Experiment set9S104 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes Location 3 6 dpi (25 plantes)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2339.1 -6.0 -2.4 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.622.1 -5.7 -3.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2011.1 -5.7 -2.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2012.1 -5.5 -3.8 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1380.1 -5.5 -2.2 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.2946.1 -5.4 -3.7 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.2387.1 -5.3 -3.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.1059.1 -5.3 -3.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.2945.1 -5.3 -2.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.2323.1 -5.2 -3.6 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.1082.1 -5.1 -2.0 FIG01211203: hypothetical protein compare
Xcc-8004.957.1 -5.0 -5.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1676.1 -5.0 -8.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.1049.1 -4.9 -8.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.2320.1 -4.8 -4.7 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.657.1 -4.8 -8.0 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1058.1 -4.8 -2.4 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1060.1 -4.7 -10.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.621.1 -4.7 -6.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.4398.1 -4.7 -3.2 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.2949.1 -4.7 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.3054.1 -4.6 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1615.1 -4.5 -2.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1511.1 -4.5 -3.2 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.451.1 -4.4 -5.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.1053.1 -4.4 -6.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1964.1 -4.3 -12.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.3282.1 -4.3 -6.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.2944.1 -4.3 -8.7 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.1336.1 -4.3 -9.6 two-component system sensor protein compare
Xcc-8004.5020.1 -4.3 -6.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.1010.1 -4.3 -6.5 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.2316.1 -4.3 -14.3 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.1050.1 -4.3 -4.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.1057.1 -4.2 -13.1 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.271.1 -4.2 -2.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1763.1 -4.1 -5.6 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.4510.1 -4.1 -1.6 ATP binding component of ABC-transporter compare
Xcc-8004.43.1 -4.0 -8.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.577.1 -4.0 -7.0 Transcriptional regulator, MarR family compare
Xcc-8004.3395.1 -4.0 -2.7 Transcriptional regulator, GntR family compare
Xcc-8004.4439.1 -3.9 -12.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3855.1 -3.9 -7.0 FIG01209965: hypothetical protein compare
Xcc-8004.4112.1 -3.9 -2.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4620.1 -3.9 -11.3 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.505.1 -3.8 -10.1 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.3281.1 -3.8 -7.9 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4026.1 -3.8 -7.5 FIG01209666: hypothetical protein compare
Xcc-8004.1873.1 -3.8 -3.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.3536.1 -3.8 -7.8 FIG01210913: hypothetical protein compare
Xcc-8004.3324.1 -3.8 -5.5 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2954.1 -3.8 -14.4 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.4073.1 -3.7 -11.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.236.1 -3.7 -1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.2319.1 -3.7 -4.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1967.1 -3.7 -10.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.44.1 -3.7 -24.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.4481.1 -3.6 -7.7 hypothetical protein compare
Xcc-8004.2948.1 -3.6 -7.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.1023.1 -3.6 -8.2 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.2977.1 -3.6 -21.1 hypothetical protein compare
Xcc-8004.270.1 -3.5 -7.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.2957.1 -3.5 -9.8 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.2327.1 -3.5 -9.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.1236.1 -3.4 -8.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1334.1 -3.4 -1.6 hypothetical protein compare
Xcc-8004.1955.1 -3.4 -7.3 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.403.1 -3.4 -5.1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.659.1 -3.4 -2.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.5363.1 -3.4 -3.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.1710.1 -3.3 -5.6 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.1858.1 -3.3 -1.1 FIG01211170: hypothetical protein compare
Xcc-8004.2318.1 -3.3 -5.1 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.3049.1 -3.3 -10.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2947.1 -3.2 -6.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.2322.1 -3.1 -4.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.4824.1 -3.1 -12.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4530.1 -3.1 -4.6 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.618.1 -3.1 -3.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.2931.1 -3.1 -4.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.4844.1 -3.1 -1.2 FIG01210764: hypothetical protein compare
Xcc-8004.4013.1 -3.0 -2.1 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.4596.1 -3.0 -8.4 hypothetical protein compare
Xcc-8004.1022.1 -3.0 -5.5 hypothetical protein compare
Xcc-8004.4024.1 -3.0 -6.4 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.4248.1 -3.0 -4.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.4738.1 -2.9 -11.3 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2943.1 -2.9 -4.6 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.4025.1 -2.9 -10.5 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3310.1 -2.8 -5.9 Chromosome partition protein smc compare
Xcc-8004.1205.1 -2.8 -2.9 hypothetical protein compare
Xcc-8004.4225.1 -2.8 -1.9 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.1086.1 -2.8 -2.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2561.1 -2.8 -10.1 FIG01213638: hypothetical protein compare
Xcc-8004.608.1 -2.8 -6.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.3283.1 -2.8 -8.0 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.4200.1 -2.7 -2.1 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.854.1 -2.7 -2.1 Cytosine deaminase (EC 3.5.4.1) compare
