Experiment set9IT086 for Ralstonia solanacearum GMI1000

Compare to:

water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

200 most important genes:

  gene name fitness t score description  
RS_RS08265 -6.2 -3.5 phosphoserine phosphatase SerB compare
RS_RS18175 -5.5 -20.1 AMP nucleosidase compare
RS_RS10065 -5.2 -11.7 aconitate hydratase AcnA compare
RS_RS07295 -5.1 -4.8 7-carboxy-7-deazaguanine synthase compare
RS_RS01360 -4.3 -5.0 carbonate dehydratase compare
RS_RS13750 -4.1 -8.2 transcriptional regulator compare
RS_RS02015 -4.0 -5.7 ribosomal subunit interface protein compare
RS_RS11770 -3.8 -3.7 nitrogen regulatory protein P-II 1 compare
RS_RS02605 -3.7 -4.2 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
RS_RS12150 -3.2 -7.1 sulfate adenylyltransferase subunit 1 compare
RS_RS03715 -3.2 -6.6 7-cyano-7-deazaguanine synthase compare
RS_RS01735 -3.2 -1.3 S41 family peptidase compare
RS_RS03865 -3.1 -5.0 Pyridoxine/pyridoxamine 5'-phosphate oxidase 1 compare
RS_RS16070 -3.0 -9.5 TetR/AcrR family transcriptional regulator compare
RS_RS04875 -2.9 -3.3 PLP-dependent aminotransferase family protein compare
RS_RS09975 -2.8 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
RS_RS10040 -2.8 -4.0 malate dehydrogenase compare
RS_RS07885 -2.7 -1.8 chorismate synthase compare
RS_RS08220 -2.6 -1.8 class I poly(R)-hydroxyalkanoic acid synthase compare
RS_RS12155 -2.5 -5.0 sulfate adenylyltransferase subunit CysD compare
RS_RS00385 -2.5 -1.6 PAS domain-containing sensor histidine kinase compare
RS_RS14670 -2.4 -11.0 cytochrome b compare
RS_RS06760 -2.4 -3.3 CysB family HTH-type transcriptional regulator compare
RS_RS22435 -2.4 -6.6 UDP-glucose 4-epimerase GalE compare
RS_RS12160 -2.4 -1.7 phosphoadenylyl-sulfate reductase compare
RS_RS13435 -2.2 -6.3 YggS family pyridoxal phosphate-dependent enzyme compare
RS_RS02220 -2.2 -3.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
RS_RS13575 -2.2 -4.0 tRNA guanosine(34) transglycosylase Tgt compare
RS_RS14840 -2.2 -4.7 ABC transporter permease compare
RS_RS13165 -2.1 -6.5 polynucleotide adenylyltransferase PcnB compare
RS_RS08045 -2.1 -2.7 DNA-binding response regulator compare
RS_RS22170 -2.1 -5.0 EamA/RhaT family transporter compare
RS_RS01705 -2.0 -2.4 PTS fructose transporter subunit IIA compare
RS_RS14970 -2.0 -5.0 cytochrome c4 compare
RS_RS05700 -2.0 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
RS_RS12170 -2.0 -5.5 nitrite/sulfite reductase compare
RS_RS14445 -2.0 -1.2 Anthranilate phosphoribosyltransferase 1 compare
RS_RS13280 -2.0 -1.8 hypothetical protein compare
RS_RS11750 -1.9 -2.9 DNA translocase FtsK compare
RS_RS10060 -1.9 -5.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
RS_RS04490 -1.9 -9.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
RS_RS23150 -1.8 -1.8 hypothetical protein compare
RS_RS14430 -1.8 -9.0 anthranilate synthase component I compare
RS_RS14605 -1.8 -5.9 cytochrome o ubiquinol oxidase subunit I compare
RS_RS22020 -1.8 -6.5 EPS I polysaccharide export inner membrane protein EpsE compare
RS_RS10430 -1.8 -4.2 DUF3619 domain-containing protein compare
