Experiment set9IT094 for Ralstonia sp. UNC404CL21Col

Compare to:

Pimelic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14950 -6.4 -4.4 acetolactate synthase small subunit compare
ABZR87_RS02155 -5.9 -8.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS14540 -5.9 -5.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14500 -5.7 -12.8 tryptophan synthase subunit beta compare
ABZR87_RS02595 -5.6 -11.3 shikimate kinase compare
ABZR87_RS00200 -5.5 -5.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS16660 -5.5 -6.6 helix-turn-helix domain-containing protein compare
ABZR87_RS14505 -5.5 -6.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS02570 -5.5 -24.0 glutamate synthase-related protein compare
ABZR87_RS02565 -5.4 -6.4 glutamate synthase subunit beta compare
ABZR87_RS02640 -5.3 -17.6 diaminopimelate decarboxylase compare
ABZR87_RS09465 -5.2 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS21795 -5.1 -9.2 NUDIX domain-containing protein compare
ABZR87_RS02145 -5.1 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13790 -5.1 -9.2 chorismate synthase compare
ABZR87_RS05200 -5.1 -20.8 homoserine O-acetyltransferase compare
ABZR87_RS07360 -5.0 -16.1 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14530 -5.0 -9.5 3-isopropylmalate dehydrogenase compare
ABZR87_RS09445 -5.0 -12.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14535 -4.9 -8.2 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02160 -4.8 -7.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS01810 -4.7 -4.6 glutamate 5-kinase compare
ABZR87_RS20880 -4.7 -10.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS05100 -4.7 -7.8 RNA polymerase-binding protein DksA compare
ABZR87_RS09100 -4.6 -14.3 acyl-CoA dehydrogenase compare
ABZR87_RS16170 -4.6 -6.3 argininosuccinate lyase compare
ABZR87_RS14490 -4.6 -10.6 tryptophan synthase subunit alpha compare
ABZR87_RS07380 -4.6 -12.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS07675 -4.6 -10.2 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS13250 -4.6 -5.3 phosphoserine phosphatase SerB compare
ABZR87_RS02140 -4.6 -20.6 anthranilate synthase component I compare
ABZR87_RS12615 -4.5 -7.5 branched-chain amino acid ABC transporter permease compare
ABZR87_RS11440 -4.5 -9.5 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS00835 -4.4 -6.1 argininosuccinate synthase compare
ABZR87_RS09450 -4.4 -10.2 prephenate dehydratase compare
ABZR87_RS05305 -4.3 -15.0 TetR family transcriptional regulator compare
ABZR87_RS00210 -4.3 -11.5 nitrite/sulfite reductase compare
ABZR87_RS08630 -4.3 -10.3 dihydroorotase compare
ABZR87_RS00435 -4.2 -8.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13415 -4.2 -5.0 IclR family transcriptional regulator compare
ABZR87_RS02590 -4.2 -12.6 3-dehydroquinate synthase compare
ABZR87_RS06315 -4.2 -19.6 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS14955 -4.1 -6.3 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS22970 -4.1 -11.6 cystathionine gamma-synthase family protein compare
ABZR87_RS06770 -4.0 -8.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS09935 -4.0 -4.8 amino acid aminotransferase compare
ABZR87_RS04865 -4.0 -5.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS05170 -4.0 -5.4 acetylglutamate kinase compare
ABZR87_RS00285 -4.0 -3.8 acetylornithine transaminase compare
ABZR87_RS00205 -3.9 -4.4 DUF934 domain-containing protein compare
ABZR87_RS11625 -3.9 -12.8 malate synthase A compare
ABZR87_RS12605 -3.8 -7.1 ABC transporter ATP-binding protein compare
ABZR87_RS14115 -3.8 -5.1 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS00190 -3.7 -13.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00195 -3.7 -5.3 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS05590 -3.7 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS20875 -3.6 -8.4 LysR family transcriptional regulator compare
ABZR87_RS16960 -3.6 -4.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00185 -3.6 -4.9 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS04195 -3.6 -16.0 branched-chain amino acid ABC transporter permease compare
ABZR87_RS12800 -3.6 -8.2 trigger factor compare
ABZR87_RS12600 -3.5 -7.2 ABC transporter ATP-binding protein conserved
ABZR87_RS08625 -3.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS01615 -3.3 -3.7 RNB domain-containing ribonuclease compare
ABZR87_RS12620 -3.2 -18.5 branched-chain amino acid ABC transporter substrate-binding protein conserved
