Experiment set9IT092 for Herbaspirillum seropedicae SmR1

Compare to:

Taped volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
HSERO_RS02330 -8.6 -5.6 aspartate carbamoyltransferase compare
HSERO_RS17110 -6.8 -2.8 ribonuclease H compare
HSERO_RS11465 -5.8 -2.3 sodium:proton antiporter compare
HSERO_RS02260 -5.7 -4.6 DNA polymerase I compare
HSERO_RS04325 -5.7 -7.8 helicase I compare
HSERO_RS08115 -5.6 -1.3 acyl-CoA-binding protein compare
HSERO_RS21375 -5.3 -2.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS02145 -5.1 -1.2 ferritin compare
HSERO_RS19805 -5.1 -5.3 glycosyl transferase compare
HSERO_RS04330 -4.1 -6.6 ATP-dependent exonuclease compare
HSERO_RS03085 -4.0 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS16075 -3.6 -1.8 coproporphyrinogen III oxidase compare
HSERO_RS01870 -3.4 -4.3 ABC transporter permease compare
HSERO_RS15665 -3.4 -0.8 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS15070 -3.3 -0.8 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS05970 -3.3 -1.3 ABC transporter compare
HSERO_RS10395 -3.3 -1.5 phosphate transport regulator compare
HSERO_RS15630 -3.3 -0.7 exodeoxyribonuclease III compare
HSERO_RS09735 -3.2 -4.0 hypothetical protein compare
HSERO_RS02340 -3.2 -14.1 dihydroorotase compare
HSERO_RS13285 -3.1 -1.7 precorrin-2 C20-methyltransferase compare
HSERO_RS08075 -3.0 -1.2 ferredoxin compare
HSERO_RS03450 -3.0 -1.4 energy transducer protein TonB compare
HSERO_RS02365 -3.0 -3.7 hypothetical protein compare
HSERO_RS02160 -2.9 -1.9 DNA-dependent helicase compare
HSERO_RS17105 -2.9 -1.6 DNA polymerase III subunit epsilon compare
HSERO_RS06245 -2.9 -8.5 catalase-peroxidase compare
HSERO_RS19995 -2.9 -0.7 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS23655 -2.8 -1.1 phosphonate ABC transporter permease compare
HSERO_RS10405 -2.8 -1.9 phosphate starvation protein PhoH compare
HSERO_RS10805 -2.8 -1.8 succinyldiaminopimelate aminotransferase compare
HSERO_RS05515 -2.7 -0.6 glucose-6-phosphate isomerase compare
HSERO_RS13960 -2.7 -2.9 hypothetical protein compare
HSERO_RS09725 -2.7 -6.4 ABC transporter compare
HSERO_RS13965 -2.7 -1.6 single-stranded DNA exonuclease compare
HSERO_RS08795 -2.7 -1.7 transcriptional regulator compare
HSERO_RS20235 -2.7 -0.8 cytochrome C compare
HSERO_RS03595 -2.6 -2.7 cation transporter compare
HSERO_RS10815 -2.6 -3.5 chromosome segregation protein SMC compare
HSERO_RS09730 -2.6 -2.4 glycoside hydrolase family 43 compare
HSERO_RS18010 -2.5 -0.8 pseudouridine synthase compare
HSERO_RS03270 -2.5 -4.2 protein RecA compare
HSERO_RS02090 -2.4 -1.0 Holliday junction DNA helicase RuvA compare
HSERO_RS06165 -2.4 -5.4 ATP-dependent DNA helicase RecG compare
HSERO_RS13260 -2.4 -3.2 cobinamide adenolsyltransferase compare
HSERO_RS07970 -2.3 -1.5 formyltetrahydrofolate deformylase compare
HSERO_RS00435 -2.3 -3.7 glutathione synthetase compare
HSERO_RS23185 -2.3 -0.5 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS12300 -2.3 -2.6 hypothetical protein compare
