Experiment set9IT088 for Ralstonia sp. UNC404CL21Col

Compare to:

Heptanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS00205 -6.9 -4.7 DUF934 domain-containing protein compare
ABZR87_RS17310 -6.5 -4.5 PadR family transcriptional regulator compare
ABZR87_RS14950 -6.5 -4.5 acetolactate synthase small subunit compare
ABZR87_RS13250 -6.3 -4.4 phosphoserine phosphatase SerB compare
ABZR87_RS07360 -6.2 -11.2 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14535 -6.1 -6.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS00190 -6.1 -6.0 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS21795 -6.0 -8.2 NUDIX domain-containing protein compare
ABZR87_RS02160 -5.9 -5.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16740 -5.9 -4.1 2-methylcitrate synthase compare
ABZR87_RS14540 -5.9 -5.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS16735 -5.9 -20.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS16660 -5.9 -8.0 helix-turn-helix domain-containing protein compare
ABZR87_RS02570 -5.9 -19.5 glutamate synthase-related protein compare
ABZR87_RS14500 -5.8 -13.5 tryptophan synthase subunit beta compare
ABZR87_RS16730 -5.7 -6.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS17145 -5.6 -16.8 AMP nucleosidase compare
ABZR87_RS00200 -5.6 -5.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS14490 -5.5 -7.5 tryptophan synthase subunit alpha compare
ABZR87_RS06770 -5.5 -5.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS05200 -5.5 -19.1 homoserine O-acetyltransferase compare
ABZR87_RS02595 -5.5 -11.1 shikimate kinase compare
ABZR87_RS02155 -5.4 -9.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS16140 -5.4 -14.9 phosphoenolpyruvate carboxylase compare
ABZR87_RS14530 -5.4 -8.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS13285 -5.4 -13.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01810 -5.3 -3.7 glutamate 5-kinase compare
ABZR87_RS00210 -5.3 -7.3 nitrite/sulfite reductase compare
ABZR87_RS14505 -5.3 -6.2 phosphoribosylanthranilate isomerase compare
ABZR87_RS20880 -5.3 -8.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS13790 -5.2 -9.3 chorismate synthase compare
ABZR87_RS01110 -5.2 -9.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02140 -5.1 -19.4 anthranilate synthase component I compare
ABZR87_RS09465 -5.1 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02145 -5.0 -3.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS05305 -5.0 -13.3 TetR family transcriptional regulator compare
ABZR87_RS11440 -5.0 -8.3 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09710 -5.0 -4.8 tRNA-Arg compare
ABZR87_RS20875 -5.0 -10.0 LysR family transcriptional regulator compare
ABZR87_RS22970 -5.0 -12.3 cystathionine gamma-synthase family protein compare
ABZR87_RS00220 -4.9 -14.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS04785 -4.9 -12.7 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS11925 -4.9 -17.0 phosphoenolpyruvate synthase compare
ABZR87_RS02550 -4.9 -4.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS07060 -4.9 -18.1 RNA polymerase factor sigma-54 compare
ABZR87_RS02640 -4.9 -14.2 diaminopimelate decarboxylase compare
ABZR87_RS09445 -4.9 -16.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02565 -4.8 -7.4 glutamate synthase subunit beta compare
ABZR87_RS08630 -4.8 -9.7 dihydroorotase compare
ABZR87_RS16170 -4.8 -5.6 argininosuccinate lyase compare
ABZR87_RS02655 -4.7 -12.5 anti-sigma factor compare
ABZR87_RS09935 -4.6 -3.2 amino acid aminotransferase compare
ABZR87_RS00185 -4.6 -3.2 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00350 -4.5 -7.1 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS02540 -4.5 -7.5 VacJ family lipoprotein compare
ABZR87_RS01645 -4.5 -6.1 type II 3-dehydroquinate dehydratase compare
ABZR87_RS02385 -4.5 -7.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02020 -4.4 -17.1 long-chain fatty acid--CoA ligase compare
ABZR87_RS11195 -4.4 -14.8 pseudouridine synthase compare
ABZR87_RS11435 -4.4 -5.2 Mth938-like domain-containing protein compare
ABZR87_RS02545 -4.4 -9.8 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS00435 -4.4 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS04975 -4.4 -4.3 peptide deformylase compare
ABZR87_RS05100 -4.4 -7.9 RNA polymerase-binding protein DksA compare
ABZR87_RS14380 -4.4 -9.6 glutamate racemase compare
