Experiment set9IT085 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14505 -5.8 -5.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS02640 -5.7 -17.3 diaminopimelate decarboxylase compare
ABZR87_RS02160 -5.5 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14500 -5.5 -16.5 tryptophan synthase subunit beta compare
ABZR87_RS02570 -5.4 -25.3 glutamate synthase-related protein compare
ABZR87_RS14950 -5.2 -6.1 acetolactate synthase small subunit compare
ABZR87_RS14540 -5.2 -8.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS09445 -5.1 -14.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS13250 -4.9 -5.5 phosphoserine phosphatase SerB compare
ABZR87_RS11625 -4.9 -14.3 malate synthase A compare
ABZR87_RS21795 -4.9 -9.1 NUDIX domain-containing protein compare
ABZR87_RS05200 -4.9 -21.6 homoserine O-acetyltransferase compare
ABZR87_RS02595 -4.8 -13.4 shikimate kinase compare
ABZR87_RS14530 -4.6 -11.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS11440 -4.6 -10.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS06770 -4.5 -8.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS00285 -4.5 -3.1 acetylornithine transaminase compare
ABZR87_RS01810 -4.5 -5.0 glutamate 5-kinase compare
ABZR87_RS13790 -4.4 -12.9 chorismate synthase compare
ABZR87_RS02140 -4.4 -22.3 anthranilate synthase component I compare
ABZR87_RS09450 -4.4 -10.0 prephenate dehydratase compare
ABZR87_RS09465 -4.3 -9.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14535 -4.3 -9.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS07380 -4.3 -16.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS08630 -4.2 -10.2 dihydroorotase compare
ABZR87_RS22970 -4.2 -14.9 cystathionine gamma-synthase family protein compare
ABZR87_RS04865 -4.2 -4.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02155 -4.2 -10.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS16660 -4.1 -9.4 helix-turn-helix domain-containing protein compare
ABZR87_RS14955 -4.0 -8.5 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS20880 -4.0 -11.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS13415 -4.0 -9.2 IclR family transcriptional regulator compare
ABZR87_RS02565 -4.0 -8.4 glutamate synthase subunit beta compare
ABZR87_RS16170 -3.9 -7.7 argininosuccinate lyase compare
ABZR87_RS00835 -3.9 -9.3 argininosuccinate synthase compare
ABZR87_RS20875 -3.9 -8.7 LysR family transcriptional regulator compare
ABZR87_RS00435 -3.8 -10.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS07360 -3.8 -16.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02590 -3.7 -12.2 3-dehydroquinate synthase compare
ABZR87_RS05100 -3.7 -7.8 RNA polymerase-binding protein DksA compare
ABZR87_RS06645 -3.5 -3.3 TlpA disulfide reductase family protein compare
ABZR87_RS09935 -3.3 -6.7 amino acid aminotransferase compare
ABZR87_RS10240 -3.3 -3.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS00210 -3.3 -12.2 nitrite/sulfite reductase compare
ABZR87_RS17485 -3.3 -9.2 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS01110 -3.3 -10.3 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS00205 -3.2 -4.4 DUF934 domain-containing protein compare
ABZR87_RS05170 -3.2 -6.4 acetylglutamate kinase compare
ABZR87_RS00195 -3.2 -4.0 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS00200 -3.2 -6.9 phosphoadenylyl-sulfate reductase compare
ABZR87_RS01615 -3.1 -4.1 RNB domain-containing ribonuclease compare
ABZR87_RS00190 -3.0 -10.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS05590 -3.0 -3.5 orotate phosphoribosyltransferase compare
ABZR87_RS09555 -3.0 -9.1 acyl-CoA dehydrogenase compare
ABZR87_RS07665 -3.0 -13.7 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS17475 -2.9 -9.3 3-hydroxyisobutyrate dehydrogenase conserved
ABZR87_RS00185 -2.9 -5.2 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS12785 -2.9 -2.8 endopeptidase La compare
ABZR87_RS05305 -2.9 -11.2 TetR family transcriptional regulator compare
ABZR87_RS00220 -2.8 -9.7 CysB family HTH-type transcriptional regulator compare
ABZR87_RS08625 -2.8 -3.3 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS11195 -2.8 -12.3 pseudouridine synthase compare
ABZR87_RS04975 -2.8 -4.9 peptide deformylase compare
ABZR87_RS13375 -2.7 -10.1 NUDIX hydrolase compare
ABZR87_RS16185 -2.7 -3.9 dCTP deaminase compare
ABZR87_RS10565 -2.6 -6.6 cupin domain-containing protein compare
