Experiment set9IT093 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium adipate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02595 -5.7 -11.0 shikimate kinase compare
ABZR87_RS09465 -5.2 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02155 -5.2 -9.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS14530 -4.8 -10.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS02565 -4.7 -7.2 glutamate synthase subunit beta compare
ABZR87_RS14540 -4.7 -8.5 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02570 -4.7 -26.4 glutamate synthase-related protein compare
ABZR87_RS07360 -4.5 -17.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS05170 -4.5 -3.1 acetylglutamate kinase compare
ABZR87_RS12585 -4.4 -12.4 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS14950 -4.4 -6.2 acetolactate synthase small subunit compare
ABZR87_RS14505 -4.4 -7.7 phosphoribosylanthranilate isomerase compare
ABZR87_RS00285 -4.4 -3.0 acetylornithine transaminase compare
ABZR87_RS09445 -4.3 -15.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS00835 -4.3 -7.1 argininosuccinate synthase compare
ABZR87_RS16170 -4.3 -7.0 argininosuccinate lyase compare
ABZR87_RS14500 -4.2 -17.8 tryptophan synthase subunit beta compare
ABZR87_RS07380 -4.1 -15.8 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02640 -4.1 -18.0 diaminopimelate decarboxylase compare
ABZR87_RS14535 -4.0 -8.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS21795 -4.0 -7.9 NUDIX domain-containing protein compare
ABZR87_RS20865 -3.8 -7.0 acyl-CoA dehydrogenase family protein compare
ABZR87_RS02160 -3.8 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS20870 -3.8 -12.0 LysR family transcriptional regulator compare
ABZR87_RS06770 -3.8 -9.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS22970 -3.8 -13.1 cystathionine gamma-synthase family protein compare
ABZR87_RS02590 -3.8 -12.2 3-dehydroquinate synthase compare
ABZR87_RS00185 -3.7 -5.1 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS15790 -3.7 -7.3 3-oxoadipyl-CoA thiolase compare
ABZR87_RS14955 -3.7 -8.8 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS05200 -3.6 -19.7 homoserine O-acetyltransferase compare
ABZR87_RS13790 -3.6 -13.0 chorismate synthase compare
ABZR87_RS14490 -3.5 -12.7 tryptophan synthase subunit alpha compare
ABZR87_RS05305 -3.5 -14.0 TetR family transcriptional regulator compare
ABZR87_RS00210 -3.4 -11.5 nitrite/sulfite reductase compare
ABZR87_RS16660 -3.3 -6.5 helix-turn-helix domain-containing protein compare
ABZR87_RS05590 -3.3 -3.2 orotate phosphoribosyltransferase compare
ABZR87_RS14655 -3.3 -10.6 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS09935 -3.3 -5.8 amino acid aminotransferase compare
ABZR87_RS20875 -3.2 -8.2 LysR family transcriptional regulator compare
ABZR87_RS08625 -3.2 -3.1 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS09450 -3.2 -8.7 prephenate dehydratase compare
ABZR87_RS05100 -3.2 -7.5 RNA polymerase-binding protein DksA compare
ABZR87_RS12800 -3.2 -7.6 trigger factor compare
ABZR87_RS15440 -3.0 -3.6 ribonuclease G compare
ABZR87_RS16635 -3.0 -17.2 MFS family transporter conserved
ABZR87_RS00435 -3.0 -10.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS10240 -3.0 -3.4 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS02140 -2.9 -16.1 anthranilate synthase component I compare
ABZR87_RS06645 -2.9 -3.4 TlpA disulfide reductase family protein compare
ABZR87_RS02145 -2.9 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS20880 -2.9 -10.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS11440 -2.8 -7.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS10565 -2.8 -6.3 cupin domain-containing protein compare
ABZR87_RS04865 -2.7 -6.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS14115 -2.7 -4.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS16080 -2.6 -4.1 P-II family nitrogen regulator compare
ABZR87_RS02655 -2.6 -13.2 anti-sigma factor compare
ABZR87_RS07665 -2.6 -11.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS08630 -2.5 -9.2 dihydroorotase compare
ABZR87_RS01810 -2.4 -4.5 glutamate 5-kinase compare
ABZR87_RS12790 -2.4 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS12785 -2.4 -4.0 endopeptidase La compare
ABZR87_RS01615 -2.4 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS00360 -2.4 -3.1 acyl-CoA desaturase compare
ABZR87_RS13250 -2.4 -2.6 phosphoserine phosphatase SerB compare
