Experiment set9IT089 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Ginkgolide A 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_0137 +1.4 2.4 outer membrane transport energization protein ExbD compare
Psyr_1447 +1.2 2.3 conserved hypothetical protein compare
Psyr_0857 +1.1 1.9 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_2253 +1.1 2.7 Phosphonate metabolism compare
Psyr_2787 +1.0 2.1 hypothetical protein compare
Psyr_3116 +1.0 2.2 transcriptional regulator, CdaR family compare
Psyr_3262 +1.0 2.0 dnaK suppressor protein, putative compare
Psyr_4049 +1.0 3.0 lyso-ornithine lipid acyltransferase compare
Psyr_3589 +0.9 2.5 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0200 +0.9 5.2 conserved hypothetical protein compare
Psyr_0435 +0.9 1.7 membrane protein, putative compare
Psyr_1975 +0.9 1.7 Integrase, catalytic region compare
Psyr_1247 +0.9 1.7 conserved hypothetical protein compare
Psyr_4463 +0.9 1.5 Protein of unknown function DUF193 compare
Psyr_4480 +0.8 1.6 outer membrane transport energization protein TonB compare
Psyr_0231 +0.8 2.0 conserved hypothetical protein compare
Psyr_4077 +0.8 2.1 Methylated-DNA-[protein]-cysteine S-methyltransferase compare
Psyr_4136 +0.8 1.4 BolA-like protein compare
Psyr_2481 +0.8 2.7 thiol peroxidase (atypical 2-Cys peroxiredoxin) compare
Psyr_2292 +0.8 1.8 L-glutaminase compare
Psyr_4450 +0.8 3.1 transcriptional regulator, TetR family compare
Psyr_1719 +0.8 1.5 conserved hypothetical protein compare
Psyr_2778 +0.8 2.9 Phage minor tail protein L compare
Psyr_3632 +0.8 1.8 conserved hypothetical protein compare
Psyr_1779 +0.8 2.4 hypothetical protein compare
Psyr_3255 +0.8 2.7 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_1875 +0.8 1.5 Enoyl-CoA hydratase/isomerase compare
Psyr_2014 +0.8 2.0 conserved hypothetical protein compare
Psyr_2100 +0.8 4.2 assimilatory nitrate reductase (NADH) beta subunit compare
Psyr_3424 +0.8 2.5 conserved hypothetical protein compare
Psyr_1872 +0.8 2.4 conserved hypothetical protein compare
Psyr_3081 +0.8 1.6 Secretion protein HlyD compare
Psyr_1802 +0.8 1.1 transcriptional regulator, AsnC family compare
Psyr_1377 +0.8 1.8 CinA, C-terminal compare
Psyr_4774 +0.8 1.0 Hypothetical protein compare
Psyr_2781 +0.7 2.4 hypothetical protein compare
Psyr_0434 +0.7 1.9 AMP-dependent synthetase and ligase compare
Psyr_5036 +0.7 1.1 Response regulator receiver compare
Psyr_3296 +0.7 2.0 MOSC:MOSC, N-terminal beta barrel compare
Psyr_1212 +0.7 1.9 type III secretion protein HrpO compare
Psyr_4140 +0.7 1.2 Protein of unknown function DUF140 compare
Psyr_2823 +0.7 1.1 hypothetical protein compare
Psyr_0153 +0.7 2.6 conserved hypothetical protein compare
Psyr_4175 +0.7 2.2 Transport-associated protein compare
Psyr_2134 +0.7 1.5 protein of unknown function DUF903 compare
Psyr_0214 +0.7 2.4 conserved hypothetical protein compare
Psyr_2317 +0.7 1.6 CDS compare
Psyr_3867 +0.7 1.3 hypothetical protein compare
Psyr_2471 +0.7 1.3 hydroxymethylglutaryl-CoA lyase compare
Psyr_3751 +0.7 1.6 Carbon storage regulator compare
Psyr_3703 +0.7 2.5 Flavodoxin/nitric oxide synthase compare
Psyr_2694 +0.7 1.5 conserved hypothetical protein compare
Psyr_1193 +0.7 1.3 type III helper protein HrpZ1 compare
Psyr_2272 +0.7 2.7 Helix-turn-helix motif protein compare
Psyr_2039 +0.7 1.0 Fimbrial protein compare
Psyr_0441 +0.7 2.1 conserved hypothetical protein compare
Psyr_0426 +0.7 1.1 lipoprotein, putative compare
Psyr_1217 +0.7 2.2 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_2867 +0.7 2.6 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1844 +0.7 1.7 conserved hypothetical protein compare
Psyr_0447 +0.7 1.5 malonate decarboxylase subunit, putative compare
Psyr_1832 +0.7 1.0 Exonuclease compare
Psyr_2563 +0.7 1.6 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_2260 +0.7 3.1 Amidase compare
Psyr_4301 +0.7 2.3 Protein of unknown function DUF88 compare
Psyr_1048 +0.7 2.3 Secretion protein HlyD compare
Psyr_1678 +0.7 1.0 Hypothetical protein compare
