Experiment set9IT092 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -6.2 -4.3 phosphoserine phosphatase SerB compare
ABZR87_RS14535 -5.8 -6.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02565 -5.7 -5.6 glutamate synthase subunit beta compare
ABZR87_RS14950 -5.5 -5.3 acetolactate synthase small subunit compare
ABZR87_RS02155 -5.3 -9.5 anthranilate phosphoribosyltransferase compare
ABZR87_RS06625 -5.2 -16.8 dicarboxylate/amino acid:cation symporter conserved
ABZR87_RS20875 -4.9 -9.3 LysR family transcriptional regulator compare
ABZR87_RS13790 -4.8 -10.2 chorismate synthase compare
ABZR87_RS07360 -4.8 -16.1 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14540 -4.8 -7.9 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02640 -4.7 -16.3 diaminopimelate decarboxylase compare
ABZR87_RS02570 -4.7 -26.0 glutamate synthase-related protein compare
ABZR87_RS14490 -4.6 -11.1 tryptophan synthase subunit alpha compare
ABZR87_RS14500 -4.6 -15.9 tryptophan synthase subunit beta compare
ABZR87_RS09465 -4.5 -8.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS11440 -4.5 -9.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09450 -4.5 -9.2 prephenate dehydratase compare
ABZR87_RS07060 -4.4 -18.6 RNA polymerase factor sigma-54 compare
ABZR87_RS14505 -4.4 -6.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS05200 -4.4 -19.5 homoserine O-acetyltransferase compare
ABZR87_RS02595 -4.4 -13.7 shikimate kinase compare
ABZR87_RS20880 -4.3 -11.0 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS16170 -4.3 -6.5 argininosuccinate lyase compare
ABZR87_RS14530 -4.3 -12.1 3-isopropylmalate dehydrogenase compare
ABZR87_RS09445 -4.3 -14.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS00200 -4.2 -5.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS09710 -4.1 -5.5 tRNA-Arg compare
ABZR87_RS01110 -4.1 -11.5 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS06770 -4.1 -9.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS05100 -4.1 -7.2 RNA polymerase-binding protein DksA compare
ABZR87_RS02160 -4.0 -6.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS07380 -4.0 -15.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS01810 -4.0 -4.7 glutamate 5-kinase compare
ABZR87_RS05170 -4.0 -4.7 acetylglutamate kinase compare
ABZR87_RS02590 -3.9 -11.2 3-dehydroquinate synthase compare
ABZR87_RS14955 -3.9 -7.8 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00190 -3.8 -13.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS08630 -3.8 -8.4 dihydroorotase compare
ABZR87_RS00835 -3.8 -8.1 argininosuccinate synthase compare
ABZR87_RS02145 -3.8 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS11125 -3.8 -5.7 cell division protein ZapE compare
ABZR87_RS02140 -3.7 -18.3 anthranilate synthase component I compare
ABZR87_RS11760 -3.6 -1.4 membrane protein compare
ABZR87_RS09935 -3.6 -6.3 amino acid aminotransferase compare
ABZR87_RS04865 -3.6 -5.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS22970 -3.6 -12.1 cystathionine gamma-synthase family protein compare
ABZR87_RS08625 -3.4 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00195 -3.4 -5.8 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS00285 -3.3 -4.2 acetylornithine transaminase compare
ABZR87_RS06635 -3.3 -7.0 sigma-54 dependent transcriptional regulator conserved
ABZR87_RS01565 -3.3 -12.3 NADP-dependent malic enzyme compare
ABZR87_RS00325 -3.2 -3.1 peptidylprolyl isomerase compare
ABZR87_RS01645 -3.1 -7.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01675 -2.8 -2.7 carbohydrate kinase family protein compare
ABZR87_RS00210 -2.8 -9.9 nitrite/sulfite reductase compare
ABZR87_RS10240 -2.7 -3.5 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS08660 -2.7 -7.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS00205 -2.5 -5.5 DUF934 domain-containing protein compare
ABZR87_RS00220 -2.5 -8.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS11010 -2.5 -3.4 oxidative damage protection protein compare
ABZR87_RS12785 -2.4 -4.4 endopeptidase La compare
ABZR87_RS00185 -2.3 -4.8 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS10820 -2.2 -7.9 LysR substrate-binding domain-containing protein compare
ABZR87_RS12795 -2.2 -6.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00435 -2.2 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14380 -2.1 -7.3 glutamate racemase compare