ABZR87_RS07380 -4.4 -14.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS08660 -4.3 -7.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS16745 -4.3 -10.3 methylisocitrate lyase compare
ABZR87_RS10565 -4.3 -2.9 cupin domain-containing protein compare
ABZR87_RS05350 -4.3 -6.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00835 -4.2 -6.5 argininosuccinate synthase compare
ABZR87_RS06845 -4.2 -12.6 heme o synthase compare
ABZR87_RS04865 -4.2 -4.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02590 -4.1 -11.8 3-dehydroquinate synthase compare
ABZR87_RS02535 -4.1 -8.7 phospholipid-binding protein MlaC compare
ABZR87_RS06705 -4.1 -14.7 glutamate--cysteine ligase compare
ABZR87_RS01615 -4.1 -1.8 RNB domain-containing ribonuclease compare
ABZR87_RS19010 -4.0 -3.9 acyloxyacyl hydrolase compare
ABZR87_RS02380 -4.0 -17.8 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS14955 -4.0 -7.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00355 -4.0 -13.9 quinolinate synthase NadA compare
ABZR87_RS02680 -4.0 -16.8 c-type cytochrome compare
ABZR87_RS02375 -4.0 -15.0 cytochrome c1 compare
ABZR87_RS05170 -4.0 -5.4 acetylglutamate kinase compare
ABZR87_RS06710 -4.0 -18.8 glutathione synthase compare
ABZR87_RS05635 -3.9 -22.9 muropeptide transporter compare
ABZR87_RS04125 -3.9 -8.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS06800 -3.9 -20.9 cytochrome c oxidase subunit I compare
ABZR87_RS06810 -3.8 -8.5 cytochrome c oxidase assembly protein compare
ABZR87_RS10120 -3.8 -3.2 YceD family protein compare
ABZR87_RS00285 -3.8 -3.7 acetylornithine transaminase compare
ABZR87_RS15440 -3.8 -2.6 ribonuclease G compare
ABZR87_RS11940 -3.7 -5.0 SsrA-binding protein SmpB compare
ABZR87_RS06385 -3.7 -14.1 CHASE3 domain-containing protein compare
ABZR87_RS02555 -3.6 -10.9 ABC transporter ATP-binding protein compare
ABZR87_RS06400 -3.6 -9.7 response regulator transcription factor compare
ABZR87_RS06715 -3.6 -5.4 PTS sugar transporter subunit IIA compare
ABZR87_RS09635 -3.6 -2.4 ribosome small subunit-dependent GTPase A compare
ABZR87_RS03075 -3.6 -14.3 AGE family epimerase/isomerase compare
ABZR87_RS05590 -3.6 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS11125 -3.6 -8.2 cell division protein ZapE compare
ABZR87_RS09500 -3.6 -8.2 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS02630 -3.6 -5.9 iron donor protein CyaY compare
ABZR87_RS11390 -3.5 -15.8 PhoH family protein compare
ABZR87_RS10175 -3.5 -6.7 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS08625 -3.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02440 -3.5 -12.7 twin-arginine translocase subunit TatC compare
ABZR87_RS13300 -3.5 -11.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS10240 -3.5 -2.4 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS06840 -3.5 -9.8 COX15/CtaA family protein compare
ABZR87_RS04995 -3.4 -3.3 DNA topoisomerase III compare
ABZR87_RS16250 -3.4 -4.0 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS10170 -3.3 -6.6 RseA family anti-sigma factor compare
ABZR87_RS01745 -3.3 -4.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS00325 -3.3 -3.1 peptidylprolyl isomerase compare
ABZR87_RS11245 -3.3 -7.8 translational GTPase TypA compare
ABZR87_RS15685 -3.3 -9.0 TIGR00730 family Rossman fold protein compare
ABZR87_RS00195 -3.2 -4.3 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS04940 -3.2 -4.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS16080 -3.2 -5.1 P-II family nitrogen regulator compare
ABZR87_RS00875 -3.2 -7.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS10610 -3.2 -3.0 inositol monophosphatase family protein compare
ABZR87_RS09450 -3.2 -7.3 prephenate dehydratase compare
ABZR87_RS17650 -3.2 -10.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16960 -3.1 -5.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS12790 -3.1 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS08655 -3.1 -4.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS16185 -3.1 -3.6 dCTP deaminase compare
ABZR87_RS05000 -3.1 -18.9 LysR family transcriptional regulator compare
ABZR87_RS09615 -3.1 -2.0 50S ribosomal protein L19 compare
ABZR87_RS11815 -3.0 -9.5 [protein-PII] uridylyltransferase compare
ABZR87_RS02445 -3.0 -7.2 Sec-independent protein translocase protein TatB compare
ABZR87_RS10400 -3.0 -5.6 hypothetical protein compare
ABZR87_RS06745 -3.0 -4.9 S41 family peptidase compare
ABZR87_RS06795 -2.9 -14.5 cytochrome c oxidase subunit II compare