Psyr_2765 +0.7 1.6 conserved domain protein compare
Psyr_3066 +0.7 2.4 conserved hypothetical protein compare
Psyr_2114 +0.6 2.1 two component transcriptional regulator, LuxR family compare
Psyr_2870 +0.6 1.5 CDS compare
Psyr_2275 +0.6 2.0 glutamate synthase (NADPH) GltB3 subunit compare
Psyr_2790 +0.6 2.3 conserved hypothetical protein compare
Psyr_3227 +0.6 3.5 Glycosyl transferase, family 2 compare
Psyr_3394 +0.6 2.0 conserved hypothetical protein compare
Psyr_2249 +0.6 1.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1968 +0.6 1.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3280 +0.6 1.2 methylthioadenosine phosphorylase compare
Psyr_3395 +0.6 3.0 FlhB domain protein compare
Psyr_3448 +0.6 2.8 Flagellar basal body-associated protein FliL compare
Psyr_2556 +0.6 1.8 dCTP deaminase compare
Psyr_2262 +0.6 0.8 Peptidase M20:Peptidase M20 compare
Psyr_3555 +0.6 1.1 aspartate kinase compare
Psyr_4257 +0.6 1.7 Uncharacterized protein UPF0114 compare
Psyr_3594 +0.6 1.8 membrane protein-like protein compare
Psyr_2833 +0.6 1.4 CDS compare
Psyr_3758 +0.6 2.7 Substrate-binding region of ABC-type glycine betaine transport system compare
Psyr_4658 +0.6 1.1 CDS compare
Psyr_2557 +0.6 1.8 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_1629 +0.6 1.9 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_5033 +0.6 3.3 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_4494 +0.6 3.7 ABC-type phosphate/phosphonate transport system periplasmic component-like protein compare
Psyr_4476 +0.6 2.5 dTDP-4-dehydrorhamnose reductase compare
Psyr_1752 +0.6 2.8 transcriptional regulator, HxlR family compare
Psyr_2155 +0.6 1.9 Carbohydrate kinase, PfkB compare
Psyr_3748 +0.6 2.8 GCN5-related N-acetyltransferase compare
Psyr_3548 +0.6 2.7 Glutathione S-transferase, N-terminal compare
Psyr_1852 +0.6 1.0 conserved hypothetical protein compare
Psyr_4050 +0.6 1.4 Protein of unknown function DUF479 compare
Psyr_0781 +0.6 1.7 Protein-glutamate methylesterase compare
Psyr_3336 +0.6 2.4 transcriptional regulator, LacI family compare
Psyr_0194 +0.6 1.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_2570 +0.6 2.5 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_2371 +0.6 2.4 L-arabinose-binding protein compare
Psyr_2877 +0.6 2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_4232 +0.6 2.7 Protein of unknown function DUF541 compare
Psyr_2126 +0.6 2.0 4-carboxymuconolactone decarboxylase compare
Psyr_3830 +0.6 2.5 3-oxoacyl-[acyl-carrier protein] synthase compare
Psyr_3127 +0.6 1.3 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3661 +0.6 1.7 Fumarate hydratase, class II compare
Psyr_2053 +0.6 2.1 moxR protein, putative compare
Psyr_1123 +0.6 1.9 conserved hypothetical protein compare
Psyr_2055 +0.6 2.5 Transglutaminase-like protein compare
Psyr_3753 +0.6 2.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_0248 +0.6 1.1 conserved hypothetical protein compare
Psyr_2337 +0.5 1.2 conserved hypothetical protein compare
Psyr_1600 +0.5 1.7 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_1911 +0.5 1.4 conserved hypothetical protein compare
Psyr_3083 +0.5 1.2 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0774 +0.5 1.4 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_0348 +0.5 2.4 conserved hypothetical protein compare
Psyr_3189 +0.5 2.6 NUDIX hydrolase compare
Psyr_2847 +0.5 1.8 hypothetical protein compare
Psyr_4789 +0.5 2.1 lipoprotein, putative compare
Psyr_3946 +0.5 1.2 Proteobacterial methyltransferase compare
Psyr_0432 +0.5 1.1 conserved hypothetical protein compare
Psyr_3004 +0.5 1.7 transcriptional regulator, LysR family compare
Psyr_3210 +0.5 2.1 Protein of unknown function UPF0118 compare
Psyr_0840 +0.5 1.6 Pentapeptide repeat protein compare
Psyr_3172 +0.5 2.4 Glycosyl transferase, family 3 compare
Psyr_1687 +0.5 1.8 Rhomboid-like protein compare
Psyr_2605 +0.5 1.6 transposase, putative compare
Psyr_4583 +0.5 1.8 Glycoside hydrolase, family 19 compare
Psyr_2486 +0.5 2.4 diguanylate cyclase/phosphodiesterase compare
