Experiment set9IT087 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Ionizing radiation, 126.196 Gy, replicate 1

200 most important genes:

  gene name fitness t score description  
AO353_16805 -2.7 -4.7 recombinase RecA compare
AO353_14795 -2.6 -5.5 molybdopterin-synthase adenylyltransferase compare
AO353_09320 -2.6 -9.5 ATP-dependent DNA helicase RecG compare
AO353_09050 -2.5 -4.6 recombinase XerC compare
AO353_08215 -2.5 -4.7 thiazole synthase compare
AO353_12500 -2.5 -2.3 shikimate kinase compare
AO353_05660 -2.3 -9.5 DNA repair protein RecN compare
AO353_04565 -2.2 -6.0 nucleoid-associated protein compare
AO353_03585 -2.0 -3.1 ATP-dependent DNA helicase RuvA compare
AO353_03580 -1.9 -1.8 ATP-dependent DNA helicase RuvB compare
AO353_06350 -1.8 -7.4 hydrogenase compare
AO353_13100 -1.8 -2.2 GTPase RsgA compare
AO353_18745 -1.8 -2.1 flagellar biosynthesis protein flip compare
AO353_15900 -1.8 -2.8 GTP-binding protein compare
AO353_05130 -1.8 -1.9 anti-anti-sigma factor compare
AO353_03590 -1.7 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_16530 -1.7 -2.3 ribonuclease HII compare
AO353_00495 -1.7 -1.4 DNA topoisomerase I compare
AO353_17650 -1.6 -4.7 response regulator SirA compare
AO353_11945 -1.6 -2.2 4-oxalocrotonate tautomerase compare
AO353_11750 -1.6 -1.8 ATPase compare
AO353_11770 -1.6 -2.5 molecular chaperone Hsp33 compare
AO353_17640 -1.6 -2.1 serine peptidase compare
AO353_09890 -1.5 -4.8 phosphate ABC transporter ATP-binding protein compare
AO353_12345 -1.5 -2.7 twin-arginine protein translocation system subunit TatC compare
AO353_04190 -1.5 -2.0 glycerol-3-phosphate dehydrogenase compare
AO353_20175 -1.5 -2.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_07075 -1.5 -4.4 elongation factor Tu compare
AO353_13130 -1.5 -2.7 N-acetylmuramoyl-L-alanine amidase compare
AO353_10930 -1.4 -6.7 DNA polymerase I compare
AO353_07315 -1.4 -1.7 rRNA methyltransferase compare
AO353_09250 -1.4 -2.8 exodeoxyribonuclease III compare
AO353_14495 -1.4 -6.3 acetolactate synthase 3 catalytic subunit compare
AO353_14775 -1.4 -4.4 hypothetical protein compare
AO353_14940 -1.3 -3.0 malate:quinone oxidoreductase compare
AO353_12105 -1.3 -3.9 peptidase S41 compare
AO353_06355 -1.3 -2.7 thiamine-phosphate pyrophosphorylase compare
AO353_24260 -1.3 -2.0 hypothetical protein compare
AO353_02020 -1.3 -3.2 hypothetical protein compare
AO353_20545 -1.3 -9.5 excinuclease ABC subunit B conserved
AO353_06855 -1.2 -10.0 ABC-ATPase UvrA conserved
AO353_03660 -1.2 -3.5 hypothetical protein compare
AO353_02520 -1.2 -2.4 sodium transporter compare
AO353_07295 -1.2 -9.5 aminoglycoside phosphotransferase compare
AO353_14220 -1.2 -1.0 ribosomal large subunit pseudouridine synthase D compare
AO353_05150 -1.2 -2.8 ABC transporter ATP-binding protein compare
AO353_16495 -1.2 -5.1 zinc metallopeptidase RseP compare
AO353_20185 -1.2 -3.6 DNA-binding protein compare
AO353_22150 -1.2 -2.3 iron transporter compare
AO353_09745 -1.2 -2.0 hypothetical protein compare
AO353_00455 -1.2 -3.1 beta-hexosaminidase compare
AO353_06045 -1.2 -4.0 exodeoxyribonuclease V subunit beta compare
AO353_08470 -1.2 -4.0 RNA pyrophosphohydrolase compare
AO353_21835 -1.1 -5.9 excinuclease ABC subunit C conserved
AO353_13980 -1.1 -4.9 DNA repair protein RadA compare
AO353_15250 -1.1 -2.3 cytochrome B compare
AO353_08265 -1.1 -3.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_20680 -1.1 -3.2 cell division protein compare
AO353_15730 -1.1 -1.7 hypothetical protein compare
AO353_12650 -1.1 -1.6 hypothetical protein compare
AO353_17625 -1.1 -6.3 RNA polymerase subunit sigma compare
AO353_20800 -1.1 -1.6 hypothetical protein compare
AO353_08245 -1.1 -2.7 cell division ATP-binding protein FtsE compare
AO353_06040 -1.0 -1.0 exodeoxyribonuclease V subunit alpha compare
AO353_16375 -1.0 -1.7 hypothetical protein compare
