Experiment set9S103 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes Location 3 4 dpi (25 plantes)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.385.1 -5.8 -2.7 FIG01212287: hypothetical protein compare
Xcc-8004.622.1 -5.2 -3.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2011.1 -5.2 -2.7 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.1049.1 -5.2 -5.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.1676.1 -4.9 -4.8 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2387.1 -4.7 -3.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.608.1 -4.6 -4.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.2956.1 -4.4 -2.0 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.1059.1 -4.4 -5.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.3537.1 -4.4 -3.0 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.2946.1 -4.4 -4.3 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.645.1 -4.4 -1.2 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.2948.1 -4.2 -6.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.2323.1 -4.2 -5.7 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.2086.1 -4.2 -2.2 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.1064.1 -4.1 -2.1 hypothetical protein compare
Xcc-8004.621.1 -4.1 -5.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.4620.1 -4.1 -6.8 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1053.1 -4.0 -3.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.4225.1 -4.0 -1.8 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.924.1 -4.0 -2.1 FIG01200701: possible membrane protein compare
Xcc-8004.957.1 -4.0 -5.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1615.1 -4.0 -2.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2954.1 -4.0 -10.6 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.3536.1 -4.0 -6.4 FIG01210913: hypothetical protein compare
Xcc-8004.618.1 -3.9 -3.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.2079.1 -3.9 -3.8 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.601.1 -3.9 -3.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.2169.1 -3.9 -2.7 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1964.1 -3.9 -10.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.1511.1 -3.9 -2.8 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2942.1 -3.7 -5.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.271.1 -3.7 -2.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.4439.1 -3.7 -9.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.2322.1 -3.7 -6.1 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.429.1 -3.7 -1.7 hypothetical protein compare
Xcc-8004.657.1 -3.7 -7.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2957.1 -3.7 -8.8 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.1967.1 -3.6 -6.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.585.1 -3.6 -1.6 Na(+) H(+) antiporter subunit F compare
Xcc-8004.577.1 -3.6 -6.4 Transcriptional regulator, MarR family compare
Xcc-8004.2110.1 -3.6 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3395.1 -3.6 -2.4 Transcriptional regulator, GntR family compare
Xcc-8004.2947.1 -3.5 -5.9 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.165.1 -3.5 -1.3 hypothetical protein compare
Xcc-8004.4530.1 -3.5 -4.6 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.456.1 -3.5 -1.6 carbonic anhydrase, family 3 compare
Xcc-8004.2012.1 -3.5 -7.9 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.4776.1 -3.5 -2.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.4481.1 -3.4 -6.2 hypothetical protein compare
Xcc-8004.2931.1 -3.4 -4.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.4026.1 -3.4 -7.2 FIG01209666: hypothetical protein compare
Xcc-8004.1616.1 -3.4 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.1205.1 -3.4 -2.3 hypothetical protein compare
Xcc-8004.44.1 -3.3 -22.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.1085.1 -3.3 -1.7 FIG01212308: hypothetical protein compare
Xcc-8004.1361.1 -3.3 -1.2 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.2319.1 -3.3 -4.5 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.2944.1 -3.3 -8.2 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.1057.1 -3.3 -10.8 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.2318.1 -3.3 -6.6 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.4423.1 -3.3 -1.2 General secretion pathway protein N compare
Xcc-8004.4073.1 -3.3 -10.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1559.1 -3.2 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.43.1 -3.2 -7.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.3855.1 -3.1 -7.0 FIG01209965: hypothetical protein compare
