241.1 -2.9 -2.4 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.1336.1 -2.8 -7.8 two-component system sensor protein compare
Xcc-8004.2929.1 -2.8 -5.1 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.1249.1 -2.8 -5.9 Transcriptional regulator compare
Xcc-8004.1060.1 -2.8 -5.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.826.1 -2.7 -11.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.1962.1 -2.7 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.4738.1 -2.7 -9.6 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.1056.1 -2.6 -3.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.4024.1 -2.6 -5.9 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.4530.1 -2.6 -4.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.1027.1 -2.6 -1.7 Two-component system sensor protein compare
Xcc-8004.1873.1 -2.6 -3.1 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.4204.1 -2.6 -2.9 FIG01210014: hypothetical protein compare
Xcc-8004.3281.1 -2.5 -4.6 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.270.1 -2.5 -6.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.1164.1 -2.5 -3.1 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.2326.1 -2.5 -4.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.2447.1 -2.5 -11.4 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.1016.1 -2.5 -6.4 Sucrose phosphorylase (EC 2.4.1.7) compare
Xcc-8004.4025.1 -2.5 -8.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.846.1 -2.5 -2.8 Protein of unknown function DUF484 compare
Xcc-8004.2561.1 -2.4 -8.2 FIG01213638: hypothetical protein compare
Xcc-8004.4398.1 -2.4 -4.4 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.3663.1 -2.4 -3.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.1414.1 -2.4 -0.9 Lactoylglutathione lyase and related lyases compare
Xcc-8004.130.1 -2.4 -7.6 hypothetical protein compare
Xcc-8004.1010.1 -2.3 -3.1 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.1372.1 -2.3 -3.0 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1511.1 -2.3 -2.0 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.1241.1 -2.3 -4.7 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.726.1 -2.3 -0.9 Putative preQ0 transporter compare
Xcc-8004.4510.1 -2.3 -1.3 ATP binding component of ABC-transporter compare
Xcc-8004.4427.1 -2.2 -2.7 General secretion pathway protein J compare
Xcc-8004.2260.1 -2.2 -3.5 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.1437.1 -2.2 -5.4 Kup system potassium uptake protein compare
Xcc-8004.1768.1 -2.2 -1.6 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.1023.1 -2.2 -5.1 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.956.1 -2.2 -6.0 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) compare
Xcc-8004.2450.1 -2.2 -11.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.1236.1 -2.2 -5.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1658.1 -2.1 -6.4 hypothetical protein compare
Xcc-8004.3863.1 -2.1 -4.8 Septum site-determining protein MinD compare
Xcc-8004.1914.1 -2.1 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.3955.1 -2.1 -5.5 HflK protein compare
Xcc-8004.5021.1 -2.1 -1.5 FIG01211474: hypothetical protein compare
Xcc-8004.2420.1 -2.1 -6.0 PHA synthase subunit compare
Xcc-8004.1028.1 -2.1 -5.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.2384.1 -2.0 -9.0 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.1871.1 -2.0 -2.8 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.741.1 -2.0 -1.5 hypothetical protein compare
Xcc-8004.2931.1 -2.0 -3.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.4834.1 -2.0 -4.7 Sodium - Bile acid symporter compare
Xcc-8004.3595.1 -2.0 -1.6 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.934.1 -2.0 -1.6 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.1839.1 -2.0 -1.4 FIG01210863: hypothetical protein compare
Xcc-8004.4225.1 -2.0 -1.6 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.4046.1 -1.9 -7.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4425.1 -1.9 -4.5 General secretion pathway protein L compare
Xcc-8004.155.1 -1.9 -1.3 FIG01210803: hypothetical protein compare
