Experiment set9IT090 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Paclitaxel 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -3.7 -6.1 SirA-like protein compare
Psyr_4091 -3.5 -7.0 8-oxo-dGTPase compare
Psyr_0034 -3.3 -3.2 tryptophan synthase, beta chain compare
Psyr_4683 -3.3 -6.8 dethiobiotin synthase compare
Psyr_4740 -3.1 -9.2 thiazole-phosphate synthase compare
Psyr_4341 -2.9 -7.5 thiamine-phosphate diphosphorylase compare
Psyr_4687 -2.9 -10.1 biotin synthase compare
Psyr_4340 -2.9 -10.7 phosphomethylpyrimidine kinase, putative compare
Psyr_0454 -2.7 -8.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4684 -2.7 -4.0 biotin synthesis protein BioC compare
Psyr_0951 -2.6 -3.7 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4203 -2.5 -2.9 SsrA-binding protein compare
Psyr_0535 -2.3 -3.5 toluene tolerance protein, putative compare
Psyr_4686 -2.1 -7.3 8-amino-7-oxononanoate synthase compare
Psyr_5072 -2.1 -1.8 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0475 -2.1 -4.2 Protein of unknown function YGGT compare
Psyr_0044 -2.0 -1.9 transferase hexapeptide repeat protein compare
Psyr_0835 -2.0 -6.1 transcriptional regulator, TraR/DksA family compare
Psyr_1747 -1.9 -6.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_4115 -1.9 -3.3 phosphoheptose isomerase compare
Psyr_0033 -1.8 -3.0 tryptophan synthase, alpha chain compare
Psyr_3419 -1.8 -4.9 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3179 -1.8 -3.0 DNA translocase FtsK compare
Psyr_3202 -1.7 -2.0 NADH dehydrogenase subunit G compare
Psyr_0574 -1.7 -5.2 protease FtsH subunit HflK compare
Psyr_3055 -1.6 -1.9 Aminoglycoside phosphotransferase compare
Psyr_1946 -1.6 -1.9 diaminobutyrate aminotransferase apoenzyme compare
Psyr_4519 -1.6 -6.2 General substrate transporter:Major facilitator superfamily compare
Psyr_1373 -1.6 -2.5 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_2593 -1.5 -3.6 ABC transporter compare
Psyr_2980 -1.5 -2.5 UDP-glucose pyrophosphorylase compare
Psyr_2591 -1.5 -5.7 transport system permease protein compare
Psyr_1408 -1.5 -2.7 Holliday junction endonuclease RuvC compare
Psyr_0575 -1.5 -2.6 protease FtsH subunit HflC compare
Psyr_0529 -1.5 -4.6 Glycosyl transferase, group 1 compare
Psyr_1418 -1.5 -2.6 Radical SAM compare
Psyr_3677 -1.4 -2.3 Aminotransferase, class I and II compare
Psyr_5133 -1.4 -4.3 tRNA modification GTPase trmE compare
Psyr_5135 -1.4 -0.7 Protein of unknown function DUF37 compare
Psyr_5132 -1.4 -2.7 Glucose-inhibited division protein A subfamily compare
Psyr_2973 -1.4 -2.3 Glyoxalase I compare
Psyr_3208 -1.4 -2.2 NADH dehydrogenase subunit M compare
Psyr_4194 -1.3 -3.7 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1910 -1.3 -4.9 VacJ-like lipoprotein compare
Psyr_4786 -1.3 -1.8 hypothetical protein compare
Psyr_3315 -1.3 -2.0 conserved hypothetical protein compare
Psyr_2582 -1.3 -6.8 TonB-dependent siderophore receptor compare
Psyr_0885 -1.3 -1.9 conserved hypothetical protein compare
Psyr_1419 -1.3 -3.5 preQ(0) biosynthesis protein QueC compare
Psyr_5067 -1.3 -3.9 conserved hypothetical protein compare
Psyr_1613 -1.3 -4.1 septum site-determining protein MinC compare
Psyr_3755 -1.3 -2.0 conserved hypothetical protein compare
Psyr_1748 -1.3 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0464 -1.3 -2.0 hypothetical protein compare
Psyr_1556 -1.2 -1.8 hypothetical protein compare
Psyr_2266 -1.2 -2.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4788 -1.2 -2.0 lipoprotein, putative compare
Psyr_3954 -1.2 -4.1 GTP-binding protein LepA compare
Psyr_1596 -1.2 -1.5 Helix-turn-helix motif protein compare
Psyr_2854 -1.2 -3.7 conserved hypothetical protein compare
Psyr_2592 -1.2 -3.8 transport system permease protein compare
Psyr_4089 -1.2 -4.2 PAS compare
Psyr_4512 -1.2 -4.3 putative phage-related protein compare
Psyr_1410 -1.2 -2.6 Holliday junction DNA helicase RuvB compare
Psyr_4774 -1.1 -2.0 Hypothetical protein compare