Xcc-8004.4181.1 -3.1 -1.1 Molybdenum cofactor biosynthesis protein MoaB compare
Xcc-8004.1236.1 -3.1 -6.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1060.1 -3.1 -6.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.4596.1 -3.1 -8.8 hypothetical protein compare
Xcc-8004.1010.1 -3.0 -5.7 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.1016.1 -3.0 -6.5 Sucrose phosphorylase (EC 2.4.1.7) compare
Xcc-8004.951.1 -2.9 -1.1 General secretion pathway protein M compare
Xcc-8004.659.1 -2.9 -2.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2327.1 -2.9 -7.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.4737.1 -2.9 -3.5 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.3013.1 -2.9 -2.4 hypothetical protein compare
Xcc-8004.1955.1 -2.9 -5.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1249.1 -2.9 -5.1 Transcriptional regulator compare
Xcc-8004.2320.1 -2.9 -6.4 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.451.1 -2.8 -4.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.3049.1 -2.8 -10.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2977.1 -2.8 -17.2 hypothetical protein compare
Xcc-8004.2783.1 -2.8 -2.5 FIG01209963: hypothetical protein compare
Xcc-8004.3815.1 -2.8 -3.4 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4428.1 -2.8 -2.0 General secretion pathway protein I compare
Xcc-8004.130.1 -2.8 -5.0 hypothetical protein compare
Xcc-8004.1434.1 -2.8 -1.4 FIG000859: hypothetical protein YebC compare
Xcc-8004.94.1 -2.8 -1.4 Transcriptional regulator, LuxR family compare
Xcc-8004.340.1 -2.8 -2.4 Organic hydroperoxide resistance protein compare
Xcc-8004.2316.1 -2.7 -9.3 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.4752.1 -2.7 -2.3 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.3401.1 -2.7 -2.0 FIG01209914: hypothetical protein compare
Xcc-8004.3346.1 -2.7 -3.2 hypothetical protein compare
Xcc-8004.4675.1 -2.7 -1.0 FIG01211280: hypothetical protein compare
Xcc-8004.4253.1 -2.7 -1.7 Transcriptional regulator, LysR family compare
Xcc-8004.4824.1 -2.7 -10.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4200.1 -2.6 -2.0 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3282.1 -2.6 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.4025.1 -2.6 -9.3 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4102.1 -2.6 -1.6 FIG01211949: hypothetical protein compare
Xcc-8004.3283.1 -2.6 -8.2 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.1710.1 -2.6 -4.3 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2081.1 -2.6 -3.1 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2421.1 -2.6 -14.9 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.797.1 -2.6 -1.3 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.4398.1 -2.6 -5.8 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.1336.1 -2.6 -8.0 two-component system sensor protein compare
Xcc-8004.5368.1 -2.6 -3.1 FIG01210868: hypothetical protein compare
Xcc-8004.3324.1 -2.6 -4.3 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2420.1 -2.6 -6.7 PHA synthase subunit compare
Xcc-8004.403.1 -2.6 -3.0 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.1058.1 -2.5 -1.8 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.3942.1 -2.5 -1.6 RelE/StbE replicon stabilization toxin compare
Xcc-8004.4480.1 -2.5 -9.0 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.337.1 -2.5 -2.4 ATPase, AFG1 family compare
Xcc-8004.4738.1 -2.5 -8.8 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.1680.1 -2.5 -7.0 FIG006611: nucleotidyltransferase compare
Xcc-8004.2447.1 -2.4 -11.4 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.2561.1 -2.4 -8.4 FIG01213638: hypothetical protein compare
Xcc-8004.2337.1 -2.4 -5.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4322.1 -2.4 -1.2 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.2950.1 -2.4 -4.1 His repressor compare
Xcc-8004.3642.1 -2.4 -1.1 FIG01211227: hypothetical protein compare
Xcc-8004.3582.1 -2.4 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2713.1 -2.3 -0.9 Nitrate/nitrite transporter compare
Xcc-8004.3863.1 -2.3 -4.7 Septum site-determining protein MinD compare
Xcc-8004.505.1 -2.3 -5.3 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.826.1 -2.3 -8.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.3054.1 -2.3 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4112.1 -2.2 -4.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1727.1 -2.2 -3.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4503.1 -2.2 -3.0 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.1282.1 -2.2 -4.0 sulfur deprivation response regulator compare