HSERO_RS21345 -2.3 -2.3 cell division inhibitor MinD compare
HSERO_RS14855 -2.2 -7.4 helicase compare
HSERO_RS18425 -2.2 -2.5 prephenate dehydrogenase compare
HSERO_RS15655 -2.2 -1.3 methylcitrate synthase compare
HSERO_RS09455 -2.2 -3.2 NAD synthetase compare
HSERO_RS07755 -2.1 -2.9 glutamate racemase compare
HSERO_RS13315 -2.1 -0.9 ferredoxin compare
HSERO_RS15365 -2.0 -2.1 MarR family transcriptional regulator compare
HSERO_RS22175 -2.0 -0.9 hypothetical protein compare
HSERO_RS16370 -2.0 -1.1 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS21340 -2.0 -2.8 septum formation inhibitor protein compare
HSERO_RS21540 -2.0 -1.7 alkyl hydroperoxide reductase subunit C compare
HSERO_RS09720 -2.0 -1.6 membrane protein compare
HSERO_RS11065 -1.9 -2.5 quinolinate synthetase compare
HSERO_RS18935 -1.9 -3.6 LysR family transcriptional regulator compare
HSERO_RS17980 -1.9 -1.1 GTP-binding protein compare
HSERO_RS21370 -1.9 -1.2 dihydrolipoamide acyltransferase compare
HSERO_RS23945 -1.9 -1.5 cobyric acid synthase CobQ compare
HSERO_RS15435 -1.9 -2.5 enoyl-CoA hydratase compare
HSERO_RS11595 -1.9 -1.1 ArsR family transcriptional regulator compare
HSERO_RS02775 -1.9 -1.0 hypothetical protein compare
HSERO_RS13305 -1.9 -3.8 magnesium chelatase compare
HSERO_RS18675 -1.8 -1.4 hypothetical protein compare
HSERO_RS12975 -1.8 -1.3 phytoene synthase compare
HSERO_RS19835 -1.8 -3.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS01305 -1.7 -3.3 acetate kinase compare
HSERO_RS13275 -1.7 -1.2 cobalamin biosynthesis protein CbiG compare
HSERO_RS04340 -1.7 -4.3 gamma-glutamyl ligase compare
HSERO_RS08640 -1.7 -1.1 hypothetical protein compare
HSERO_RS18875 -1.7 -0.9 ATPase compare
HSERO_RS10850 -1.7 -2.0 ABC transporter compare
HSERO_RS13270 -1.7 -4.5 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS12920 -1.6 -0.7 trigger factor compare
HSERO_RS06940 -1.6 -1.5 23S rRNA methyltransferase compare
HSERO_RS08605 -1.6 -1.2 Hsp33 chaperonin compare
HSERO_RS11155 -1.6 -4.2 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS10400 -1.6 -4.6 inorganic phosphate transporter compare
HSERO_RS19630 -1.6 -0.3 AMP nucleosidase compare
HSERO_RS13560 -1.6 -2.6 transcriptional regulator compare
HSERO_RS07025 -1.6 -2.1 ATP-dependent Clp protease ClpS compare
HSERO_RS01815 -1.6 -4.5 gamma-glutamyl kinase compare
HSERO_RS01835 -1.6 -1.3 hypothetical protein compare
HSERO_RS17530 -1.5 -2.8 RpiR family transcriptional regulator compare
HSERO_RS09145 -1.5 -3.5 DNA topoisomerase IV subunit A compare
HSERO_RS08790 -1.5 -0.7 hypothetical protein compare
HSERO_RS13255 -1.5 -2.0 cobyrinic acid a,c-diamide synthase compare
HSERO_RS03780 -1.5 -3.0 type VI secretion protein compare
HSERO_RS21640 -1.5 -1.3 recombinase RdgC compare
HSERO_RS16150 -1.5 -3.3 arginyl-tRNA-protein transferase compare
HSERO_RS22285 -1.5 -1.2 GntR family transcriptional regulator compare
HSERO_RS09940 -1.5 -1.9 peptidylprolyl isomerase compare
