Experiment set9IT089 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Ginkgolide A 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_4740 -3.7 -8.8 thiazole-phosphate synthase compare
Psyr_0951 -3.7 -5.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4340 -3.7 -12.0 phosphomethylpyrimidine kinase, putative compare
Psyr_1544 -3.5 -6.2 SirA-like protein compare
Psyr_4683 -3.4 -6.9 dethiobiotin synthase compare
Psyr_0034 -3.3 -3.9 tryptophan synthase, beta chain compare
Psyr_2594 -3.2 -2.1 unknown conserved protein in bacilli compare
Psyr_4687 -2.9 -11.1 biotin synthase compare
Psyr_5133 -2.7 -5.3 tRNA modification GTPase trmE compare
Psyr_4341 -2.7 -8.2 thiamine-phosphate diphosphorylase compare
Psyr_1373 -2.6 -4.6 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4091 -2.5 -5.9 8-oxo-dGTPase compare
Psyr_0529 -2.4 -5.7 Glycosyl transferase, group 1 compare
Psyr_4754 -2.4 -2.4 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0033 -2.3 -3.1 tryptophan synthase, alpha chain compare
Psyr_2980 -2.3 -4.2 UDP-glucose pyrophosphorylase compare
Psyr_4203 -2.3 -3.6 SsrA-binding protein compare
Psyr_4015 -2.2 -2.4 conserved domain protein compare
Psyr_1613 -2.2 -5.2 septum site-determining protein MinC compare
Psyr_5132 -2.1 -4.0 Glucose-inhibited division protein A subfamily compare
Psyr_3013 -2.1 -2.4 magnesium chelatase subunit ChlD compare
Psyr_4194 -2.1 -4.0 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0531 -2.1 -3.2 LmbE-like protein compare
Psyr_0454 -2.1 -7.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4001 -2.0 -4.0 conserved domain protein compare
Psyr_0835 -1.9 -5.6 transcriptional regulator, TraR/DksA family compare
Psyr_2591 -1.9 -5.8 transport system permease protein compare
Psyr_4519 -1.8 -6.3 General substrate transporter:Major facilitator superfamily compare
Psyr_3179 -1.8 -3.1 DNA translocase FtsK compare
Psyr_2592 -1.8 -4.3 transport system permease protein compare
Psyr_4684 -1.8 -3.4 biotin synthesis protein BioC compare
Psyr_3473 -1.8 -2.9 Flagellar P-ring protein compare
Psyr_3005 -1.8 -2.7 3-oxoadipate enol-lactonase compare
Psyr_4686 -1.7 -5.7 8-amino-7-oxononanoate synthase compare
Psyr_0475 -1.7 -3.6 Protein of unknown function YGGT compare
Psyr_1663 -1.7 -3.4 phosphoribosylanthranilate isomerase compare
Psyr_0574 -1.6 -4.4 protease FtsH subunit HflK compare
Psyr_3193 -1.6 -2.7 Transcription factor jumonji, jmjC compare
Psyr_4115 -1.6 -2.8 phosphoheptose isomerase compare
Psyr_0917 -1.6 -8.7 ABC-2 compare
Psyr_1094 -1.6 -4.1 cold-shock DNA-binding protein family compare
Psyr_5067 -1.6 -6.2 conserved hypothetical protein compare
Psyr_0735 -1.6 -1.9 Peptidase S24, S26A and S26B compare
Psyr_5135 -1.5 -0.8 Protein of unknown function DUF37 compare
Psyr_4362 -1.5 -2.0 Rare lipoprotein A compare
Psyr_4627 -1.5 -2.3 dimethyladenosine transferase compare
Psyr_3701 -1.5 -2.3 thioredoxin, putative compare
Psyr_3202 -1.5 -2.0 NADH dehydrogenase subunit G compare
Psyr_0918 -1.5 -9.9 ABC transporter compare
Psyr_1418 -1.4 -3.6 Radical SAM compare
Psyr_3692 -1.4 -1.9 conserved hypothetical protein compare
Psyr_4566 -1.4 -7.0 Peptidase M23B compare
Psyr_3419 -1.4 -4.2 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_0936 -1.4 -8.7 Glycosyl transferase, group 1 compare
Psyr_3152 -1.4 -1.7 hypothetical protein compare
Psyr_1024 -1.4 -1.9 Flavodoxin/nitric oxide synthase compare
Psyr_1408 -1.4 -2.5 Holliday junction endonuclease RuvC compare
Psyr_1378 -1.4 -2.7 RecA protein compare
Psyr_3174 -1.3 -4.2 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_2854 -1.3 -4.1 conserved hypothetical protein compare
Psyr_4141 -1.3 -4.2 ABC transporter compare
Psyr_1717 -1.3 -2.0 TPR repeat:von Willebrand factor, type A compare
Psyr_3954 -1.3 -4.5 GTP-binding protein LepA compare
Psyr_0487 -1.3 -2.2 glutathione synthase compare
Psyr_2593 -1.3 -3.2 ABC transporter compare
Psyr_3698 -1.3 -4.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_1910 -1.3 -3.9 VacJ-like lipoprotein compare
