Experiment set9S127 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes Location 2 4 dpi (25 plantes)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2945.1 -6.0 -3.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.618.1 -5.4 -3.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.2011.1 -5.2 -3.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2946.1 -5.0 -6.0 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.1205.1 -4.7 -3.3 hypothetical protein compare
Xcc-8004.5020.1 -4.3 -7.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.3281.1 -4.1 -7.4 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1615.1 -4.1 -2.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2318.1 -4.1 -7.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.2711.1 -4.1 -1.8 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.1058.1 -3.9 -3.0 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.2012.1 -3.8 -8.8 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1316.1 -3.7 -3.2 hypothetical protein compare
Xcc-8004.3395.1 -3.6 -2.5 Transcriptional regulator, GntR family compare
Xcc-8004.4620.1 -3.6 -8.9 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4398.1 -3.6 -8.6 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.2387.1 -3.6 -3.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.1964.1 -3.5 -13.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.1967.1 -3.5 -9.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.2944.1 -3.4 -8.9 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.4112.1 -3.4 -4.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2323.1 -3.4 -9.3 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.621.1 -3.4 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.622.1 -3.4 -5.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.3537.1 -3.3 -8.4 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.608.1 -3.2 -10.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.271.1 -3.2 -3.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1962.1 -3.2 -4.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.659.1 -3.1 -2.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.623.1 -3.1 -2.1 Phosphoserine phosphatase compare
Xcc-8004.577.1 -3.1 -6.7 Transcriptional regulator, MarR family compare
Xcc-8004.4439.1 -3.1 -12.0 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3282.1 -3.1 -8.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.2326.1 -3.1 -3.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.657.1 -3.0 -6.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1053.1 -3.0 -7.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1434.1 -3.0 -1.8 FIG000859: hypothetical protein YebC compare
Xcc-8004.2322.1 -2.9 -5.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.1676.1 -2.9 -8.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2316.1 -2.9 -11.4 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.3536.1 -2.9 -5.3 FIG01210913: hypothetical protein compare
Xcc-8004.601.1 -2.9 -7.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3049.1 -2.8 -9.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3612.1 -2.7 -1.5 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.130.1 -2.7 -7.4 hypothetical protein compare
Xcc-8004.957.1 -2.7 -4.7 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1059.1 -2.7 -7.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.2943.1 -2.7 -4.5 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.4824.1 -2.7 -10.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2561.1 -2.7 -9.7 FIG01213638: hypothetical protein compare
Xcc-8004.2957.1 -2.6 -6.7 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.2081.1 -2.6 -4.5 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.1049.1 -2.6 -5.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.2346.1 -2.6 -1.7 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.44.1 -2.5 -17.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.2320.1 -2.5 -5.2 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.2319.1 -2.5 -4.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1955.1 -2.4 -5.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2954.1 -2.4 -10.5 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.43.1 -2.4 -9.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.1372.1 -2.3 -4.0 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3346.1 -2.3 -4.6 hypothetical protein compare
Xcc-8004.2948.1 -2.3 -4.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.399.1 -2.3 -1.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.3939.1 -2.3 -2.7 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