HSERO_RS08555 -1.4 -1.6 agmatinase compare
HSERO_RS14025 -1.4 -1.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS03510 -1.4 -2.5 proline aminopeptidase P II compare
HSERO_RS00450 -1.4 -2.1 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS18360 -1.4 -2.0 hypothetical protein compare
HSERO_RS21100 -1.4 -5.1 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS06655 -1.4 -0.7 hypothetical protein compare
HSERO_RS01720 -1.4 -1.4 membrane protein compare
HSERO_RS01785 -1.4 -2.0 hypothetical protein compare
HSERO_RS13675 -1.4 -1.5 histidine kinase compare
HSERO_RS13515 -1.4 -1.9 XRE family transcriptional regulator compare
HSERO_RS22710 -1.4 -2.0 hypothetical protein compare
HSERO_RS13880 -1.4 -0.7 hypothetical protein compare
HSERO_RS04135 -1.4 -1.4 amidohydrolase compare
HSERO_RS18105 -1.4 -1.2 hypothetical protein compare
HSERO_RS06145 -1.4 -0.8 NrdR family transcriptional regulator compare
HSERO_RS05850 -1.4 -4.7 exodeoxyribonuclease VII large subunit compare
HSERO_RS10340 -1.4 -2.2 flagellar biosynthesis protein FliS compare
HSERO_RS16485 -1.4 -2.4 tRNA pseudouridine synthase A compare
HSERO_RS01315 -1.4 -0.9 transcriptional regulator compare
HSERO_RS02325 -1.4 -3.6 uracil phosphoribosyltransferase compare
HSERO_RS06650 -1.4 -0.8 MarR family transcriptional regulator compare
HSERO_RS00080 -1.3 -4.3 histidine kinase compare
HSERO_RS16070 -1.3 -1.0 cytochrome biogenesis protein compare
HSERO_RS09650 -1.3 -1.2 elongation factor 4 compare
HSERO_RS21535 -1.3 -4.6 NADH dehydrogenase compare
HSERO_RS11345 -1.3 -1.2 hypothetical protein compare
HSERO_RS19785 -1.3 -1.8 sensor histidine kinase compare
HSERO_RS06745 -1.3 -0.9 hypothetical protein compare
HSERO_RS20310 -1.3 -1.8 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS07300 -1.3 -1.6 glutamate--cysteine ligase compare
HSERO_RS07470 -1.3 -0.9 ketosteroid isomerase compare
HSERO_RS01095 -1.2 -1.3 hypothetical protein compare
HSERO_RS10910 -1.2 -5.3 peptidase compare
HSERO_RS23640 -1.2 -2.3 Ni/Fe hydrogenase compare
HSERO_RS18990 -1.2 -2.5 pyrroline-5-carboxylate reductase compare
HSERO_RS02445 -1.2 -2.2 proteinase inhibitor compare
HSERO_RS18355 -1.2 -3.0 recombinase RecR compare
HSERO_RS15315 -1.2 -1.8 transcriptional regulator compare
HSERO_RS11460 -1.2 -1.0 universal stress protein compare
HSERO_RS10120 -1.2 -1.5 chemotaxis protein CheD compare
HSERO_RS09155 -1.2 -3.1 DNA topoisomerase IV subunit B compare
HSERO_RS12740 -1.2 -1.6 histone acetyltransferase HPA2, GnaT family, acetyltransferase compare
HSERO_RS06175 -1.2 -2.6 queuine tRNA-ribosyltransferase compare
HSERO_RS06370 -1.2 -1.9 aromatic compound catabolic protein compare
HSERO_RS11070 -1.2 -2.8 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS13055 -1.2 -1.6 energy transducer TonB compare
HSERO_RS00765 -1.1 -1.9 cytochrome C compare
HSERO_RS03285 -1.1 -0.9 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS09405 -1.1 -2.0 molybdenum cofactor biosynthesis protein MoeA compare