Psyr_3462 -1.2 -3.2 conserved hypothetical protein compare
Psyr_0914 -1.2 -7.0 Glycosyl transferase, group 1 compare
Psyr_0885 -1.2 -2.6 conserved hypothetical protein compare
Psyr_2105 -1.2 -3.5 conserved hypothetical protein compare
Psyr_3637 -1.2 -7.0 Glycosyl transferase, family 4 compare
Psyr_2590 -1.2 -2.5 Periplasmic binding protein compare
Psyr_0383 -1.2 -1.0 Twin-arginine translocation protein TatB compare
Psyr_2820 -1.2 -1.9 RecT protein compare
Psyr_1530 -1.2 -2.6 hypothetical protein compare
Psyr_4139 -1.2 -4.7 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_0565 -1.2 -2.9 Protein of unknown function UPF0126 compare
Psyr_0916 -1.2 -6.3 GDP-mannose 4,6-dehydratase compare
Psyr_2514 -1.2 -3.2 ABC transporter compare
Psyr_0571 -1.2 -3.5 tRNA isopentenyltransferase compare
Psyr_2150 -1.2 -3.4 protein of unknown function DUF903 compare
Psyr_3581 -1.2 -4.5 ribosomal large subunit pseudouridine synthase B compare
Psyr_0831 -1.2 -2.2 Two-component response regulator CbrB compare
Psyr_1953 -1.2 -1.3 conserved hypothetical protein compare
Psyr_2266 -1.2 -1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4874 -1.2 -2.0 ABC transporter compare
Psyr_3620 -1.1 -1.9 hypothetical protein compare
Psyr_3427 -1.1 -2.2 conserved hypothetical protein compare
Psyr_2582 -1.1 -6.4 TonB-dependent siderophore receptor compare
Psyr_3008 -1.1 -4.0 Undecaprenyl-diphosphatase compare
Psyr_0303 -1.1 -2.2 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_2144 -1.1 -1.5 conserved hypothetical protein compare
Psyr_4512 -1.1 -4.9 putative phage-related protein compare
Psyr_4158 -1.1 -5.9 conserved hypothetical protein compare
Psyr_3290 -1.1 -2.6 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_0838 -1.1 -1.8 Rieske [2Fe-2S] region compare
Psyr_3791 -1.1 -2.7 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_4300 -1.1 -1.8 DNA polymerase III, epsilon subunit compare
Psyr_3636 -1.1 -6.5 Polysaccharide biosynthesis protein CapD compare
Psyr_4682 -1.0 -1.4 conserved hypothetical protein compare
Psyr_2312 -1.0 -1.2 Protein of unknown function DUF24 compare
Psyr_0826 -1.0 -3.8 glucose-6-phosphate isomerase compare
Psyr_2259 -1.0 -2.5 Beta-lactamase-like protein compare
Psyr_4335 -1.0 -1.1 transcriptional regulator, AsnC family compare
Psyr_4581 -1.0 -1.4 anthranilate synthase, component II compare
Psyr_0920 -1.0 -8.2 Glycosyl transferase, group 1 compare
Psyr_5065 -1.0 -4.8 ATP-dependent DNA helicase UvrD compare
Psyr_3476 -1.0 -2.1 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_2573 -1.0 -2.4 transcriptional regulator, DeoR family compare
Psyr_3463 -1.0 -2.5 Flagellar protein FliS compare
Psyr_0270 -1.0 -2.4 DNA polymerase I compare
Psyr_1268 -1.0 -3.7 extracellular solute-binding protein, family 3:SLT compare
Psyr_4830 -1.0 -2.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3904 -1.0 -4.6 Major intrinsic protein compare
Psyr_0219 -1.0 -4.8 phosphomannomutase compare
Psyr_4460 -1.0 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_2386 -1.0 -1.6 hypothetical protein compare
Psyr_4143 -1.0 -1.4 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_3934 -1.0 -1.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_4622 -1.0 -3.3 Nucleotidyl transferase compare
Psyr_1227 -1.0 -1.9 Queuosine biosynthesis protein compare
Psyr_2887 -1.0 -1.2 Endoribonuclease L-PSP compare
Psyr_3674 -1.0 -1.7 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_3667 -0.9 -1.7 conserved hypothetical protein compare
Psyr_4100 -0.9 -2.6 D-alanine--D-alanine ligase compare
Psyr_1371 -0.9 -4.2 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_1251 -0.9 -2.0 quinoprotein compare
Psyr_4043 -0.9 -1.7 hypothetical protein compare
Psyr_1747 -0.9 -2.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0528 -0.9 -1.3 Carbamoyltransferase compare
Psyr_1097 -0.9 -1.6 glycine cleavage system H protein compare