Xcc-8004.4000.1 -1.9 -3.2 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.4836.1 -1.9 -4.7 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1955.1 -1.9 -3.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3394.1 -1.9 -2.4 hypothetical protein compare
Xcc-8004.2217.1 -1.9 -3.6 FIG01209779: hypothetical protein compare
Xcc-8004.1359.1 -1.9 -4.6 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2081.1 -1.9 -2.9 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.1204.1 -1.9 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.1680.1 -1.8 -4.0 FIG006611: nucleotidyltransferase compare
Xcc-8004.402.1 -1.8 -2.8 FIG01209770: hypothetical protein compare
Xcc-8004.2956.1 -1.8 -1.3 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.3612.1 -1.8 -1.1 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.4329.1 -1.8 -1.2 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.1158.1 -1.8 -1.6 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.2833.1 -1.8 -3.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.2930.1 -1.8 -1.0 hypothetical protein compare
Xcc-8004.1334.1 -1.8 -1.3 hypothetical protein compare
Xcc-8004.968.1 -1.8 -7.4 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.4251.1 -1.8 -2.0 hypothetical protein compare
Xcc-8004.337.1 -1.8 -2.6 ATPase, AFG1 family compare
Xcc-8004.3834.1 -1.7 -3.0 Pathogenicity-related protein compare
Xcc-8004.2421.1 -1.7 -9.5 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.1434.1 -1.7 -1.1 FIG000859: hypothetical protein YebC compare
Xcc-8004.2412.1 -1.7 -8.9 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.2505.1 -1.7 -8.1 FIG01212099: hypothetical protein compare
Xcc-8004.403.1 -1.7 -4.0 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.5019.1 -1.7 -1.3 FIG01210147: hypothetical protein compare
Xcc-8004.3862.1 -1.7 -4.7 Septum site-determining protein MinC compare
Xcc-8004.4633.1 -1.6 -1.8 FIG01210488: hypothetical protein compare
Xcc-8004.3710.1 -1.6 -1.4 hypothetical protein compare
Xcc-8004.745.1 -1.6 -2.2 VirP protein compare
Xcc-8004.2169.1 -1.6 -2.8 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.2337.1 -1.6 -3.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.3721.1 -1.6 -1.0 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.914.1 -1.6 -4.4 tail-specific protease compare
Xcc-8004.3454.1 -1.6 -4.0 Phage-related integrase compare
Xcc-8004.1763.1 -1.6 -2.5 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2339.1 -1.6 -1.4 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.5363.1 -1.6 -1.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.3479.1 -1.6 -1.7 aklaviketone reductase compare
Xcc-8004.3230.1 -1.6 -2.1 Phage DNA invertase compare
Xcc-8004.2385.1 -1.6 -5.9 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.5366.1 -1.6 -9.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.4426.1 -1.6 -5.2 General secretion pathway protein K compare
Xcc-8004.3854.1 -1.6 -3.5 COG2363 compare
Xcc-8004.2761.1 -1.6 -1.6 FIG01212073: hypothetical protein compare
Xcc-8004.5369.1 -1.5 -4.6 Lipoprotein compare
Xcc-8004.2074.1 -1.5 -3.2 Transcriptional regulator, MerR family compare
Xcc-8004.3576.1 -1.5 -5.3 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.4391.1 -1.5 -2.6 hypothetical protein compare
Xcc-8004.2920.1 -1.5 -5.6 Ferrous iron transport protein B compare
Xcc-8004.2060.1 -1.5 -2.0 Mobile element protein compare
Xcc-8004.1880.1 -1.5 -4.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.248.1 -1.5 -4.3 Nitrogen regulatory protein P-II compare
Xcc-8004.1677.1 -1.5 -2.6 FIG01209993: hypothetical protein compare
Xcc-8004.1792.1 -1.5 -4.4 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.1282.1 -1.5 -3.7 sulfur deprivation response regulator compare
Xcc-8004.772.1 -1.5 -2.7 protease, putative compare
Xcc-8004.1594.1 -1.5 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4557.1 -1.5 -3.2 ABC transporter ATP-binding protein compare
Xcc-8004.1117.1 -1.5 -2.2 hypothetical protein compare
Xcc-8004.412.1 -1.4 -2.2 Putative protein-S-isoprenylcysteine methyltransferase compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta xylem experiments

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=4_days across organisms