ABZR87_RS02385 -2.3 -6.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS15800 -2.3 -8.2 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS02480 -2.2 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS17215 -2.2 -11.8 1,4-alpha-glucan branching protein GlgB compare
ABZR87_RS15795 -2.2 -8.1 CoA transferase subunit B compare
ABZR87_RS10085 -2.2 -2.6 Rne/Rng family ribonuclease compare
ABZR87_RS12795 -2.2 -5.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS02235 -2.2 -8.5 response regulator compare
ABZR87_RS14330 -2.2 -1.5 hypothetical protein compare
ABZR87_RS05350 -2.1 -7.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS13475 -2.1 -8.7 PAS domain S-box protein compare
ABZR87_RS21365 -2.1 -2.4 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS11925 -2.0 -12.6 phosphoenolpyruvate synthase compare
ABZR87_RS16960 -2.0 -5.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS11940 -2.0 -4.8 SsrA-binding protein SmpB compare
ABZR87_RS04945 -2.0 -3.4 DUF4390 domain-containing protein compare
ABZR87_RS01645 -1.9 -4.4 type II 3-dehydroquinate dehydratase compare
ABZR87_RS06845 -1.9 -9.4 heme o synthase compare
ABZR87_RS15810 -1.9 -5.8 hypothetical protein compare
ABZR87_RS07635 -1.9 -3.3 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS00205 -1.9 -2.8 DUF934 domain-containing protein compare
ABZR87_RS00220 -1.9 -7.7 CysB family HTH-type transcriptional regulator compare
ABZR87_RS06395 -1.8 -4.2 response regulator compare
ABZR87_RS04125 -1.8 -8.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS16250 -1.8 -5.1 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS02225 -1.8 -10.0 ATP-binding protein compare
ABZR87_RS13175 -1.8 -2.1 tRNA-Leu compare
ABZR87_RS02380 -1.8 -11.3 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS06405 -1.7 -1.7 hypothetical protein compare
ABZR87_RS08695 -1.7 -8.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS16185 -1.7 -2.6 dCTP deaminase compare
ABZR87_RS09515 -1.6 -1.4 cysteine synthase CysM compare
ABZR87_RS00875 -1.6 -4.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS08970 -1.6 -7.1 protein TolQ compare
ABZR87_RS14965 -1.5 -3.5 DUF3619 family protein compare
ABZR87_RS02375 -1.5 -8.3 cytochrome c1 compare
ABZR87_RS16180 -1.5 -5.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS10930 -1.5 -2.2 outer membrane protein assembly factor BamB compare
ABZR87_RS02440 -1.5 -8.0 twin-arginine translocase subunit TatC compare
ABZR87_RS09615 -1.4 -1.3 50S ribosomal protein L19 compare
ABZR87_RS13415 -1.4 -7.2 IclR family transcriptional regulator compare
ABZR87_RS02680 -1.4 -9.4 c-type cytochrome compare
ABZR87_RS12615 -1.4 -4.0 branched-chain amino acid ABC transporter permease compare
ABZR87_RS08980 -1.4 -3.5 cell envelope integrity protein TolA compare
ABZR87_RS06810 -1.4 -5.6 cytochrome c oxidase assembly protein compare
ABZR87_RS08700 -1.4 -5.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS00195 -1.4 -4.6 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS17310 -1.3 -4.3 PadR family transcriptional regulator compare
ABZR87_RS07035 -1.3 -7.0 RNase adapter RapZ compare
ABZR87_RS10310 -1.3 -3.5 FadR/GntR family transcriptional regulator compare
ABZR87_RS06745 -1.3 -5.2 S41 family peptidase compare
ABZR87_RS20450 -1.3 -1.2 HAD family phosphatase compare
ABZR87_RS00200 -1.3 -4.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS14665 -1.2 -1.9 histidine phosphatase family protein compare
ABZR87_RS11675 -1.2 -2.6 disulfide bond formation protein B compare
ABZR87_RS09700 -1.2 -3.2 DEAD/DEAH box helicase compare
ABZR87_RS13285 -1.2 -6.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS00190 -1.2 -7.0 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS11125 -1.2 -4.7 cell division protein ZapE compare
ABZR87_RS21285 -1.2 -2.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS04215 -1.1 -4.2 ABC transporter ATP-binding protein compare
ABZR87_RS06800 -1.1 -9.4 cytochrome c oxidase subunit I compare
ABZR87_RS07700 -1.1 -2.0 peptidylprolyl isomerase compare
ABZR87_RS01980 -1.1 -1.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS01035 -1.1 -5.1 histidine utilization repressor compare
ABZR87_RS06795 -1.1 -7.0 cytochrome c oxidase subunit II compare
ABZR87_RS23360 -1.1 -1.9 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS15685 -1.1 -5.2 TIGR00730 family Rossman fold protein compare