Psyr_1236 -0.9 -2.2 transcriptional regulator, BadM/Rrf2 family compare
Psyr_3638 -0.9 -2.1 UDP-glucose 4-epimerase, putative compare
Psyr_1379 -0.9 -2.0 Regulatory protein RecX compare
Psyr_3208 -0.9 -1.6 NADH dehydrogenase subunit M compare
Psyr_3358 -0.9 -1.6 transmembrane pair compare
Psyr_4897 -0.9 -2.2 imidazoleglycerol-phosphate dehydratase compare
Psyr_4089 -0.9 -3.9 PAS compare
Psyr_0849 -0.9 -4.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3886 -0.9 -1.7 methionyl-tRNA synthetase compare
Psyr_2855 -0.9 -2.1 methionine synthase (B12-independent) compare
Psyr_2360 -0.9 -2.1 CBS compare
Psyr_2231 -0.9 -2.5 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_1277 -0.9 -1.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_3644 -0.9 -1.8 prephenate dehydrogenase compare
Psyr_4601 -0.9 -0.9 hypothetical protein compare
Psyr_4752 -0.9 -3.1 Insulinase-like:Peptidase M16, C-terminal compare
Psyr_1056 -0.8 -1.8 Poly(beta-D-mannuronate) lyase compare
Psyr_0982 -0.8 -2.7 conserved hypothetical protein compare
Psyr_2897 -0.8 -2.7 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3162 -0.8 -2.3 Metalloprotease inhibitor/calysin compare
Psyr_2341 -0.8 -2.7 conserved hypothetical protein compare
Psyr_0919 -0.8 -5.2 Chromosome segregation ATPase-like protein compare
Psyr_0784 -0.8 -1.7 CheW-like protein compare
Psyr_2211 -0.8 -1.9 monooxygenase, NtaA/SnaA/SoxA family compare
Psyr_1167 -0.8 -3.8 nucleoside ABC transporter membrane protein compare
Psyr_1507 -0.8 -2.5 hypothetical protein compare
Psyr_0966 -0.8 -3.2 Conserved hypothetical protein YfcH compare
Psyr_0549 -0.8 -1.1 Metallophosphoesterase compare
Psyr_1154 -0.8 -2.2 Copper/Zinc superoxide dismutase compare
Psyr_2351 -0.8 -1.9 tRNA synthetase, class-II (G, H, P and S) compare
Psyr_1018 -0.8 -2.3 Protein of unknown function DUF1244 compare
Psyr_3688 -0.8 -1.5 conserved hypothetical protein compare
Psyr_0378 -0.8 -4.3 Glycosyl transferase, family 2 compare
Psyr_1729 -0.8 -3.5 transcriptional regulator, MarR family compare
Psyr_1900 -0.8 -2.7 ApbE-like lipoprotein compare
Psyr_0534 -0.8 -5.0 membrane protein, putative compare
Psyr_4722 -0.8 -2.8 conserved hypothetical protein compare
Psyr_3014 -0.8 -1.8 protoporphyrin IX magnesium-chelatase compare
Psyr_3180 -0.8 -2.9 Leucyl/phenylalanyl-tRNA--protein transferase compare
Psyr_4178 -0.8 -3.8 tRNA pseudouridine synthase B compare
Psyr_1419 -0.7 -1.9 preQ(0) biosynthesis protein QueC compare
Psyr_4842 -0.7 -3.3 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_2347 -0.7 -2.3 hypothetical protein compare
Psyr_1718 -0.7 -1.5 von Willebrand factor, type A compare
Psyr_4730 -0.7 -1.1 FecR protein compare
Psyr_2324 -0.7 -2.5 conserved hypothetical protein compare
Psyr_1667 -0.7 -3.1 Colicin V production protein compare
Psyr_0579 -0.7 -4.2 RNAse R compare
Psyr_1666 -0.7 -2.2 Sporulation related protein compare
Psyr_1824 -0.7 -1.8 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_4845 -0.7 -1.6 conserved hypothetical protein compare
Psyr_2056 -0.7 -1.8 CHAD compare
Psyr_1944 -0.7 -1.4 Thioesterase compare
Psyr_2743 -0.7 -1.8 Lysine exporter protein (LYSE/YGGA) compare
Psyr_0255 -0.7 -1.0 glutamate-cysteine ligase compare
Psyr_1614 -0.7 -0.8 lipid A biosynthesis acyltransferase compare
Psyr_3459 -0.7 -1.4 Helix-turn-helix, Fis-type compare
Psyr_1006 -0.7 -3.2 Phospholipid/glycerol acyltransferase compare
Psyr_4673 -0.7 -1.5 Coenzyme PQQ synthesis D compare
Psyr_0479 -0.7 -2.4 NLP/P60 compare
Psyr_1755 -0.7 -3.2 ABC transporter compare
Psyr_4055 -0.7 -2.0 conserved domain protein compare
Psyr_2285 -0.7 -1.0 Twin-arginine translocation pathway signal compare
Psyr_1937 -0.7 -1.6 UspA compare
Psyr_2280 -0.7 -2.6 Alkanesulfonate monooxygenase compare
Psyr_2515 -0.7 -3.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2873 -0.7 -1.4 Acyl-CoA dehydrogenase, C-terminal compare
Psyr_4831 -0.7 -1.8 ABC transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Ginkgolide A across organisms