RS_RS00845 -1.8 -2.1 short-chain dehydrogenase compare
RS_RS14675 -1.8 -5.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
RS_RS09955 -1.7 -0.6 tryptophan synthase subunit alpha compare
RS_RS04510 -1.7 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
RS_RS08665 -1.7 -2.4 tRNA-Val compare
RS_RS06375 -1.7 -3.4 cell division protein ZapE compare
RS_RS10055 -1.7 -3.0 hypothetical protein compare
RS_RS08050 -1.6 -6.5 PAS domain-containing sensor histidine kinase compare
RS_RS10075 -1.6 -5.4 DUF2863 domain-containing protein compare
RS_RS10425 -1.6 -1.8 RNA polymerase sigma factor compare
RS_RS11230 -1.6 -3.0 UTP--glucose-1-phosphate uridylyltransferase compare
RS_RS14365 -1.6 -1.3 23S ribosomal RNA compare
RS_RS13320 -1.6 -5.1 3-deoxy-7-phosphoheptulonate synthase compare
RS_RS11780 -1.6 -6.1 NAD+ synthase compare
RS_RS02250 -1.6 -11.1 FAD-linked oxidase compare
RS_RS08150 -1.6 -1.5 tRNA-Met compare
RS_RS00835 -1.5 -2.3 oxidoreductase compare
RS_RS14665 -1.5 -4.2 cytochrome c compare
RS_RS14895 -1.5 -1.3 pilus assembly protein PilP compare
RS_RS22410 -1.5 -8.6 helix-turn-helix transcriptional regulator compare
RS_RS02380 -1.4 -2.5 Glu/Leu/Phe/Val dehydrogenase compare
RS_RS02860 -1.4 -1.0 phosphoglycerate kinase compare
RS_RS01620 -1.4 -1.5 ferredoxin compare
RS_RS05660 -1.4 -0.5 DUF4166 domain-containing protein compare
RS_RS14735 -1.4 -0.7 twin-arginine translocase subunit TatB compare
RS_RS15365 -1.4 -4.4 AGE family epimerase/isomerase compare
RS_RS03495 -1.4 -3.0 channel protein TolC compare
RS_RS13050 -1.4 -1.8 DUF2840 domain-containing protein compare
RS_RS02870 -1.4 -1.2 fructose-bisphosphate aldolase class II compare
RS_RS01995 -1.3 -2.8 RNase adaptor protein RapZ compare
RS_RS09830 -1.3 -2.5 fumarate hydratase compare
RS_RS12145 -1.3 -2.7 uroporphyrinogen-III C-methyltransferase compare
RS_RS14570 -1.3 -2.3 glucan biosynthesis protein H compare
RS_RS04550 -1.3 -2.8 ADP-L-glycero-D-mannoheptose-6-epimerase compare
RS_RS25930 -1.3 -1.7 hypothetical protein compare
RS_RS13570 -1.3 -3.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
RS_RS12830 -1.3 -4.8 membrane protein compare
RS_RS11005 -1.3 -3.8 nicotinate-nucleotide adenylyltransferase compare
RS_RS21980 -1.3 -5.6 acetyltransferase compare
RS_RS00850 -1.2 -2.8 FAD-binding oxidoreductase compare
RS_RS14565 -1.2 -2.8 glucan biosynthesis protein D compare
RS_RS07690 -1.2 -5.4 phosphate transport system regulatory protein PhoU compare
RS_RS10000 -1.2 -1.4 3-isopropylmalate dehydratase large subunit compare
RS_RS23320 -1.2 -3.4 class II fumarate hydratase compare
RS_RS09990 -1.2 -1.3 3-isopropylmalate dehydrogenase compare
RS_RS13925 -1.2 -2.9 alkyl hydroperoxide reductase compare
RS_RS26320 -1.2 -1.8 DUF1911 domain-containing protein compare
RS_RS24160 -1.2 -1.4 hypothetical protein compare
RS_RS22870 -1.2 -1.6 permease compare
RS_RS02850 -1.2 -0.9 AzlD domain-containing protein compare
RS_RS08205 -1.2 -1.7 RluA family pseudouridine synthase compare
RS_RS04485 -1.2 -1.6 DUF2059 domain-containing protein compare
RS_RS23350 -1.2 -1.4 PTS sugar transporter compare