ABZR87_RS10120 -1.1 -1.9 YceD family protein compare
ABZR87_RS08655 -1.1 -3.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS00440 -1.0 -6.2 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS07675 -1.0 -6.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS17340 -1.0 -2.3 MarR family transcriptional regulator compare
ABZR87_RS19470 -1.0 -7.1 UDP-glucose 4-epimerase GalE compare
ABZR87_RS10400 -1.0 -3.4 hypothetical protein compare
ABZR87_RS13315 -1.0 -6.0 RluA family pseudouridine synthase compare
ABZR87_RS12600 -1.0 -4.0 ABC transporter ATP-binding protein compare
ABZR87_RS17145 -1.0 -7.6 AMP nucleosidase compare
ABZR87_RS02575 -1.0 -4.2 transposase compare
ABZR87_RS14970 -1.0 -2.9 DUF3106 domain-containing protein compare
ABZR87_RS06715 -1.0 -1.9 PTS sugar transporter subunit IIA compare
ABZR87_RS07620 -1.0 -3.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS02230 -1.0 -4.6 response regulator compare
ABZR87_RS10955 -1.0 -4.8 protease modulator HflC compare
ABZR87_RS15505 -1.0 -1.1 DNA polymerase III subunit alpha compare
ABZR87_RS02035 -1.0 -5.4 substrate-binding domain-containing protein compare
ABZR87_RS00820 -1.0 -1.7 YajQ family cyclic di-GMP-binding protein compare
ABZR87_RS04975 -1.0 -2.3 peptide deformylase compare
ABZR87_RS23570 -1.0 -7.3 PAS domain-containing protein compare
ABZR87_RS10950 -1.0 -6.1 FtsH protease activity modulator HflK compare
ABZR87_RS08990 -1.0 -4.4 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS05060 -0.9 -3.1 DUF484 family protein compare
ABZR87_RS17650 -0.9 -5.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16125 -0.9 -3.6 heme biosynthesis protein HemY compare
ABZR87_RS05015 -0.9 -4.0 penicillin-binding protein 2 compare
ABZR87_RS10785 -0.9 -4.3 exodeoxyribonuclease V subunit beta compare
ABZR87_RS03195 -0.9 -7.4 cation diffusion facilitator family transporter compare
ABZR87_RS10570 -0.9 -4.5 peptidylprolyl isomerase compare
ABZR87_RS20730 -0.9 -1.5 hypothetical protein compare
ABZR87_RS08985 -0.9 -6.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS06840 -0.9 -4.7 COX15/CtaA family protein compare
ABZR87_RS01110 -0.9 -4.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS01780 -0.9 -1.5 MarC family protein compare
ABZR87_RS00215 -0.9 -3.6 sulfite exporter TauE/SafE family protein compare
ABZR87_RS08235 -0.9 -1.1 hypothetical protein compare
ABZR87_RS23580 -0.9 -3.3 integrase compare
ABZR87_RS03865 -0.9 -6.1 GntR family transcriptional regulator compare
ABZR87_RS11435 -0.9 -3.1 Mth938-like domain-containing protein compare
ABZR87_RS18695 -0.9 -5.2 sugar-binding transcriptional regulator compare
ABZR87_RS06350 -0.9 -2.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS10780 -0.9 -2.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS19435 -0.8 -1.9 trehalose-phosphatase compare
ABZR87_RS20650 -0.8 -1.7 aspartate dehydrogenase compare
ABZR87_RS05470 -0.8 -1.9 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS23180 -0.8 -1.6 ABC transporter ATP-binding protein compare
ABZR87_RS12665 -0.8 -1.4 ABC transporter ATP-binding protein compare
ABZR87_RS17315 -0.8 -2.6 MarR family transcriptional regulator compare
ABZR87_RS18440 -0.8 -2.6 VOC family protein compare
ABZR87_RS00580 -0.8 -2.7 hypothetical protein compare
ABZR87_RS02020 -0.8 -5.8 long-chain fatty acid--CoA ligase compare
ABZR87_RS06495 -0.8 -1.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS01745 -0.8 -1.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS09035 -0.8 -4.5 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS06820 -0.8 -5.4 cytochrome c oxidase subunit 3 compare
ABZR87_RS04640 -0.8 -1.5 hypothetical protein compare
ABZR87_RS12575 -0.8 -2.8 acetyl-CoA C-acyltransferase compare
ABZR87_RS12605 -0.8 -3.0 ABC transporter ATP-binding protein compare
ABZR87_RS11195 -0.8 -5.0 pseudouridine synthase compare
ABZR87_RS10610 -0.8 -0.9 inositol monophosphatase family protein compare
ABZR87_RS22920 -0.7 -2.4 phosphogluconate dehydratase compare
ABZR87_RS09710 -0.7 -2.2 tRNA-Arg compare
ABZR87_RS08670 -0.7 -4.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS22690 -0.7 -2.1 XRE family transcriptional regulator compare
ABZR87_RS12620 -0.7 -5.6 branched-chain amino acid ABC transporter substrate-binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium adipate in Ralstonia sp. UNC404CL21Col

For carbon source Sodium adipate across organisms