Xcc-8004.3283.1 -2.3 -6.9 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.4732.1 -2.3 -2.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1050.1 -2.3 -2.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.1763.1 -2.3 -3.3 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.270.1 -2.2 -6.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.2942.1 -2.2 -5.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.3054.1 -2.2 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1811.1 -2.2 -2.9 extracellular serine protease compare
Xcc-8004.2217.1 -2.2 -3.9 FIG01209779: hypothetical protein compare
Xcc-8004.4073.1 -2.2 -8.4 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2922.1 -2.2 -2.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1436.1 -2.2 -2.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.3815.1 -2.2 -3.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.2947.1 -2.1 -6.8 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.195.1 -2.1 -1.2 phosphoesterase, putative compare
Xcc-8004.4024.1 -2.1 -5.2 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.3855.1 -2.1 -5.9 FIG01209965: hypothetical protein compare
Xcc-8004.4200.1 -2.1 -2.0 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.2956.1 -2.1 -1.8 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.1839.1 -2.1 -1.8 FIG01210863: hypothetical protein compare
Xcc-8004.461.1 -2.1 -2.4 Transcriptional regulator, MarR family compare
Xcc-8004.998.1 -2.1 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3433.1 -2.0 -6.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.3324.1 -2.0 -3.4 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.1023.1 -1.9 -5.3 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.4430.1 -1.9 -1.1 General secretion pathway protein G compare
Xcc-8004.1511.1 -1.9 -2.6 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4204.1 -1.9 -2.4 FIG01210014: hypothetical protein compare
Xcc-8004.4313.1 -1.9 -2.6 hypothetical protein compare
Xcc-8004.1359.1 -1.9 -5.5 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.456.1 -1.9 -1.6 carbonic anhydrase, family 3 compare
Xcc-8004.1060.1 -1.9 -6.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.2795.1 -1.9 -5.0 FIG01211616: hypothetical protein compare
Xcc-8004.4046.1 -1.9 -8.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2930.1 -1.9 -1.7 hypothetical protein compare
Xcc-8004.2505.1 -1.9 -8.7 FIG01212099: hypothetical protein compare
Xcc-8004.4596.1 -1.9 -6.0 hypothetical protein compare
Xcc-8004.1010.1 -1.9 -4.5 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.1680.1 -1.9 -6.0 FIG006611: nucleotidyltransferase compare
Xcc-8004.1057.1 -1.8 -7.3 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.2421.1 -1.8 -10.8 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.2931.1 -1.8 -4.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.1437.1 -1.8 -5.2 Kup system potassium uptake protein compare
Xcc-8004.2420.1 -1.8 -4.9 PHA synthase subunit compare
Xcc-8004.2929.1 -1.8 -5.6 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.1016.1 -1.8 -4.6 Sucrose phosphorylase (EC 2.4.1.7) compare
Xcc-8004.3595.1 -1.8 -1.6 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.2327.1 -1.8 -4.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.689.1 -1.7 -1.0 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.1365.1 -1.7 -1.3 FIG01211058: hypothetical protein compare
Xcc-8004.1022.1 -1.7 -4.9 hypothetical protein compare
Xcc-8004.2977.1 -1.7 -11.5 hypothetical protein compare
Xcc-8004.1414.1 -1.7 -0.9 Lactoylglutathione lyase and related lyases compare
Xcc-8004.3018.1 -1.7 -2.2 hypothetical protein compare
Xcc-8004.1336.1 -1.7 -4.7 two-component system sensor protein compare
Xcc-8004.4481.1 -1.7 -4.3 hypothetical protein compare
Xcc-8004.2384.1 -1.7 -8.2 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.1658.1 -1.7 -5.6 hypothetical protein compare
Xcc-8004.5133.1 -1.7 -1.3 FIG01212313: hypothetical protein compare
Xcc-8004.1904.1 -1.7 -2.8 two-component system regulatory protein compare
Xcc-8004.1900.1 -1.6 -1.5 Acyl-CoA thioester hydrolase compare
Xcc-8004.3862.1 -1.6 -4.9 Septum site-determining protein MinC compare
Xcc-8004.280.1 -1.6 -4.0 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.4185.1 -1.6 -4.1 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative compare
Xcc-8004.1027.1 -1.6 -1.1 Two-component system sensor protein compare
Xcc-8004.1056.1 -1.6 -3.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.1028.1 -1.6 -4.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.4976.1 -1.5 -7.5 hypothetical protein compare