AO353_03795 -1.0 -3.2 fumarate hydratase compare
AO353_04365 -1.0 -3.3 recombinase XerD compare
AO353_10055 -1.0 -6.5 DNA helicase II compare
AO353_16810 -1.0 -2.5 recombinase RecX compare
AO353_26100 -1.0 -1.9 lysozyme compare
AO353_05550 -1.0 -4.4 pseudouridine synthase compare
AO353_09060 -1.0 -2.1 hypothetical protein compare
AO353_02710 -1.0 -5.0 (p)ppGpp synthetase compare
AO353_13200 -1.0 -6.2 exoribonuclease R compare
AO353_26285 -1.0 -1.7 hypothetical protein compare
AO353_16925 -1.0 -8.3 AmpG family muropeptide MFS transporter compare
AO353_19770 -1.0 -1.5 peptidase compare
AO353_09785 -1.0 -2.3 hypothetical protein compare
AO353_08345 -0.9 -5.1 dihydroxy-acid dehydratase compare
AO353_14505 -0.9 -6.4 ketol-acid reductoisomerase compare
AO353_14395 -0.9 -2.6 poly(A) polymerase compare
AO353_02005 -0.9 -1.1 hypothetical protein compare
AO353_08080 -0.9 -3.3 chemotaxis protein compare
AO353_26165 -0.9 -2.8 hypothetical protein compare
AO353_13140 -0.9 -3.3 tRNA dimethylallyltransferase compare
AO353_11775 -0.9 -4.9 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07145 -0.9 -6.5 anhydro-N-acetylmuramic acid kinase compare
AO353_00260 -0.9 -2.0 hypothetical protein compare
AO353_17645 -0.9 -5.5 peptidase M48 compare
AO353_24275 -0.9 -2.1 transcriptional regulator compare
AO353_10455 -0.9 -1.2 tRNA modification GTPase MnmE compare
AO353_22025 -0.9 -1.6 iron-sulfur cluster repair di-iron protein compare
AO353_19310 -0.9 -1.8 enoyl-CoA hydratase compare
AO353_18715 -0.9 -1.3 histidine kinase compare
AO353_12110 -0.9 -4.3 peptidase M23 compare
AO353_23450 -0.9 -2.1 LysR family transcriptional regulator compare
AO353_20200 -0.9 -2.4 peptidylprolyl isomerase compare
AO353_14500 -0.8 -3.6 acetolactate synthase 3 regulatory subunit compare
AO353_12115 -0.8 -0.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_22110 -0.8 -2.9 nitrate reductase compare
AO353_19360 -0.8 -1.4 peroxiredoxin compare
AO353_08015 -0.8 -3.9 5,10-methylenetetrahydrofolate reductase compare
AO353_12940 -0.8 -3.1 glycosyl transferase compare
AO353_10705 -0.8 -2.6 tryptophan synthase subunit alpha compare
AO353_13610 -0.8 -2.8 precorrin isomerase compare
AO353_13640 -0.8 -2.5 histidine kinase compare
AO353_23155 -0.8 -2.4 IclR family transcriptional regulator compare
AO353_09915 -0.8 -5.5 long-chain acyl-CoA thioester hydrolase compare
AO353_16710 -0.8 -1.7 hypothetical protein compare
AO353_26195 -0.8 -1.9 hypothetical protein compare
AO353_19390 -0.8 -3.3 glyoxalase compare
AO353_04660 -0.8 -3.5 molybdenum cofactor biosynthesis protein MoaC compare
AO353_13155 -0.8 -2.0 hypothetical protein compare
AO353_02010 -0.8 -2.4 glycosyl transferase family 1 compare
AO353_03715 -0.8 -1.7 H-NS histone compare
AO353_00505 -0.8 -2.2 3-ketoacyl-CoA thiolase compare
AO353_27650 -0.8 -1.7 cell division protein FtsK compare
AO353_24625 -0.8 -1.8 hypothetical protein compare
AO353_07210 -0.8 -3.1 indole-3-glycerol-phosphate synthase compare
AO353_12880 -0.8 -1.8 ADP-heptose--LPS heptosyltransferase compare
AO353_21655 -0.8 -2.1 cobalamin biosynthesis protein CobW compare
AO353_07290 -0.8 -4.8 mannose-1-phosphate guanylyltransferase compare
AO353_20790 -0.8 -2.2 penicillin-binding protein activator LpoB compare
AO353_25845 -0.7 -1.8 GNAT family acetyltransferase compare
AO353_12930 -0.7 -1.8 GlcNAc-PI de-N-acetylase compare
AO353_21530 -0.7 -2.5 type VI secretion protein compare
AO353_09275 -0.7 -1.7 DNA-directed RNA polymerase subunit omega compare
AO353_05415 -0.7 -1.6 hypothetical protein compare
AO353_21990 -0.7 -2.4 cytochrome C compare
AO353_15270 -0.7 -3.0 phospholipid-binding protein compare
AO353_22280 -0.7 -1.1 hypothetical protein compare
AO353_04970 -0.7 -1.6 cell division protein DedD compare
AO353_25870 -0.7 -2.0 peptide ABC transporter ATP-binding protein compare