Psyr_0849 -1.1 -6.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4361 -1.1 -2.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_1379 -1.1 -1.9 Regulatory protein RecX compare
Psyr_3926 -1.1 -2.2 transcriptional regulator, PadR family compare
Psyr_1227 -1.1 -2.2 Queuosine biosynthesis protein compare
Psyr_1530 -1.1 -1.9 hypothetical protein compare
Psyr_2280 -1.1 -3.2 Alkanesulfonate monooxygenase compare
Psyr_1663 -1.1 -3.6 phosphoribosylanthranilate isomerase compare
Psyr_1800 -1.1 -3.8 transcriptional regulator, LysR family compare
Psyr_3904 -1.1 -5.4 Major intrinsic protein compare
Psyr_2897 -1.1 -4.0 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4566 -1.1 -5.0 Peptidase M23B compare
Psyr_0531 -1.1 -1.8 LmbE-like protein compare
Psyr_0491 -1.0 -3.5 chemotaxis sensory transducer compare
Psyr_3013 -1.0 -1.6 magnesium chelatase subunit ChlD compare
Psyr_2351 -1.0 -2.9 tRNA synthetase, class-II (G, H, P and S) compare
Psyr_4362 -1.0 -1.2 Rare lipoprotein A compare
Psyr_0826 -1.0 -4.3 glucose-6-phosphate isomerase compare
Psyr_0917 -1.0 -6.4 ABC-2 compare
Psyr_3198 -1.0 -1.3 NADH dehydrogenase subunit B compare
Psyr_0918 -1.0 -7.4 ABC transporter compare
Psyr_4278 -1.0 -2.1 regulatory protein, LuxR compare
Psyr_4622 -1.0 -2.9 Nucleotidyl transferase compare
Psyr_2757 -1.0 -1.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4881 -1.0 -2.0 RNA methyltransferase TrmH, group 2 compare
Psyr_2137 -1.0 -1.7 molybdopterin molybdochelatase compare
Psyr_4418 -1.0 -1.9 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_0393 -1.0 -2.8 Protein of unknown function DUF971 compare
Psyr_2088 -1.0 -1.4 2-methylaconitate cis-trans isomerase compare
Psyr_0132 -1.0 -3.1 conserved hypothetical protein compare
Psyr_2573 -0.9 -2.1 transcriptional regulator, DeoR family compare
Psyr_0487 -0.9 -1.8 glutathione synthase compare
Psyr_3698 -0.9 -2.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4134 -0.9 -3.7 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0571 -0.9 -3.0 tRNA isopentenyltransferase compare
Psyr_0936 -0.9 -6.3 Glycosyl transferase, group 1 compare
Psyr_0383 -0.9 -0.8 Twin-arginine translocation protein TatB compare
Psyr_0215 -0.9 -5.8 Exodeoxyribonuclease III xth compare
Psyr_4138 -0.9 -2.4 Toluene tolerance compare
Psyr_2930 -0.9 -1.7 Glyoxalase/bleomycin resistance protein/dioxygenase compare
Psyr_2668 -0.9 -2.2 Helix-turn-helix, Fis-type compare
Psyr_3547 -0.9 -2.8 transcriptional regulator, TetR family compare
Psyr_0947 -0.9 -4.8 TPR repeat protein:TPR repeat protein compare
Psyr_1765 -0.9 -3.4 GCN5-related N-acetyltransferase compare
Psyr_1791 -0.9 -1.8 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_2733 -0.9 -2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_0916 -0.8 -5.1 GDP-mannose 4,6-dehydratase compare
Psyr_3665 -0.8 -2.2 conserved hypothetical protein compare
Psyr_4627 -0.8 -2.0 dimethyladenosine transferase compare
Psyr_4335 -0.8 -2.0 transcriptional regulator, AsnC family compare
Psyr_2990 -0.8 -1.3 conserved hypothetical protein compare
Psyr_3358 -0.8 -2.2 transmembrane pair compare
Psyr_2999 -0.8 -3.2 LmbE-like protein compare
Psyr_4991 -0.8 -1.7 hypothetical protein compare
Psyr_1140 -0.8 -2.2 Disulfide bond formation protein DsbB compare
Psyr_4158 -0.8 -4.6 conserved hypothetical protein compare
Psyr_4601 -0.8 -2.3 hypothetical protein compare
Psyr_3644 -0.8 -1.7 prephenate dehydrogenase compare
Psyr_3842 -0.8 -2.9 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_4424 -0.8 -3.5 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4144 -0.8 -0.5 Protein of unknown function DUF1239 compare
Psyr_4408 -0.8 -3.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3199 -0.8 -1.4 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3626 -0.8 -2.2 transcriptional regulator, MarR family compare
Psyr_0549 -0.8 -1.2 Metallophosphoesterase compare
Psyr_0982 -0.8 -2.4 conserved hypothetical protein compare
Psyr_1017 -0.8 -1.8 type III effector HopJ1 compare
Psyr_0255 -0.8 -1.7 glutamate-cysteine ligase compare