ABZR87_RS17455 -2.6 -6.1 AraC family transcriptional regulator conserved
ABZR87_RS12795 -2.6 -7.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS16960 -2.5 -6.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS12790 -2.5 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS02235 -2.4 -7.5 response regulator compare
ABZR87_RS08695 -2.4 -10.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS02145 -2.4 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14115 -2.4 -3.7 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS06705 -2.3 -13.3 glutamate--cysteine ligase compare
ABZR87_RS16250 -2.3 -5.2 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS17465 -2.2 -7.5 AMP-binding protein conserved
ABZR87_RS06710 -2.1 -13.6 glutathione synthase compare
ABZR87_RS13175 -2.1 -2.7 tRNA-Leu compare
ABZR87_RS01645 -2.1 -5.7 type II 3-dehydroquinate dehydratase compare
ABZR87_RS02225 -2.1 -12.1 ATP-binding protein compare
ABZR87_RS06845 -2.0 -10.7 heme o synthase compare
ABZR87_RS17215 -2.0 -7.3 1,4-alpha-glucan branching protein GlgB compare
ABZR87_RS16180 -2.0 -7.0 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS01605 -2.0 -10.1 shikimate dehydrogenase compare
ABZR87_RS02480 -1.9 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS00355 -1.9 -11.2 quinolinate synthase NadA compare
ABZR87_RS06395 -1.8 -4.7 response regulator compare
ABZR87_RS00350 -1.8 -5.7 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS04125 -1.8 -7.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS11815 -1.8 -8.2 [protein-PII] uridylyltransferase compare
ABZR87_RS14490 -1.8 -10.5 tryptophan synthase subunit alpha compare
ABZR87_RS07635 -1.7 -3.9 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08655 -1.7 -5.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS08645 -1.7 -1.2 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS14380 -1.7 -6.3 glutamate racemase compare
ABZR87_RS04945 -1.6 -2.8 DUF4390 domain-containing protein compare
ABZR87_RS13300 -1.6 -8.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS06715 -1.6 -3.0 PTS sugar transporter subunit IIA compare
ABZR87_RS07620 -1.6 -4.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS17470 -1.6 -5.7 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
ABZR87_RS08700 -1.6 -5.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS01685 -1.5 -4.8 histone H1-like DNA-binding protein compare
ABZR87_RS00360 -1.5 -2.5 acyl-CoA desaturase compare
ABZR87_RS06030 -1.5 -1.8 AraC family transcriptional regulator compare
ABZR87_RS10620 -1.5 -2.5 serine O-acetyltransferase compare
ABZR87_RS16080 -1.5 -4.2 P-II family nitrogen regulator compare
ABZR87_RS05350 -1.5 -5.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS13285 -1.5 -9.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS14665 -1.4 -2.2 histidine phosphatase family protein compare
ABZR87_RS10785 -1.4 -6.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS17460 -1.4 -2.0 acyl-CoA dehydrogenase compare
ABZR87_RS16125 -1.4 -4.4 heme biosynthesis protein HemY compare
ABZR87_RS06495 -1.4 -2.6 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS01885 -1.4 -3.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS07625 -1.4 -3.2 Holliday junction branch migration protein RuvA compare
ABZR87_RS11125 -1.3 -6.3 cell division protein ZapE compare
ABZR87_RS00215 -1.3 -4.3 sulfite exporter TauE/SafE family protein compare
ABZR87_RS22340 -1.3 -2.3 hypothetical protein compare
ABZR87_RS07035 -1.3 -7.2 RNase adapter RapZ compare
ABZR87_RS08660 -1.3 -5.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS10780 -1.3 -4.2 PD-(D/E)XK nuclease family protein compare
ABZR87_RS13475 -1.3 -6.9 PAS domain S-box protein compare
ABZR87_RS15810 -1.3 -3.3 hypothetical protein compare
ABZR87_RS00875 -1.3 -3.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS08505 -1.2 -1.8 CpaE family protein compare
ABZR87_RS03195 -1.2 -9.2 cation diffusion facilitator family transporter compare
ABZR87_RS09625 -1.2 -8.2 CobD/CbiB family protein compare
ABZR87_RS22300 -1.2 -1.4 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS06315 -1.2 -8.8 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS08025 -1.2 -4.3 DUF2946 family protein compare
ABZR87_RS12345 -1.2 -1.3 dethiobiotin synthase compare
ABZR87_RS02380 -1.2 -7.6 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS05130 -1.1 -1.3 CsbD family protein compare