Xcc-8004.2945.1 -2.2 -1.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.3281.1 -2.2 -4.0 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.5020.1 -2.2 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.1660.1 -2.2 -0.8 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.1748.1 -2.2 -3.6 hypothetical protein compare
Xcc-8004.4024.1 -2.1 -5.6 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.3479.1 -2.1 -1.4 aklaviketone reductase compare
Xcc-8004.2385.1 -2.1 -8.4 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.399.1 -2.1 -1.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.589.1 -2.1 -2.1 hypothetical protein compare
Xcc-8004.1437.1 -2.1 -5.5 Kup system potassium uptake protein compare
Xcc-8004.1436.1 -2.1 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.3794.1 -2.1 -1.2 Mobile element protein compare
Xcc-8004.1003.1 -2.0 -1.2 FIG027190: Putative transmembrane protein compare
Xcc-8004.3834.1 -2.0 -3.1 Pathogenicity-related protein compare
Xcc-8004.93.1 -2.0 -1.6 FIG01211857: hypothetical protein compare
Xcc-8004.4498.1 -2.0 -2.3 Mobile element protein compare
Xcc-8004.1359.1 -2.0 -5.0 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4227.1 -2.0 -2.7 ThiJ/PfpI family protein compare
Xcc-8004.1241.1 -2.0 -3.8 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2937.1 -2.0 -7.8 Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) compare
Xcc-8004.249.1 -2.0 -7.4 Ammonium transporter compare
Xcc-8004.401.1 -2.0 -1.7 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.5253.1 -1.9 -1.0 hypothetical protein compare
Xcc-8004.270.1 -1.9 -4.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.1028.1 -1.9 -3.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.4270.1 -1.9 -4.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
Xcc-8004.1026.1 -1.9 -2.4 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.4204.1 -1.9 -1.9 FIG01210014: hypothetical protein compare
Xcc-8004.1763.1 -1.9 -3.9 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.288.1 -1.9 -1.1 Ferredoxin compare
Xcc-8004.977.1 -1.9 -3.1 hypothetical protein compare
Xcc-8004.5365.1 -1.9 -4.9 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.1954.1 -1.9 -3.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.402.1 -1.9 -3.7 FIG01209770: hypothetical protein compare
Xcc-8004.290.1 -1.9 -4.6 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.1023.1 -1.9 -5.2 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.4715.1 -1.9 -3.2 FIG00353010: hypothetical protein compare
Xcc-8004.3310.1 -1.8 -4.4 Chromosome partition protein smc compare
Xcc-8004.4665.1 -1.8 -1.3 FIG01211765: hypothetical protein compare
Xcc-8004.3492.1 -1.8 -0.8 FIG01211425: hypothetical protein compare
Xcc-8004.703.1 -1.8 -1.0 hypothetical protein compare
Xcc-8004.4046.1 -1.8 -8.0 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3862.1 -1.8 -4.6 Septum site-determining protein MinC compare
Xcc-8004.4425.1 -1.8 -3.4 General secretion pathway protein L compare
Xcc-8004.252.1 -1.8 -4.5 Nitrogen regulation protein NtrC compare
Xcc-8004.4945.1 -1.8 -0.8 FIG01210349: hypothetical protein compare
Xcc-8004.1050.1 -1.8 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.5268.1 -1.8 -1.6 Mobile element protein compare
Xcc-8004.1372.1 -1.8 -3.0 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2929.1 -1.8 -4.7 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.4890.1 -1.8 -9.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.1880.1 -1.8 -5.3 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.502.1 -1.8 -2.7 Biotin synthesis protein BioH compare
Xcc-8004.2943.1 -1.7 -3.4 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.3433.1 -1.7 -5.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1962.1 -1.7 -1.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.1914.1 -1.7 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.27.1 -1.7 -1.4 hypothetical protein compare
Xcc-8004.2450.1 -1.7 -9.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.1658.1 -1.7 -6.4 hypothetical protein compare
Xcc-8004.2326.1 -1.7 -2.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.80.1 -1.7 -1.2 hypothetical protein compare
Xcc-8004.48.1 -1.7 -2.2 FIG01212903: hypothetical protein compare
Xcc-8004.2839.1 -1.7 -0.9 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.764.1 -1.7 -1.8 FIG01213873: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta xylem experiments

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=4_days across organisms