Xcc-8004.4923.1 -2.7 -3.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Xcc-8004.3576.1 -2.7 -9.7 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1359.1 -2.7 -7.0 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.5368.1 -2.7 -3.4 FIG01210868: hypothetical protein compare
Xcc-8004.1559.1 -2.7 -5.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.1016.1 -2.6 -5.3 Sucrose phosphorylase (EC 2.4.1.7) compare
Xcc-8004.2081.1 -2.6 -4.2 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2385.1 -2.6 -9.2 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.2326.1 -2.6 -3.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.4046.1 -2.5 -10.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.402.1 -2.5 -5.5 FIG01209770: hypothetical protein compare
Xcc-8004.4945.1 -2.5 -1.0 FIG01210349: hypothetical protein compare
Xcc-8004.713.1 -2.5 -1.3 FIG01210186: hypothetical protein compare
Xcc-8004.1792.1 -2.5 -8.1 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.601.1 -2.5 -5.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3537.1 -2.5 -3.3 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.826.1 -2.4 -9.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.3492.1 -2.4 -0.9 FIG01211425: hypothetical protein compare
Xcc-8004.3230.1 -2.4 -2.2 Phage DNA invertase compare
Xcc-8004.2929.1 -2.4 -3.3 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.5051.1 -2.4 -2.8 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.2449.1 -2.4 -6.4 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.2420.1 -2.4 -6.2 PHA synthase subunit compare
Xcc-8004.4836.1 -2.4 -5.4 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1138.1 -2.4 -3.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.2168.1 -2.3 -4.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3394.1 -2.3 -2.7 hypothetical protein compare
Xcc-8004.3863.1 -2.3 -4.8 Septum site-determining protein MinD compare
Xcc-8004.1132.1 -2.3 -1.9 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.3663.1 -2.3 -2.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.1437.1 -2.3 -6.4 Kup system potassium uptake protein compare
Xcc-8004.797.1 -2.3 -1.4 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.2337.1 -2.3 -5.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.5082.1 -2.3 -4.4 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.4204.1 -2.2 -1.9 FIG01210014: hypothetical protein compare
Xcc-8004.3834.1 -2.2 -4.1 Pathogenicity-related protein compare
Xcc-8004.2421.1 -2.2 -12.6 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.1027.1 -2.2 -1.4 Two-component system sensor protein compare
Xcc-8004.130.1 -2.2 -5.5 hypothetical protein compare
Xcc-8004.249.1 -2.1 -8.6 Ammonium transporter compare
Xcc-8004.337.1 -2.1 -2.8 ATPase, AFG1 family compare
Xcc-8004.2879.1 -2.1 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.770.1 -2.1 -1.8 hypothetical protein compare
Xcc-8004.2447.1 -2.1 -10.6 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.4477.1 -2.1 -1.8 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.5317.1 -2.1 -1.7 FIG01210332: hypothetical protein compare
Xcc-8004.1000.1 -2.1 -2.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3072.1 -2.1 -2.5 hypothetical protein compare
Xcc-8004.1962.1 -2.1 -1.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.2505.1 -2.0 -7.7 FIG01212099: hypothetical protein compare
Xcc-8004.5253.1 -2.0 -1.1 hypothetical protein compare
Xcc-8004.1249.1 -2.0 -4.5 Transcriptional regulator compare
Xcc-8004.2259.1 -2.0 -5.7 PhbF compare
Xcc-8004.1282.1 -2.0 -4.0 sulfur deprivation response regulator compare
Xcc-8004.1871.1 -2.0 -3.2 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.968.1 -2.0 -7.7 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.1028.1 -2.0 -3.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.4423.1 -2.0 -1.2 General secretion pathway protein N compare
Xcc-8004.934.1 -1.9 -1.5 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.2942.1 -1.9 -3.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.4430.1 -1.9 -1.4 General secretion pathway protein G compare
Xcc-8004.2922.1 -1.9 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2217.1 -1.9 -4.4 FIG01209779: hypothetical protein compare
Xcc-8004.2215.1 -1.9 -1.0 hypothetical protein compare
Xcc-8004.1241.1 -1.9 -2.6 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3346.1 -1.9 -3.2 hypothetical protein compare
Xcc-8004.3433.1 -1.9 -5.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.4871.1 -1.9 -1.0 Phage tail completion protein compare
Xcc-8004.846.1 -1.9 -2.0 Protein of unknown function DUF484 compare
Xcc-8004.3752.1 -1.9 -1.1 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.5365.1 -1.9 -5.8 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.3978.1 -1.8 -2.8 FIG01211989: hypothetical protein compare
Xcc-8004.2131.1 -1.8 -2.1 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.2086.1 -1.8 -1.5 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.840.1 -1.8 -9.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.288.1 -1.8 -1.6 Ferredoxin compare
Xcc-8004.1056.1 -1.8 -2.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.4426.1 -1.8 -6.3 General secretion pathway protein K compare
Xcc-8004.4049.1 -1.8 -3.5 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.2577.1 -1.8 -2.7 FIG034647: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.2260.1 -1.7 -4.5 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.3862.1 -1.7 -4.8 Septum site-determining protein MinC compare
Xcc-8004.5369.1 -1.7 -4.4 Lipoprotein compare
Xcc-8004.1662.1 -1.7 -7.4 RNA polymerase sigma-54 factor RpoN compare
Xcc-8004.4327.1 -1.7 -0.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3303.1 -1.7 -2.5 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.3156.1 -1.7 -4.7 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.4428.1 -1.7 -1.6 General secretion pathway protein I compare
Xcc-8004.4806.1 -1.7 -1.7 FIG01211609: hypothetical protein compare
Xcc-8004.3965.1 -1.7 -2.8 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Xcc-8004.2956.1 -1.7 -1.2 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.2450.1 -1.7 -9.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.5098.1 -1.7 -1.8 hypothetical protein compare
Xcc-8004.1658.1 -1.7 -4.8 hypothetical protein compare
Xcc-8004.504.1 -1.7 -5.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Xcc-8004.3722.1 -1.7 -0.8 HrpB7 protein compare
Xcc-8004.1436.1 -1.7 -1.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.4814.1 -1.7 -2.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.4732.1 -1.7 -1.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1133.1 -1.7 -1.3 Rubredoxin compare
Xcc-8004.4737.1 -1.7 -3.9 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.5366.1 -1.6 -8.7 Uncharacterized ABC transporter, periplasmic component YrbD compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta xylem experiments

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=6_days across organisms