Experiment set9S101 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes Location 2 4 dpi (25 plantes)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2387.1 -5.5 -3.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.1615.1 -4.8 -3.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4112.1 -3.9 -3.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2946.1 -3.5 -5.6 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.4620.1 -3.4 -10.3 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4398.1 -3.4 -8.7 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.622.1 -3.3 -6.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.4481.1 -3.2 -6.7 hypothetical protein compare
Xcc-8004.4806.1 -3.0 -2.7 FIG01211609: hypothetical protein compare
Xcc-8004.4430.1 -3.0 -2.4 General secretion pathway protein G compare
Xcc-8004.618.1 -3.0 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.2012.1 -2.8 -8.7 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.657.1 -2.8 -7.5 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1049.1 -2.8 -9.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.3536.1 -2.7 -8.1 FIG01210913: hypothetical protein compare
Xcc-8004.178.1 -2.7 -2.5 hypothetical protein compare
Xcc-8004.1050.1 -2.4 -4.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.2319.1 -2.4 -4.7 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.94.1 -2.4 -1.5 Transcriptional regulator, LuxR family compare
Xcc-8004.1964.1 -2.4 -11.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.3855.1 -2.3 -8.4 FIG01209965: hypothetical protein compare
Xcc-8004.659.1 -2.3 -4.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4439.1 -2.3 -10.1 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.271.1 -2.3 -3.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2011.1 -2.3 -2.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4026.1 -2.3 -5.3 FIG01209666: hypothetical protein compare
Xcc-8004.1334.1 -2.2 -2.0 hypothetical protein compare
Xcc-8004.2320.1 -2.2 -6.6 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.2943.1 -2.2 -6.9 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.2944.1 -2.2 -8.7 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.1437.1 -2.2 -6.7 Kup system potassium uptake protein compare
Xcc-8004.4477.1 -2.2 -1.8 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.1955.1 -2.2 -5.2 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1616.1 -2.2 -1.5 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2323.1 -2.2 -7.6 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.1967.1 -2.1 -7.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.3281.1 -2.1 -6.5 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.957.1 -2.1 -3.7 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.621.1 -2.1 -4.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.577.1 -2.1 -6.6 Transcriptional regulator, MarR family compare
Xcc-8004.288.1 -2.1 -2.1 Ferredoxin compare
Xcc-8004.3582.1 -2.0 -2.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2316.1 -2.0 -11.5 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.130.1 -2.0 -7.6 hypothetical protein compare
Xcc-8004.2945.1 -2.0 -1.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.4596.1 -2.0 -8.3 hypothetical protein compare
Xcc-8004.1436.1 -1.9 -1.8 Holliday junction DNA helicase RuvA compare
Xcc-8004.2922.1 -1.9 -2.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4428.1 -1.9 -2.9 General secretion pathway protein I compare
Xcc-8004.1710.1 -1.9 -4.0 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2505.1 -1.9 -9.9 FIG01212099: hypothetical protein compare
Xcc-8004.5326.1 -1.9 -1.6 Mobile element protein compare
Xcc-8004.1053.1 -1.9 -5.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.3537.1 -1.9 -5.7 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.3282.1 -1.9 -6.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.4025.1 -1.9 -8.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.2561.1 -1.8 -6.6 FIG01213638: hypothetical protein compare
Xcc-8004.1359.1 -1.8 -5.1 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1060.1 -1.8 -7.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.3049.1 -1.8 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1619.1 -1.8 -3.0 PspA/IM30 family protein compare
Xcc-8004.3395.1 -1.8 -3.0 Transcriptional regulator, GntR family compare
Xcc-8004.601.1 -1.8 -7.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1027.1 -1.8 -2.1 Two-component system sensor protein compare
Xcc-8004.502.1 -1.8 -2.9 Biotin synthesis protein BioH compare