HSERO_RS01320 -1.1 -1.8 RND transporter MFP subunit compare
HSERO_RS14375 -1.1 -1.4 IscN protein compare
HSERO_RS21760 -1.1 -2.2 DSBA oxidoreductase compare
HSERO_RS07625 -1.1 -1.0 tryptophanyl-tRNA synthetase compare
HSERO_RS01325 -1.1 -1.9 cation/multidrug efflux protein compare
HSERO_RS04630 -1.1 -2.2 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS09160 -1.1 -1.8 amidase compare
HSERO_RS02765 -1.1 -0.8 general stress protein compare
HSERO_RS04665 -1.1 -1.4 nitrile hydratase compare
HSERO_RS23920 -1.1 -2.6 phosphohydrolase compare
HSERO_RS11880 -1.1 -1.1 hypothetical protein compare
HSERO_RS09050 -1.1 -1.1 2-aminoadipate aminotransferase compare
HSERO_RS13265 -1.1 -1.5 G3E family GTPase compare
HSERO_RS00200 -1.1 -2.8 LysR family transcriptional regulator compare
HSERO_RS07280 -1.1 -2.6 hypothetical protein compare
HSERO_RS10315 -1.1 -1.9 flagellar hook-basal body protein FliE compare
HSERO_RS09660 -1.1 -1.3 ribonuclease III compare
HSERO_RS09780 -1.1 -1.1 phosphoglycerate mutase compare
HSERO_RS20345 -1.1 -2.3 histidinol dehydrogenase compare
HSERO_RS05125 -1.1 -1.5 DeoR family transcripitonal regulator compare
HSERO_RS20080 -1.1 -1.1 hypothetical protein compare
HSERO_RS13320 -1.0 -1.8 membrane protein compare
HSERO_RS08660 -1.0 -2.5 ketol-acid reductoisomerase compare
HSERO_RS02235 -1.0 -1.6 membrane protein compare
HSERO_RS08335 -1.0 -2.0 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS08285 -1.0 -1.6 amino acid ABC transporter ATP-binding protein compare
HSERO_RS14185 -1.0 -0.8 FeS cluster assembly scaffold IscU compare
HSERO_RS04165 -1.0 -0.6 hypothetical protein compare
HSERO_RS07710 -1.0 -1.0 hypothetical protein compare
HSERO_RS05540 -1.0 -0.8 cytochrome C' compare
HSERO_RS15570 -1.0 -2.8 sulfate adenylyltransferase compare
HSERO_RS16040 -1.0 -1.5 cytochrome CBB3 compare
HSERO_RS08430 -1.0 -1.7 diguanylate cyclase compare
HSERO_RS10665 -1.0 -2.4 coproporphyrinogen III oxidase compare
HSERO_RS06170 -1.0 -1.0 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS04500 -1.0 -2.6 oxidoreductase compare
HSERO_RS23445 -1.0 -1.4 2-hydroxychromene-2-carboxylate isomerase compare
HSERO_RS14610 -1.0 -3.1 hypothetical protein compare
HSERO_RS02315 -1.0 -2.0 transcriptional regulator compare
HSERO_RS17095 -1.0 -0.6 antitoxin compare
HSERO_RS09270 -1.0 -1.3 hypothetical protein compare
HSERO_RS11855 -1.0 -0.7 hypothetical protein compare
HSERO_RS07600 -1.0 -1.3 threonine-phosphate decarboxylase compare
HSERO_RS11615 -1.0 -4.0 hypothetical protein compare
HSERO_RS02780 -1.0 -0.8 hypothetical protein compare
HSERO_RS16835 -1.0 -2.4 phosphatidylglycerophosphatase compare
HSERO_RS16105 -0.9 -1.6 histidine kinase compare
HSERO_RS01120 -0.9 -2.1 hypothetical protein compare
HSERO_RS23440 -0.9 -1.8 isovaleryl-CoA dehydrogenase compare
HSERO_RS07635 -0.9 -2.2 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in agar plate interaction control experiments