RS_RS04995 -1.2 -1.9 IS5 family transposase compare
RS_RS01435 -1.2 -4.8 DNA-binding response regulator compare
RS_RS18420 -1.1 -7.3 glucan biosynthesis protein D compare
RS_RS02695 -1.1 -3.2 RNA helicase compare
RS_RS25790 -1.1 -1.4 hypothetical protein compare
RS_RS02515 -1.1 -1.8 tRNA dihydrouridine synthase DusB compare
RS_RS14835 -1.1 -8.2 outer membrane lipid asymmetry maintenance protein MlaD compare
RS_RS16775 -1.1 -3.5 copper-translocating P-type ATPase compare
RS_RS18335 -1.1 -6.5 peroxiredoxin compare
RS_RS22160 -1.1 -3.2 DNA-binding response regulator compare
RS_RS06750 -1.1 -2.8 sulfate ABC transporter permease subunit CysW compare
RS_RS09080 -1.1 -0.9 2-oxo acid dehydrogenase subunit E2 compare
RS_RS06680 -1.1 -1.0 molybdopterin synthase catalytic subunit compare
RS_RS06315 -1.1 -1.4 PAS domain-containing sensor histidine kinase compare
RS_RS17205 -1.0 -0.5 cold-shock protein compare
RS_RS13260 -1.0 -2.8 histidine utilization repressor compare
RS_RS16500 -1.0 -4.0 aminomethyltransferase compare
RS_RS12120 -1.0 -2.6 cytosol aminopeptidase compare
RS_RS06120 -1.0 -2.3 FtsH protease activity modulator HflK compare
RS_RS06745 -1.0 -3.7 sulfate ABC transporter permease subunit CysT compare
RS_RS14820 -1.0 -1.5 STAS domain-containing protein compare
RS_RS13955 -1.0 -0.8 2-Cys peroxiredoxin compare
RS_RS18380 -1.0 -6.1 sensor domain-containing diguanylate cyclase compare
RS_RS22010 -1.0 -3.8 transferase compare
RS_RS17315 -1.0 -1.2 hypothetical protein compare
RS_RS25450 -1.0 -1.7 hypothetical protein compare
RS_RS06155 -1.0 -5.5 ribonuclease R compare
RS_RS14920 -1.0 -4.7 iron donor protein CyaY compare
RS_RS25805 -1.0 -1.0 hypothetical protein compare
RS_RS05135 -1.0 -2.8 molybdopterin molybdenumtransferase MoeA compare
RS_RS14610 -1.0 -3.0 ubiquinol oxidase subunit II compare
RS_RS19165 -1.0 -6.4 TonB-dependent receptor compare
RS_RS07735 -1.0 -1.2 sulfite exporter TauE/SafE family protein compare
RS_RS03970 -1.0 -1.9 polyisoprenoid-binding protein compare
RS_RS12180 -0.9 -2.4 CysB family HTH-type transcriptional regulator compare
RS_RS00460 -0.9 -5.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
RS_RS03455 -0.9 -1.5 glycosyltransferase family 2 protein compare
RS_RS09700 -0.9 -2.3 phage baseplate assembly protein V compare
RS_RS07805 -0.9 -2.4 hypothetical protein compare
RS_RS00200 -0.9 -3.4 DNA-binding response regulator compare
RS_RS14845 -0.9 -6.2 ABC transporter ATP-binding protein compare
RS_RS25880 -0.9 -0.7 hypothetical protein compare
RS_RS03505 -0.9 -2.9 protein-L-isoaspartate O-methyltransferase compare
RS_RS02580 -0.9 -2.4 ribosomal RNA small subunit methyltransferase A compare
RS_RS18830 -0.9 -0.9 flagellar P-ring protein FlgI compare
RS_RS22050 -0.9 -6.4 hypothetical protein compare
RS_RS00450 -0.9 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
RS_RS05980 -0.9 -0.5 recombination protein RecR compare
RS_RS21975 -0.9 -6.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
RS_RS14805 -0.9 -1.7 BolA family transcriptional regulator compare