Xcc-8004.4948.1 -1.8 -3.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.2079.1 -1.8 -4.4 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3792.1 -1.8 -1.9 Mobile element protein compare
Xcc-8004.1057.1 -1.8 -8.5 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.3324.1 -1.8 -4.5 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.1108.1 -1.8 -2.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.2497.1 -1.7 -1.3 Mobile element protein compare
Xcc-8004.5365.1 -1.7 -6.3 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.2931.1 -1.7 -3.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.2957.1 -1.7 -6.7 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.2948.1 -1.7 -5.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.5133.1 -1.6 -1.5 FIG01212313: hypothetical protein compare
Xcc-8004.3821.1 -1.6 -4.1 Lipoprotein signal peptidase (EC 3.4.23.36) compare
Xcc-8004.451.1 -1.6 -3.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.1028.1 -1.6 -4.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.1132.1 -1.6 -1.3 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.44.1 -1.6 -12.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.409.1 -1.6 -3.4 hypothetical protein compare
Xcc-8004.1022.1 -1.6 -5.1 hypothetical protein compare
Xcc-8004.4073.1 -1.6 -7.4 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.4024.1 -1.5 -3.9 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.1059.1 -1.5 -5.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.1962.1 -1.5 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.2318.1 -1.5 -4.1 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.689.1 -1.5 -1.3 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.950.1 -1.5 -1.3 General secretion pathway protein L compare
Xcc-8004.1058.1 -1.5 -2.6 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.2947.1 -1.5 -5.3 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.2260.1 -1.5 -4.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.4170.1 -1.4 -1.6 LSU ribosomal protein L25p compare
Xcc-8004.934.1 -1.4 -1.8 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.337.1 -1.4 -2.3 ATPase, AFG1 family compare
Xcc-8004.2420.1 -1.4 -5.0 PHA synthase subunit compare
Xcc-8004.2322.1 -1.4 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.3955.1 -1.4 -4.7 HflK protein compare
Xcc-8004.764.1 -1.4 -2.9 FIG01213873: hypothetical protein compare
Xcc-8004.4824.1 -1.4 -6.3 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1747.1 -1.4 -2.2 FIG01210249: hypothetical protein compare
Xcc-8004.2327.1 -1.4 -5.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.4264.1 -1.4 -1.5 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.1361.1 -1.4 -1.5 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.1676.1 -1.4 -5.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2385.1 -1.4 -6.9 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.1568.1 -1.4 -1.2 Glycine cleavage system H protein compare
Xcc-8004.1056.1 -1.3 -2.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.2954.1 -1.3 -7.7 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.43.1 -1.3 -4.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.1871.1 -1.3 -2.4 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1205.1 -1.3 -2.1 hypothetical protein compare
Xcc-8004.3346.1 -1.3 -3.0 hypothetical protein compare
Xcc-8004.986.1 -1.3 -2.6 hypothetical protein compare
Xcc-8004.1222.1 -1.3 -2.2 Glyoxalase family protein compare
Xcc-8004.3834.1 -1.3 -3.5 Pathogenicity-related protein compare
Xcc-8004.1010.1 -1.3 -3.9 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.4630.1 -1.3 -1.6 FIG01210108: hypothetical protein compare
Xcc-8004.4738.1 -1.3 -6.3 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.1241.1 -1.3 -3.8 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.608.1 -1.3 -4.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.3433.1 -1.3 -4.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.5253.1 -1.3 -1.2 hypothetical protein compare
Xcc-8004.3283.1 -1.2 -6.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.3862.1 -1.2 -3.4 Septum site-determining protein MinC compare
Xcc-8004.1372.1 -1.2 -3.3 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.29.1 -1.2 -3.9 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.1023.1 -1.2 -4.6 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.403.1 -1.2 -2.0 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.2421.1 -1.2 -8.0 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.5098.1 -1.2 -2.2 hypothetical protein compare