ABZR87_RS13475 -3.1 -9.0 PAS domain S-box protein compare
ABZR87_RS04210 -3.1 -10.5 ABC transporter ATP-binding protein compare
ABZR87_RS04215 -3.1 -4.7 ABC transporter ATP-binding protein compare
ABZR87_RS02655 -3.1 -11.6 anti-sigma factor compare
ABZR87_RS12610 -3.1 -10.0 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS07035 -3.0 -9.0 RNase adapter RapZ compare
ABZR87_RS12790 -3.0 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS08970 -3.0 -8.2 protein TolQ compare
ABZR87_RS07665 -3.0 -10.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS04200 -3.0 -7.9 branched-chain amino acid ABC transporter permease compare
ABZR87_RS17560 -2.9 -13.8 ABC transporter substrate-binding protein compare
ABZR87_RS20870 -2.9 -11.5 LysR family transcriptional regulator compare
ABZR87_RS01110 -2.9 -10.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS00220 -2.8 -10.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS19435 -2.8 -4.5 trehalose-phosphatase compare
ABZR87_RS08985 -2.6 -11.8 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS12785 -2.5 -3.0 endopeptidase La compare
ABZR87_RS16080 -2.5 -3.2 P-II family nitrogen regulator compare
ABZR87_RS08990 -2.5 -7.7 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS12625 -2.5 -9.4 3-(methylthio)propionyl-CoA ligase conserved
ABZR87_RS06350 -2.5 -3.3 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS17525 -2.4 -13.5 helix-turn-helix domain-containing protein compare
ABZR87_RS08695 -2.4 -9.7 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS12795 -2.4 -6.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS16125 -2.4 -7.3 heme biosynthesis protein HemY compare
ABZR87_RS04940 -2.4 -7.6 PAS domain-containing sensor histidine kinase compare
ABZR87_RS10565 -2.4 -5.5 cupin domain-containing protein compare
ABZR87_RS09625 -2.4 -12.5 CobD/CbiB family protein compare
ABZR87_RS11675 -2.3 -3.7 disulfide bond formation protein B compare
ABZR87_RS21815 -2.3 -1.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS10240 -2.3 -3.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS04975 -2.3 -3.6 peptide deformylase compare
ABZR87_RS06395 -2.3 -4.3 response regulator compare
ABZR87_RS01645 -2.2 -4.5 type II 3-dehydroquinate dehydratase compare
ABZR87_RS15440 -2.2 -4.6 ribonuclease G compare
ABZR87_RS08640 -2.1 -5.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS14965 -2.1 -4.4 DUF3619 family protein compare
ABZR87_RS09515 -2.0 -1.3 cysteine synthase CysM compare
ABZR87_RS17145 -2.0 -13.8 AMP nucleosidase compare
ABZR87_RS06745 -2.0 -6.4 S41 family peptidase compare
ABZR87_RS23095 -1.9 -2.2 MarR family transcriptional regulator compare
ABZR87_RS08980 -1.9 -3.5 cell envelope integrity protein TolA compare
ABZR87_RS04125 -1.9 -8.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS05350 -1.9 -7.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00875 -1.8 -4.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS06645 -1.8 -2.7 TlpA disulfide reductase family protein compare
ABZR87_RS02480 -1.8 -3.4 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS07635 -1.8 -3.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS17495 -1.8 -11.8 acyl-CoA synthetase compare
ABZR87_RS05130 -1.8 -1.8 CsbD family protein compare
ABZR87_RS07620 -1.8 -5.4 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS10085 -1.8 -1.9 Rne/Rng family ribonuclease compare
ABZR87_RS06495 -1.8 -2.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS13285 -1.7 -6.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01675 -1.7 -3.0 carbohydrate kinase family protein compare
ABZR87_RS17310 -1.6 -5.1 PadR family transcriptional regulator compare
ABZR87_RS00355 -1.6 -8.1 quinolinate synthase NadA compare
ABZR87_RS10310 -1.6 -4.7 FadR/GntR family transcriptional regulator compare
ABZR87_RS00360 -1.6 -2.6 acyl-CoA desaturase compare
ABZR87_RS10780 -1.6 -5.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS02380 -1.6 -10.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS07625 -1.6 -3.0 Holliday junction branch migration protein RuvA compare
ABZR87_RS16165 -1.6 -1.2 anti-sigma factor compare
ABZR87_RS12585 -1.5 -3.9 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS00215 -1.5 -4.3 sulfite exporter TauE/SafE family protein compare
ABZR87_RS11925 -1.5 -10.0 phosphoenolpyruvate synthase compare