RS_RS02510 -0.9 -1.3 Fis family transcriptional regulator compare
RS_RS01400 -0.8 -3.4 thiol:disulfide interchange protein DsbA/DsbL compare
RS_RS09740 -0.8 -0.3 tail protein X compare
RS_RS26115 -0.8 -3.4 hypothetical protein compare
RS_RS03460 -0.8 -1.6 glycosyltransferase family 2 protein compare
RS_RS05935 -0.8 -0.8 membrane protein compare
RS_RS16090 -0.8 -0.8 hypothetical protein compare
RS_RS19010 -0.8 -2.1 flagellar protein FliT compare
RS_RS10435 -0.8 -1.9 DUF3106 domain-containing protein compare
RS_RS06870 -0.8 -1.7 lysophospholipid transporter LplT compare
RS_RS13200 -0.8 -1.1 molecular chaperone DnaJ compare
RS_RS10415 -0.8 -0.4 acetolactate synthase small subunit compare
RS_RS00665 -0.8 -6.0 lauroyl acyltransferase compare
RS_RS18685 -0.8 -1.9 Cd(II)/Pb(II)-responsive transcriptional regulator compare
RS_RS10990 -0.8 -1.4 YebC/PmpR family DNA-binding transcriptional regulator compare
RS_RS11215 -0.8 -1.9 hypothetical protein compare
RS_RS21995 -0.8 -3.1 hypothetical protein compare
RS_RS11095 -0.8 -4.0 ATP-dependent helicase compare
RS_RS14520 -0.8 -1.7 redox-regulated ATPase YchF compare
RS_RS05080 -0.8 -1.2 Fe-S assembly protein IscX compare
RS_RS03180 -0.8 -1.1 flavodoxin family protein compare
RS_RS02085 -0.8 -4.3 MFS transporter compare
RS_RS00830 -0.8 -4.0 FAD-dependent oxidoreductase compare
RS_RS24575 -0.8 -1.8 hypothetical protein compare
RS_RS19285 -0.8 -3.0 TetR family transcriptional regulator compare
RS_RS06990 -0.8 -3.3 succinyldiaminopimelate transaminase compare
RS_RS12740 -0.8 -5.2 tRNA epoxyqueuosine(34) reductase QueG compare
RS_RS05290 -0.8 -4.5 beta-N-acetylhexosaminidase compare
RS_RS09960 -0.8 -1.8 site-specific DNA-methyltransferase compare
RS_RS05005 -0.8 -3.9 UvrABC system protein B compare
RS_RS16480 -0.8 -3.7 ATP-dependent DNA helicase Rep compare
RS_RS11195 -0.8 -2.7 DNA polymerase I compare
RS_RS11130 -0.7 -1.0 GatB/YqeY domain-containing protein compare
RS_RS11945 -0.7 -0.9 iron-sulfur cluster carrier protein ApbC compare
RS_RS04170 -0.7 -2.9 hypothetical protein compare
RS_RS02865 -0.7 -2.9 pyruvate kinase compare
RS_RS08675 -0.7 -1.4 peptidyl-prolyl cis-trans isomerase compare
RS_RS02650 -0.7 -1.5 hypothetical protein compare
RS_RS03160 -0.7 -0.9 cytochrome c compare
RS_RS13630 -0.7 -1.0 NUDIX hydrolase compare
RS_RS14335 -0.7 -0.9 ABC transporter ATP-binding protein compare
RS_RS08180 -0.7 -3.4 RNA-binding transcriptional accessory protein compare
RS_RS25975 -0.7 -2.9 hypothetical protein compare
RS_RS02305 -0.7 -0.8 DUF502 domain-containing protein compare
RS_RS13470 -0.7 -3.0 hydrogen peroxide-inducible genes activator compare
RS_RS24070 -0.7 -2.2 two-component sensor histidine kinase compare
RS_RS00140 -0.7 -3.8 NAD-dependent succinate-semialdehyde dehydrogenase compare
RS_RS01825 -0.7 -2.1 heme A synthase compare
RS_RS07835 -0.7 -3.2 FAD-binding oxidoreductase compare
RS_RS22315 -0.7 -1.2 hypothetical protein compare
RS_RS05810 -0.7 -3.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum GMI1000 in survival experiments

For survival Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days across organisms