ABZR87_RS07705 -2.0 -4.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS06845 -2.0 -8.7 heme o synthase compare
ABZR87_RS16185 -2.0 -3.0 dCTP deaminase compare
ABZR87_RS15405 -1.9 -3.4 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS16125 -1.9 -5.8 heme biosynthesis protein HemY compare
ABZR87_RS05590 -1.9 -3.3 orotate phosphoribosyltransferase compare
ABZR87_RS14115 -1.9 -3.6 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS10780 -1.9 -5.9 PD-(D/E)XK nuclease family protein compare
ABZR87_RS06645 -1.9 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS02325 -1.8 -5.1 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS08655 -1.8 -5.1 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS02575 -1.8 -6.2 transposase compare
ABZR87_RS12790 -1.8 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS07700 -1.7 -2.4 peptidylprolyl isomerase compare
ABZR87_RS00355 -1.7 -7.9 quinolinate synthase NadA compare
ABZR87_RS06395 -1.7 -4.3 response regulator compare
ABZR87_RS06495 -1.7 -2.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS01605 -1.6 -7.3 shikimate dehydrogenase compare
ABZR87_RS23095 -1.6 -1.7 MarR family transcriptional regulator compare
ABZR87_RS00350 -1.6 -5.4 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS07620 -1.5 -3.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS16250 -1.5 -4.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS16180 -1.5 -4.6 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS14375 -1.5 -3.3 fumarate hydratase compare
ABZR87_RS00345 -1.5 -10.5 L-aspartate oxidase compare
ABZR87_RS10195 -1.5 -2.1 signal peptidase I compare
ABZR87_RS02480 -1.5 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS07730 -1.5 -1.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS06630 -1.4 -7.9 sensor histidine kinase conserved
ABZR87_RS08645 -1.4 -0.9 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS14665 -1.4 -1.8 histidine phosphatase family protein compare
ABZR87_RS14890 -1.4 -1.3 preprotein translocase subunit SecG compare
ABZR87_RS10565 -1.4 -4.5 cupin domain-containing protein compare
ABZR87_RS10620 -1.4 -2.4 serine O-acetyltransferase compare
ABZR87_RS08695 -1.4 -7.7 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00875 -1.4 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS06705 -1.4 -8.7 glutamate--cysteine ligase compare
ABZR87_RS08665 -1.3 -6.1 GNAT family N-acetyltransferase compare
ABZR87_RS09820 -1.3 -3.1 RidA family protein compare
ABZR87_RS10610 -1.3 -2.1 inositol monophosphatase family protein compare
ABZR87_RS08700 -1.3 -4.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS21735 -1.3 -1.5 DUF2917 domain-containing protein compare
ABZR87_RS11815 -1.3 -7.7 [protein-PII] uridylyltransferase compare
ABZR87_RS14495 -1.3 -2.4 site-specific DNA-methyltransferase compare
ABZR87_RS00215 -1.3 -3.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10785 -1.3 -5.1 exodeoxyribonuclease V subunit beta compare
ABZR87_RS04995 -1.2 -2.5 DNA topoisomerase III compare
ABZR87_RS11015 -1.2 -4.7 amino-acid N-acetyltransferase compare
ABZR87_RS05580 -1.2 -2.0 diaminopimelate epimerase compare
ABZR87_RS15480 -1.2 -8.6 glycosyltransferase family 25 protein compare
ABZR87_RS08680 -1.2 -5.9 glycosyltransferase compare
ABZR87_RS04945 -1.2 -2.3 DUF4390 domain-containing protein compare
ABZR87_RS05305 -1.2 -6.6 TetR family transcriptional regulator compare
ABZR87_RS06745 -1.2 -4.9 S41 family peptidase compare
ABZR87_RS20785 -1.2 -0.9 DUF2783 domain-containing protein compare
ABZR87_RS20145 -1.2 -3.4 hypothetical protein compare
ABZR87_RS09625 -1.2 -7.3 CobD/CbiB family protein compare
ABZR87_RS07385 -1.2 -2.3 HIT family protein compare
ABZR87_RS11065 -1.1 -4.3 nitrogen regulation protein NR(II) compare
ABZR87_RS04295 -1.1 -3.0 HU family DNA-binding protein compare
ABZR87_RS05130 -1.1 -1.1 CsbD family protein compare
ABZR87_RS09975 -1.1 -3.6 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS07635 -1.1 -2.2 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08710 -1.1 -7.9 sugar transferase compare
ABZR87_RS12775 -1.1 -2.8 tRNA-Val compare
ABZR87_RS04640 -1.1 -1.8 hypothetical protein compare
ABZR87_RS15500 -1.1 -5.2 glycosyltransferase compare
ABZR87_RS12345 -1.1 -1.0 dethiobiotin synthase compare
ABZR87_RS20665 -1.1 -3.9 IclR family transcriptional regulator compare
ABZR87_RS01885 -1.1 -4.5 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS12965 -1.1 -2.8 tail protein X compare