ABZR87_RS08110 -2.9 -13.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
ABZR87_RS06645 -2.9 -2.8 TlpA disulfide reductase family protein compare
ABZR87_RS08750 -2.9 -4.5 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS15255 -2.9 -8.1 ribonuclease PH compare
ABZR87_RS07050 -2.8 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16180 -2.8 -7.3 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS12785 -2.8 -1.9 endopeptidase La compare
ABZR87_RS01675 -2.8 -2.7 carbohydrate kinase family protein compare
ABZR87_RS11010 -2.8 -4.1 oxidative damage protection protein compare
ABZR87_RS10780 -2.7 -7.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS06835 -2.6 -8.2 cytochrome c oxidase subunit I compare
ABZR87_RS00345 -2.6 -14.6 L-aspartate oxidase compare
ABZR87_RS01640 -2.6 -4.5 TlpA disulfide reductase family protein compare
ABZR87_RS06820 -2.6 -9.4 cytochrome c oxidase subunit 3 compare
ABZR87_RS14495 -2.6 -7.3 site-specific DNA-methyltransferase compare
ABZR87_RS00215 -2.6 -4.8 sulfite exporter TauE/SafE family protein compare
ABZR87_RS21940 -2.6 -1.5 hypothetical protein compare
ABZR87_RS01035 -2.6 -7.4 histidine utilization repressor compare
ABZR87_RS03565 -2.6 -10.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS17315 -2.5 -4.4 MarR family transcriptional regulator compare
ABZR87_RS00935 -2.5 -11.7 polynucleotide adenylyltransferase PcnB compare
ABZR87_RS11015 -2.5 -10.1 amino-acid N-acetyltransferase compare
ABZR87_RS14115 -2.5 -2.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS11760 -2.4 -1.4 membrane protein compare
ABZR87_RS18910 -2.4 -3.6 DUF2239 family protein compare
ABZR87_RS04295 -2.4 -5.3 HU family DNA-binding protein compare
ABZR87_RS02480 -2.4 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS21285 -2.4 -3.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07735 -2.4 -4.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS07635 -2.4 -4.1 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08775 -2.4 -12.7 protein-L-isoaspartate O-methyltransferase compare
ABZR87_RS14510 -2.4 -5.5 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS13315 -2.3 -10.5 RluA family pseudouridine synthase compare
ABZR87_RS14890 -2.2 -1.8 preprotein translocase subunit SecG compare
ABZR87_RS09200 -2.2 -15.4 long-chain fatty acid--CoA ligase compare
ABZR87_RS09555 -2.2 -10.8 acyl-CoA dehydrogenase compare
ABZR87_RS00605 -2.2 -9.3 hypothetical protein compare
ABZR87_RS14575 -2.1 -6.4 GntR family transcriptional regulator compare
ABZR87_RS12345 -2.1 -1.7 dethiobiotin synthase compare
ABZR87_RS14375 -2.1 -4.1 fumarate hydratase compare
ABZR87_RS06495 -2.1 -2.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS07625 -2.1 -4.7 Holliday junction branch migration protein RuvA compare
ABZR87_RS17215 -2.1 -7.7 1,4-alpha-glucan branching protein GlgB compare
ABZR87_RS10785 -2.1 -6.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS06955 -2.1 -11.9 pitrilysin family protein compare
ABZR87_RS05060 -2.1 -5.4 DUF484 family protein compare
ABZR87_RS06950 -2.0 -11.1 pitrilysin family protein compare
ABZR87_RS12795 -2.0 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS10870 -2.0 -8.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS11625 -2.0 -10.1 malate synthase A compare
ABZR87_RS16750 -2.0 -5.6 propionate catabolism operon regulatory protein PrpR compare
ABZR87_RS01055 -2.0 -8.9 heat-inducible transcriptional repressor HrcA compare
ABZR87_RS09945 -2.0 -8.9 recombinase compare
ABZR87_RS20665 -2.0 -3.7 IclR family transcriptional regulator compare
ABZR87_RS07700 -2.0 -2.8 peptidylprolyl isomerase compare
ABZR87_RS15665 -1.9 -7.9 ZIP family metal transporter compare
ABZR87_RS16125 -1.9 -6.1 heme biosynthesis protein HemY compare
ABZR87_RS07475 -1.9 -13.0 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABZR87_RS08650 -1.9 -11.1 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS10800 -1.9 -3.9 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS13290 -1.9 -5.9 3-ketoacyl-ACP reductase compare
ABZR87_RS06830 -1.8 -8.6 SURF1 family protein compare
ABZR87_RS11235 -1.8 -10.3 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
ABZR87_RS04880 -1.8 -9.7 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS08680 -1.8 -8.0 glycosyltransferase compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source Heptanoic acid in Ralstonia sp. UNC404CL21Col

For carbon source Heptanoic acid across organisms