Xcc-8004.1434.1 -1.2 -1.4 FIG000859: hypothetical protein YebC compare
Xcc-8004.4329.1 -1.2 -0.7 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.1658.1 -1.2 -4.4 hypothetical protein compare
Xcc-8004.3230.1 -1.2 -2.3 Phage DNA invertase compare
Xcc-8004.2579.1 -1.2 -2.6 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.2059.1 -1.2 -2.2 hypothetical protein compare
Xcc-8004.2219.1 -1.2 -3.6 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.1336.1 -1.2 -4.9 two-component system sensor protein compare
Xcc-8004.968.1 -1.2 -5.5 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.2105.1 -1.1 -3.4 FIG01210123: hypothetical protein compare
Xcc-8004.1727.1 -1.1 -2.5 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1873.1 -1.1 -2.1 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.270.1 -1.1 -3.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.2920.1 -1.1 -5.3 Ferrous iron transport protein B compare
Xcc-8004.505.1 -1.1 -5.2 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.4063.1 -1.1 -3.9 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Xcc-8004.249.1 -1.1 -6.0 Ammonium transporter compare
Xcc-8004.5222.1 -1.1 -3.5 hypothetical protein compare
Xcc-8004.3054.1 -1.1 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4225.1 -1.1 -1.3 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.2754.1 -1.1 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.2384.1 -1.1 -6.4 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.4046.1 -1.1 -5.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.837.1 -1.1 -1.9 FIG01210690: hypothetical protein compare
Xcc-8004.1763.1 -1.1 -2.7 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3079.1 -1.1 -5.4 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Xcc-8004.4976.1 -1.1 -5.0 hypothetical protein compare
Xcc-8004.3394.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.165.1 -1.1 -1.1 hypothetical protein compare
Xcc-8004.721.1 -1.1 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1196.1 -1.0 -4.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.207.1 -1.0 -2.8 hypothetical protein compare
Xcc-8004.1954.1 -1.0 -2.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3721.1 -1.0 -1.5 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.2081.1 -1.0 -2.3 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2928.1 -1.0 -2.3 FIG01210777: hypothetical protein compare
Xcc-8004.4732.1 -1.0 -1.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.623.1 -1.0 -2.0 Phosphoserine phosphatase compare
Xcc-8004.5280.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.5366.1 -1.0 -6.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.4814.1 -1.0 -2.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.3722.1 -1.0 -0.8 HrpB7 protein compare
Xcc-8004.1966.1 -1.0 -4.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5020.1 -1.0 -2.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.3320.1 -1.0 -0.9 FIG01209869: hypothetical protein compare
Xcc-8004.4507.1 -1.0 -2.8 Glycosyltransferase compare
Xcc-8004.269.1 -1.0 -2.2 FIG136845: Rhodanese-related sulfurtransferase compare
Xcc-8004.3863.1 -1.0 -3.3 Septum site-determining protein MinD compare
Xcc-8004.2372.1 -1.0 -4.3 Pheromone shutdown protein compare
Xcc-8004.1772.1 -1.0 -1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4529.1 -1.0 -1.1 FIG01210979: hypothetical protein compare
Xcc-8004.826.1 -1.0 -6.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.1236.1 -1.0 -3.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4237.1 -1.0 -2.2 hypothetical protein compare
Xcc-8004.3861.1 -1.0 -3.3 FIG01210504: hypothetical protein compare
Xcc-8004.1316.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.1917.1 -1.0 -4.3 Glutathione reductase (EC 1.8.1.7) compare
Xcc-8004.2961.1 -1.0 -1.0 PROBABLE HEMAGGLUTININ-RELATED PROTEIN compare
Xcc-8004.3663.1 -1.0 -1.5 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.248.1 -1.0 -2.5 Nitrogen regulatory protein P-II compare
Xcc-8004.1249.1 -0.9 -2.9 Transcriptional regulator compare
Xcc-8004.1016.1 -0.9 -3.1 Sucrose phosphorylase (EC 2.4.1.7) compare
Xcc-8004.2215.1 -0.9 -0.9 hypothetical protein compare
Xcc-8004.3612.1 -0.9 -1.0 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.2447.1 -0.9 -5.8 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.1680.1 -0.9 -3.2 FIG006611: nucleotidyltransferase compare
Xcc-8004.4049.1 -0.9 -2.6 Cell division trigger factor (EC 5.2.1.8) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta xylem experiments

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=4_days across organisms