AO353_05510 -0.7 -4.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_23985 -0.7 -2.7 isochorismate-pyruvate lyase compare
AO353_21420 -0.7 -2.6 hypothetical protein compare
AO353_00610 -0.7 -0.9 cytochrome C oxidase Cbb3 compare
AO353_03275 -0.7 -1.5 LysR family transcriptional regulator compare
AO353_19060 -0.7 -2.4 CysB family transcriptional regulator compare
AO353_23720 -0.7 -2.0 BatB protein compare
AO353_10630 -0.7 -2.7 16S rRNA methyltransferase compare
AO353_05620 -0.7 -2.7 MFS transporter compare
AO353_18320 -0.7 -2.5 hypothetical protein compare
AO353_10430 -0.7 -1.8 chromosome partitioning protein ParB compare
AO353_23725 -0.7 -2.1 hypothetical protein compare
AO353_21175 -0.7 -1.5 hypothetical protein compare
AO353_08350 -0.7 -3.7 hypothetical protein compare
AO353_26865 -0.7 -1.8 transcriptional regulator compare
AO353_02685 -0.7 -2.3 phosphoribosylglycinamide formyltransferase compare
AO353_24600 -0.7 -1.9 hypothetical protein compare
AO353_25955 -0.7 -1.9 NIPSNAP family containing protein compare
AO353_26310 -0.7 -2.5 hypothetical protein compare
AO353_16195 -0.7 -1.3 DNA mismatch repair protein MutT compare
AO353_01690 -0.7 -2.7 hypothetical protein compare
AO353_16940 -0.7 -2.4 deoxycytidine triphosphate deaminase compare
AO353_18120 -0.7 -1.6 hypothetical protein compare
AO353_20910 -0.7 -2.4 MerR family transcriptional regulator compare
AO353_19280 -0.7 -1.3 hypothetical protein compare
AO353_27665 -0.7 -3.8 arginyl-tRNA-protein transferase compare
AO353_13715 -0.7 -1.9 translation initiation factor Sui1 compare
AO353_13635 -0.6 -3.0 hypothetical protein compare
AO353_03710 -0.6 -1.3 formyltetrahydrofolate deformylase compare
AO353_00860 -0.6 -2.2 EstX protein compare
AO353_20565 -0.6 -0.5 tRNA-Ala compare
AO353_21760 -0.6 -2.9 twitching motility protein PilT compare
AO353_26430 -0.6 -2.3 hypothetical protein compare
AO353_12060 -0.6 -2.7 acetyltransferase compare
AO353_23945 -0.6 -1.4 hypothetical protein compare
AO353_22800 -0.6 -1.4 sulfite reductase compare
AO353_14085 -0.6 -2.1 hypothetical protein compare
AO353_15775 -0.6 -3.0 hypothetical protein compare
AO353_02720 -0.6 -2.7 cysteine synthase compare
AO353_13395 -0.6 -1.9 protein hupE compare
AO353_27365 -0.6 -1.7 hypothetical protein compare
AO353_27155 -0.6 -1.3 hypothetical protein compare
AO353_18600 -0.6 -2.2 flagellar basal-body rod protein FlgG compare
AO353_09540 -0.6 -3.4 type VI secretion system protein ImpM compare
AO353_00510 -0.6 -1.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_02440 -0.6 -3.8 peptidase S41 compare
AO353_18485 -0.6 -2.1 nitroreductase compare
AO353_17750 -0.6 -1.6 transcriptional regulator compare
AO353_18005 -0.6 -2.9 allophanate hydrolase compare
AO353_28935 -0.6 -1.1 ATPase compare
AO353_01770 -0.6 -2.5 pirin compare
AO353_14475 -0.6 -5.0 penicillin-binding protein 1B compare
AO353_02040 -0.6 -1.5 integration host factor subunit beta compare
AO353_25060 -0.6 -2.6 LysR family transcriptional regulator compare
AO353_02690 -0.6 -4.3 dehydrogenase compare
AO353_16915 -0.6 -4.1 hypothetical protein compare
AO353_23350 -0.6 -1.2 hypothetical protein compare
AO353_28425 -0.6 -1.6 TetR family transcriptional regulator compare
AO353_14370 -0.6 -2.6 glucose-6-phosphate isomerase compare
AO353_05195 -0.6 -4.3 glmZ(sRNA)-inactivating NTPase compare
AO353_09500 -0.6 -3.0 hypothetical protein compare
AO353_28985 -0.6 -2.0 hypothetical protein compare
AO353_23790 -0.6 -1.6 metal-binding protein compare
AO353_26450 -0.6 -2.2 hypothetical protein compare
AO353_10500 -0.6 -2.0 acetylornithine aminotransferase compare
AO353_27380 -0.6 -1.1 pyocin R2, holin compare
AO353_05135 -0.6 -2.1 toluene tolerance protein compare


Specific Phenotypes

For 5 genes in this experiment

For radiation Ionizing radiation in Pseudomonas fluorescens FW300-N2E3

For radiation Ionizing radiation across organisms