ABZR87_RS15405 -1.1 -2.7 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS10120 -1.1 -2.0 YceD family protein compare
ABZR87_RS00440 -1.1 -6.5 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS21285 -1.1 -1.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02575 -1.1 -4.2 transposase compare
ABZR87_RS07050 -1.1 -1.4 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS23295 -1.1 -1.6 hypothetical protein compare
ABZR87_RS00345 -1.1 -8.0 L-aspartate oxidase compare
ABZR87_RS03565 -1.1 -5.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS17650 -1.1 -6.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS21815 -1.1 -0.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS14510 -1.1 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS06745 -1.0 -4.6 S41 family peptidase compare
ABZR87_RS01980 -1.0 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS14575 -1.0 -3.8 GntR family transcriptional regulator compare
ABZR87_RS02385 -1.0 -3.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS01640 -1.0 -4.1 TlpA disulfide reductase family protein compare
ABZR87_RS20665 -1.0 -3.7 IclR family transcriptional regulator compare
ABZR87_RS17145 -1.0 -7.8 AMP nucleosidase compare
ABZR87_RS02230 -1.0 -4.1 response regulator compare
ABZR87_RS07675 -1.0 -5.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS11245 -1.0 -5.1 translational GTPase TypA compare
ABZR87_RS17315 -1.0 -3.3 MarR family transcriptional regulator compare
ABZR87_RS15440 -1.0 -2.9 ribonuclease G compare
ABZR87_RS10820 -1.0 -3.7 LysR substrate-binding domain-containing protein compare
ABZR87_RS02375 -1.0 -6.0 cytochrome c1 compare
ABZR87_RS01420 -1.0 -1.9 outer membrane protein assembly factor BamE compare
ABZR87_RS12800 -1.0 -3.1 trigger factor compare
ABZR87_RS01035 -1.0 -3.7 histidine utilization repressor compare
ABZR87_RS02445 -1.0 -3.5 Sec-independent protein translocase protein TatB compare
ABZR87_RS04640 -1.0 -2.1 hypothetical protein compare
ABZR87_RS14080 -0.9 -2.4 phosphate signaling complex protein PhoU compare
ABZR87_RS04785 -0.9 -5.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS02180 -0.9 -7.2 M61 family metallopeptidase compare
ABZR87_RS02680 -0.9 -7.1 c-type cytochrome compare
ABZR87_RS05060 -0.9 -3.7 DUF484 family protein compare
ABZR87_RS02440 -0.9 -5.5 twin-arginine translocase subunit TatC compare
ABZR87_RS10610 -0.9 -1.4 inositol monophosphatase family protein compare
ABZR87_RS20730 -0.9 -1.6 hypothetical protein compare
ABZR87_RS13770 -0.9 -5.7 CoA transferase subunit A compare
ABZR87_RS06405 -0.9 -1.4 hypothetical protein compare
ABZR87_RS04880 -0.9 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS06800 -0.9 -7.3 cytochrome c oxidase subunit I compare
ABZR87_RS07730 -0.9 -1.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS06850 -0.9 -5.1 SCO family protein compare
ABZR87_RS04940 -0.9 -4.3 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02020 -0.8 -5.9 long-chain fatty acid--CoA ligase compare
ABZR87_RS09035 -0.8 -2.9 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS09930 -0.8 -6.4 polyhydroxyalkanoate depolymerase compare
ABZR87_RS02655 -0.8 -4.6 anti-sigma factor compare
ABZR87_RS06810 -0.8 -3.9 cytochrome c oxidase assembly protein compare
ABZR87_RS06795 -0.8 -6.0 cytochrome c oxidase subunit II compare
ABZR87_RS17310 -0.8 -3.4 PadR family transcriptional regulator compare
ABZR87_RS12970 -0.8 -2.9 putative holin compare
ABZR87_RS12965 -0.8 -1.9 tail protein X compare
ABZR87_RS10550 -0.8 -1.1 outer membrane protein assembly factor BamC compare
ABZR87_RS06820 -0.8 -4.4 cytochrome c oxidase subunit 3 compare
ABZR87_RS22690 -0.8 -2.1 XRE family transcriptional regulator compare
ABZR87_RS11940 -0.8 -2.2 SsrA-binding protein SmpB compare
ABZR87_RS23095 -0.7 -1.2 MarR family transcriptional regulator compare
ABZR87_RS09105 -0.7 -5.3 IclR family transcriptional regulator compare
ABZR87_RS14495 -0.7 -3.8 site-specific DNA-methyltransferase compare
ABZR87_RS10395 -0.7 -2.8 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS13315 -0.7 -4.2 RluA family pseudouridine synthase compare
ABZR87_RS01760 -0.7 -0.9 PP0621 family protein compare
ABZR87_RS11525 -0.7 -1.6 molybdopterin-binding protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium butyrate in Ralstonia sp. UNC404CL21Col

For carbon source Sodium butyrate across organisms