ABZR87_RS16180 -1.5 -5.6 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS08700 -1.5 -5.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06400 -1.5 -8.4 response regulator transcription factor compare
ABZR87_RS02385 -1.5 -4.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS00350 -1.5 -5.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS04785 -1.5 -8.7 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS09085 -1.5 -7.0 DUF883 family protein compare
ABZR87_RS06845 -1.5 -9.0 heme o synthase compare
ABZR87_RS07700 -1.5 -2.4 peptidylprolyl isomerase compare
ABZR87_RS10170 -1.5 -4.4 RseA family anti-sigma factor compare
ABZR87_RS02035 -1.4 -6.2 substrate-binding domain-containing protein compare
ABZR87_RS22910 -1.4 -1.8 6-phosphogluconolactonase compare
ABZR87_RS09200 -1.4 -11.0 long-chain fatty acid--CoA ligase compare
ABZR87_RS09615 -1.4 -1.2 50S ribosomal protein L19 compare
ABZR87_RS21615 -1.4 -4.8 response regulator compare
ABZR87_RS16250 -1.3 -4.1 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS19470 -1.3 -9.0 UDP-glucose 4-epimerase GalE compare
ABZR87_RS20690 -1.3 -2.0 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS05145 -1.3 -2.0 copper chaperone PCu(A)C compare
ABZR87_RS13645 -1.3 -1.2 hypothetical protein compare
ABZR87_RS16185 -1.3 -2.1 dCTP deaminase compare
ABZR87_RS18165 -1.3 -2.4 hypothetical protein compare
ABZR87_RS02375 -1.3 -8.9 cytochrome c1 compare
ABZR87_RS01745 -1.3 -4.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS04945 -1.3 -1.6 DUF4390 domain-containing protein compare
ABZR87_RS01035 -1.3 -4.5 histidine utilization repressor compare
ABZR87_RS00580 -1.3 -3.2 hypothetical protein compare
ABZR87_RS07050 -1.2 -1.4 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS10175 -1.2 -5.0 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02020 -1.2 -8.2 long-chain fatty acid--CoA ligase compare
ABZR87_RS11125 -1.2 -5.2 cell division protein ZapE compare
ABZR87_RS15685 -1.2 -5.7 TIGR00730 family Rossman fold protein compare
ABZR87_RS09080 -1.2 -4.2 phage holin family protein compare
ABZR87_RS10785 -1.2 -5.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS05060 -1.2 -4.7 DUF484 family protein compare
ABZR87_RS19320 -1.2 -1.5 hypothetical protein compare
ABZR87_RS10610 -1.2 -1.8 inositol monophosphatase family protein compare
ABZR87_RS10620 -1.2 -2.1 serine O-acetyltransferase compare
ABZR87_RS11940 -1.2 -3.4 SsrA-binding protein SmpB compare
ABZR87_RS00385 -1.2 -1.5 response regulator transcription factor compare
ABZR87_RS04205 -1.2 -5.5 ABC transporter substrate-binding protein compare
ABZR87_RS01640 -1.2 -2.7 TlpA disulfide reductase family protein compare
ABZR87_RS06715 -1.1 -2.5 PTS sugar transporter subunit IIA compare
ABZR87_RS07705 -1.1 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS07645 -1.1 -2.9 Fis family transcriptional regulator compare
ABZR87_RS02680 -1.1 -7.6 c-type cytochrome compare
ABZR87_RS15810 -1.1 -3.1 hypothetical protein compare
ABZR87_RS03195 -1.1 -8.4 cation diffusion facilitator family transporter compare
ABZR87_RS07020 -1.1 -8.2 dynamin-like GTPase family protein compare
ABZR87_RS22405 -1.1 -1.5 hypothetical protein compare
ABZR87_RS01605 -1.0 -6.7 shikimate dehydrogenase compare
ABZR87_RS01780 -1.0 -1.8 MarC family protein compare
ABZR87_RS21810 -1.0 -2.9 enoyl-CoA hydratase compare
ABZR87_RS07355 -1.0 -6.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS19430 -1.0 -7.8 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
ABZR87_RS01760 -1.0 -1.2 PP0621 family protein compare
ABZR87_RS03015 -1.0 -6.1 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR87_RS21940 -1.0 -0.9 hypothetical protein compare
ABZR87_RS01980 -1.0 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS09460 -1.0 -4.0 prephenate dehydrogenase compare
ABZR87_RS02235 -1.0 -5.2 response regulator compare
ABZR87_RS18190 -1.0 -1.9 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS10570 -0.9 -5.3 peptidylprolyl isomerase compare
ABZR87_RS11245 -0.9 -4.4 translational GTPase TypA compare
ABZR87_RS16270 -0.9 -1.8 cold-shock protein compare
ABZR87_RS21375 -0.9 -2.2 DUF6566 family protein compare
ABZR87_RS16130 -0.9 -3.2 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS02440 -0.9 -5.8 twin-arginine translocase subunit TatC compare
ABZR87_RS20145 -0.9 -3.5 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Pimelic acid in Ralstonia sp. UNC404CL21Col

For carbon source Pimelic acid across organisms