Psyr_2393 +0.5 1.4 Flavin reductase-like protein compare
Psyr_4714 +0.5 2.4 Sarcosine oxidase, delta subunit, heterotetrameric compare
Psyr_4045 +0.5 2.1 YceI compare
Psyr_0477 +0.5 2.3 Protein of unknown function UPF0001 compare
Psyr_2243 +0.5 1.5 Endoribonuclease L-PSP compare
Psyr_2983 +0.5 1.8 conserved domain protein compare
Psyr_3343 +0.5 1.9 GCN5-related N-acetyltransferase compare
Psyr_4128 +0.5 2.3 sulfate adenylyltransferase subunit 2 compare
Psyr_2225 +0.5 1.0 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_2830 +0.5 0.9 conserved hypothetical protein compare
Psyr_1211 +0.5 2.0 type III secretion protein HrpP compare
Psyr_0822 +0.5 0.6 1-phosphofructokinase compare
Psyr_1918 +0.5 2.6 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_2564 +0.5 2.1 transcriptional regulator, GntR family compare
Psyr_1334 +0.5 1.1 Cysteine desulfuration protein SufE compare
Psyr_3681 +0.5 1.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_0294 +0.5 2.3 Exopolyphosphatase compare
Psyr_3191 +0.5 1.5 Protein of unknown function DUF489 compare
Psyr_4801 +0.5 0.8 Outer membrane efflux protein compare
Psyr_4161 +0.5 0.8 Rod shape-determining protein MreD compare
Psyr_1829 +0.5 1.3 conserved hypothetical protein compare
Psyr_5074 +0.5 2.3 conserved hypothetical protein compare
Psyr_1916 +0.5 1.9 Peptidase S24, S26A and S26B compare
Psyr_3318 +0.5 1.5 conserved hypothetical protein compare
Psyr_4294 +0.5 1.5 Histone deacetylase family protein compare
Psyr_0746 +0.5 1.9 IS66 Orf2 like protein compare
Psyr_4891 +0.5 2.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3826 +0.5 1.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_0845 +0.5 0.9 conserved hypothetical protein compare
Psyr_0076 +0.5 1.7 Xanthine phosphoribosyltransferase compare
Psyr_4577 +0.5 1.1 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_3653 +0.5 2.1 GGDEF domain protein compare
Psyr_3841 +0.5 0.9 conserved hypothetical protein compare
Psyr_0167 +0.5 1.6 hypothetical protein compare
Psyr_4285 +0.5 1.1 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_4466 +0.5 1.5 Thioredoxin compare
Psyr_0099 +0.5 1.4 Conserved hypothetical protein compare
Psyr_1040 +0.5 1.8 RNA polymerase sigma factor, ECF subfamily compare
Psyr_0960 +0.5 1.9 conserved hypothetical protein compare
Psyr_2507 +0.5 1.2 Endoribonuclease L-PSP compare
Psyr_1881 +0.5 1.3 conserved hypothetical protein compare
Psyr_0165 +0.5 1.5 GCN5-related N-acetyltransferase compare
Psyr_4157 +0.5 2.7 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_3156 +0.5 1.9 transcriptional regulator, LysR family compare
Psyr_0670 +0.5 1.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_0502 +0.5 2.7 potassium/proton antiporter, CPA1 family compare
Psyr_2121 +0.5 1.8 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_4596 +0.5 1.0 conserved hypothetical protein compare
Psyr_4978 +0.5 1.4 hypothetical protein compare
Psyr_4573 +0.5 3.0 Histidine triad (HIT) protein compare
Psyr_2112 +0.5 1.3 Protein with unknown function DUF469 compare
Psyr_1318 +0.5 2.3 Phosphoenolpyruvate carboxylase compare
Psyr_2550 +0.5 1.8 hypothetical protein compare
Psyr_2049 +0.5 1.0 K+ transporting ATPase, KdpC subunit compare
Psyr_1691 +0.5 2.0 hypothetical protein compare
Psyr_1867 +0.5 2.0 conserved hypothetical protein compare
Psyr_0392 +0.5 1.7 hypothetical protein compare
Psyr_0491 +0.5 1.2 chemotaxis sensory transducer compare
Psyr_0550 +0.5 1.3 Protein of unknown function UPF0227 compare
Psyr_2495 +0.5 2.0 ABC transporter compare
Psyr_4171 +0.5 3.0 Twin-arginine translocation pathway signal compare
Psyr_3562 +0.5 1.4 succinylglutamic semialdehyde dehydrogenase compare
Psyr_5029 +0.4 0.5 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_1813 +0.4 2.2 molybdenum cofactor sulfurylase compare
Psyr_4168 +0.4 2.0 K+-dependent Na+/Ca+ exchanger related-protein compare
Psyr_0516 +0.4 2.4 ATP-dependent RNA helicase DbpA compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Ginkgolide A across organisms