ABZR87_RS18560 -1.1 -1.3 NmrA family NAD(P)-binding protein compare
ABZR87_RS04940 -1.1 -4.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS01285 -1.0 -1.3 preprotein translocase subunit YajC compare
ABZR87_RS15705 -1.0 -2.9 UvrD-helicase domain-containing protein compare
ABZR87_RS17115 -1.0 -2.4 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS08690 -1.0 -8.4 polysaccharide biosynthesis protein compare
ABZR87_RS04975 -1.0 -2.0 peptide deformylase compare
ABZR87_RS02150 -1.0 -1.5 lysozyme inhibitor LprI family protein compare
ABZR87_RS11070 -1.0 -4.8 nitrogen regulation protein NR(I) compare
ABZR87_RS14680 -1.0 -1.5 SDR family oxidoreductase compare
ABZR87_RS08730 -1.0 -8.8 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR87_RS08715 -1.0 -8.3 ATP-grasp domain-containing protein compare
ABZR87_RS07625 -1.0 -2.3 Holliday junction branch migration protein RuvA compare
ABZR87_RS16080 -1.0 -1.3 P-II family nitrogen regulator compare
ABZR87_RS08705 -1.0 -8.2 glycosyltransferase family 4 protein compare
ABZR87_RS20650 -1.0 -1.7 aspartate dehydrogenase compare
ABZR87_RS09460 -0.9 -3.6 prephenate dehydrogenase compare
ABZR87_RS20140 -0.9 -2.0 PAAR domain-containing protein compare
ABZR87_RS01615 -0.9 -2.0 RNB domain-containing ribonuclease compare
ABZR87_RS15440 -0.9 -2.6 ribonuclease G compare
ABZR87_RS10085 -0.9 -1.5 Rne/Rng family ribonuclease compare
ABZR87_RS02330 -0.9 -5.3 cytochrome o ubiquinol oxidase subunit I compare
ABZR87_RS08720 -0.9 -5.8 HAD family hydrolase compare
ABZR87_RS17310 -0.9 -5.0 PadR family transcriptional regulator compare
ABZR87_RS03265 -0.9 -2.5 high-potential iron-sulfur protein compare
ABZR87_RS22000 -0.9 -2.0 hypothetical protein compare
ABZR87_RS15495 -0.9 -5.8 O-antigen ligase family protein compare
ABZR87_RS14965 -0.9 -1.8 DUF3619 family protein compare
ABZR87_RS11940 -0.9 -2.1 SsrA-binding protein SmpB compare
ABZR87_RS04240 -0.9 -2.0 heavy-metal-associated domain-containing protein compare
ABZR87_RS15485 -0.9 -2.9 glycosyltransferase family 2 protein compare
ABZR87_RS05140 -0.9 -1.5 ATP-binding protein compare
ABZR87_RS12960 -0.8 -0.9 head completion/stabilization protein compare
ABZR87_RS08725 -0.8 -6.9 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS18745 -0.8 -4.0 hypothetical protein compare
ABZR87_RS18190 -0.8 -1.5 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS00830 -0.8 -1.9 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS16515 -0.8 -1.3 helix-turn-helix domain-containing protein compare
ABZR87_RS08670 -0.8 -4.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS09915 -0.8 -1.9 endonuclease III compare
ABZR87_RS11245 -0.8 -3.3 translational GTPase TypA compare
ABZR87_RS06670 -0.8 -2.4 MarR family transcriptional regulator compare
ABZR87_RS00965 -0.8 -5.2 bifunctional anthranilate synthase component I family protein/class IV aminotransferase compare
ABZR87_RS07735 -0.8 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS11050 -0.8 -2.2 rhodanese-like domain-containing protein compare
ABZR87_RS18740 -0.8 -3.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS06725 -0.8 -6.5 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS04785 -0.8 -4.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS09615 -0.8 -0.7 50S ribosomal protein L19 compare
ABZR87_RS13285 -0.7 -4.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS19435 -0.7 -1.7 trehalose-phosphatase compare
ABZR87_RS08980 -0.7 -1.8 cell envelope integrity protein TolA compare
ABZR87_RS00795 -0.7 -2.1 site-specific tyrosine recombinase XerD compare
ABZR87_RS10120 -0.7 -1.5 YceD family protein compare
ABZR87_RS22340 -0.7 -0.9 hypothetical protein compare
ABZR87_RS00845 -0.7 -2.9 DUF3579 domain-containing protein compare
ABZR87_RS18735 -0.7 -1.7 sulfite exporter TauE/SafE family protein compare
ABZR87_RS21245 -0.7 -0.8 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS03075 -0.7 -4.7 AGE family epimerase/isomerase compare
ABZR87_RS19100 -0.7 -2.8 RidA family protein compare
ABZR87_RS17565 -0.7 -1.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS23180 -0.7 -1.1 ABC transporter ATP-binding protein compare
ABZR87_RS08970 -0.7 -3.3 protein TolQ compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Ralstonia sp. UNC404CL21Col

For carbon source Sodium succinate dibasic hexahydrate across organisms