Psyr_1294 -0.8 -2.1 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2275 -0.8 -1.4 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_3282 -0.8 -3.5 transcriptional regulator, TetR family compare
Psyr_3193 -0.8 -1.4 Transcription factor jumonji, jmjC compare
Psyr_3701 -0.8 -1.4 thioredoxin, putative compare
Psyr_0532 -0.8 -2.3 conserved hypothetical protein compare
Psyr_4015 -0.8 -1.3 conserved domain protein compare
Psyr_3640 -0.8 -1.7 conserved hypothetical protein compare
Psyr_3637 -0.8 -5.5 Glycosyl transferase, family 4 compare
Psyr_2590 -0.8 -1.4 Periplasmic binding protein compare
Psyr_1528 -0.8 -1.6 Arc-like DNA binding protein compare
Psyr_4139 -0.8 -3.0 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_0378 -0.8 -4.6 Glycosyl transferase, family 2 compare
Psyr_0533 -0.8 -3.0 conserved hypothetical protein compare
Psyr_4893 -0.8 -0.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_3412 -0.8 -3.1 conserved domain protein compare
Psyr_1751 -0.7 -2.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0338 -0.7 -2.5 ABC transporter compare
Psyr_0838 -0.7 -1.2 Rieske [2Fe-2S] region compare
Psyr_1816 -0.7 -1.8 transcriptional regulator, GntR family compare
Psyr_4367 -0.7 -2.2 Iojap-related protein compare
Psyr_0372 -0.7 -2.2 CDS compare
Psyr_0099 -0.7 -1.4 Conserved hypothetical protein compare
Psyr_2029 -0.7 -2.0 Protein of unknown function UPF0118 compare
Psyr_1268 -0.7 -3.0 extracellular solute-binding protein, family 3:SLT compare
Psyr_0695 -0.7 -1.9 extracellular solute-binding protein, family 3 compare
Psyr_4386 -0.7 -1.8 conserved hypothetical protein compare
Psyr_0060 -0.7 -3.4 Protein of unknown function DUF513 compare
Psyr_3258 -0.7 -2.1 conserved hypothetical protein compare
Psyr_4141 -0.7 -2.6 ABC transporter compare
Psyr_4580 -0.7 -2.2 anthranilate phosphoribosyltransferase compare
Psyr_2348 -0.7 -2.2 hypothetical protein compare
Psyr_4656 -0.7 -3.5 hypothetical protein compare
Psyr_1667 -0.7 -2.7 Colicin V production protein compare
Psyr_2346 -0.7 -2.4 conserved hypothetical protein compare
Psyr_5130 -0.7 -4.0 chromosome segregation ATPase compare
Psyr_4621 -0.7 -3.5 Heat shock protein DnaJ, N-terminal compare
Psyr_3183 -0.7 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Psyr_2755 -0.7 -1.9 2-nitropropane dioxygenase, NPD compare
Psyr_3015 -0.7 -3.6 cobaltochelatase CobN subunit compare
Psyr_1024 -0.7 -1.1 Flavodoxin/nitric oxide synthase compare
Psyr_3527 -0.7 -3.2 glutathione-independent formaldehyde dehydrogenase compare
Psyr_0385 -0.7 -2.1 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1963 -0.7 -2.7 Cyclic peptide transporter compare
Psyr_2752 -0.7 -1.6 conserved hypothetical protein compare
Psyr_1236 -0.7 -2.1 transcriptional regulator, BadM/Rrf2 family compare
Psyr_1371 -0.7 -2.9 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_4464 -0.7 -0.9 lipoprotein, putative compare
Psyr_2488 -0.7 -1.9 hypothetical protein compare
Psyr_0263 -0.7 -2.3 Two-component response regulator AlgB compare
Psyr_1783 -0.7 -1.9 CDS compare
Psyr_0579 -0.7 -4.2 RNAse R compare
Psyr_0920 -0.7 -5.5 Glycosyl transferase, group 1 compare
Psyr_3005 -0.7 -1.0 3-oxoadipate enol-lactonase compare
Psyr_1251 -0.7 -1.7 quinoprotein compare
Psyr_0041 -0.7 -1.8 Protein of unknown function DUF1161 compare
Psyr_2807 -0.6 -0.5 NinB compare
Psyr_1930 -0.6 -2.1 hypothetical protein compare
Psyr_0447 -0.6 -1.5 malonate decarboxylase subunit, putative compare
Psyr_1050 -0.6 -1.9 conserved hypothetical protein compare
Psyr_3289 -0.6 -1.6 3-ketoacyl-CoA thiolase compare
Psyr_3525 -0.6 -1.3 3-hydroxyisobutyrate dehydrogenase compare
Psyr_4884 -0.6 -2.6 Rhodanese-like protein compare
Psyr_1719 -0.6 -1.0 conserved hypothetical protein compare
Psyr_1225 -0.6 -2.4 hypothetical protein compare
Psyr_2784 -0.6 -2.3 phage-related conserved hypothetical protein compare
Psyr_0674 -0.6 -1.7 Protein of unknown function UPF0029 compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Paclitaxel across organisms