Xcc-8004.451.1 -1.5 -2.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.4000.1 -1.5 -2.1 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.2079.1 -1.5 -2.4 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.4025.1 -1.5 -7.4 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4556.1 -1.4 -1.6 Lipoprotein releasing system ATP-binding protein LolD compare
Xcc-8004.1400.1 -1.4 -1.5 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.2569.1 -1.4 -1.7 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.914.1 -1.4 -4.7 tail-specific protease compare
Xcc-8004.1871.1 -1.4 -2.2 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2357.1 -1.4 -2.6 Segregation and condensation protein B compare
Xcc-8004.4423.1 -1.3 -1.3 General secretion pathway protein N compare
Xcc-8004.2168.1 -1.3 -3.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.2447.1 -1.3 -7.8 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.1236.1 -1.3 -4.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3803.1 -1.3 -1.4 hypothetical protein compare
Xcc-8004.3816.1 -1.3 -5.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.3978.1 -1.3 -2.0 FIG01211989: hypothetical protein compare
Xcc-8004.4039.1 -1.3 -2.3 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.5100.1 -1.3 -1.6 FIG01211066: hypothetical protein compare
Xcc-8004.4427.1 -1.3 -2.1 General secretion pathway protein J compare
Xcc-8004.1696.1 -1.3 -1.3 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.4558.1 -1.3 -2.3 ABC transporter permease compare
Xcc-8004.3663.1 -1.3 -3.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.2949.1 -1.3 -2.0 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.3130.1 -1.2 -4.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.4250.1 -1.2 -0.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.395.1 -1.2 -3.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Xcc-8004.1026.1 -1.2 -1.9 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.3976.1 -1.2 -3.0 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1896.1 -1.2 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3898.1 -1.2 -0.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.4768.1 -1.2 -1.5 FIG01210642: hypothetical protein compare
Xcc-8004.4322.1 -1.2 -1.3 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.505.1 -1.2 -4.8 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.4019.1 -1.2 -2.9 Molybdenum cofactor biosynthesis protein MoaD compare
Xcc-8004.1685.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.3361.1 -1.2 -3.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.93.1 -1.2 -1.7 FIG01211857: hypothetical protein compare
Xcc-8004.323.1 -1.2 -1.8 FIG01210738: hypothetical protein compare
Xcc-8004.1567.1 -1.1 -3.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.3979.1 -1.1 -4.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3120.1 -1.1 -2.3 RNA-binding protein Hfq compare
Xcc-8004.2920.1 -1.1 -4.4 Ferrous iron transport protein B compare
Xcc-8004.1502.1 -1.1 -1.3 twitching motility protein PilG compare
Xcc-8004.2385.1 -1.1 -5.0 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.1138.1 -1.1 -3.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.1241.1 -1.1 -3.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3479.1 -1.1 -1.0 aklaviketone reductase compare
Xcc-8004.718.1 -1.1 -0.7 hypothetical protein compare
Xcc-8004.4327.1 -1.1 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4049.1 -1.1 -3.0 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.1512.1 -1.1 -2.1 RNA polymerase sigma-70 factor compare
Xcc-8004.5140.1 -1.1 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.402.1 -1.1 -2.6 FIG01209770: hypothetical protein compare
Xcc-8004.337.1 -1.1 -1.6 ATPase, AFG1 family compare
Xcc-8004.290.1 -1.1 -2.9 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.1809.1 -1.1 -1.1 extracellular serine protease compare
Xcc-8004.5365.1 -1.1 -4.3 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.1282.1 -1.1 -3.4 sulfur deprivation response regulator compare
Xcc-8004.4199.1 -1.1 -5.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Xcc-8004.3310.1 -1.1 -3.3 Chromosome partition protein smc compare
Xcc-8004.358.1 -1.1 -1.5 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Xcc-8004.1966.1 -1.1 -2.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3459.1 -1.1 -1.5 FIG01212836: hypothetical protein compare
Xcc-8004.2337.1 -1.1 -3.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.288.1 -1.1 -0.9 Ferredoxin compare
Xcc-8004.2950.1 -1.1 -2.5 His repressor compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta xylem experiments

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=4_days across organisms