Experiment set9IT083 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS01810 -4.6 -4.5 glutamate 5-kinase compare
ABZR87_RS05170 -4.4 -3.0 acetylglutamate kinase compare
ABZR87_RS16170 -3.8 -6.4 argininosuccinate lyase compare
ABZR87_RS00285 -3.7 -3.6 acetylornithine transaminase compare
ABZR87_RS14505 -3.7 -5.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS02160 -3.6 -8.4 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02595 -3.6 -10.3 shikimate kinase compare
ABZR87_RS07380 -3.5 -16.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02570 -3.5 -23.0 glutamate synthase-related protein compare
ABZR87_RS08625 -3.4 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02565 -3.4 -7.6 glutamate synthase subunit beta compare
ABZR87_RS14490 -3.4 -11.2 tryptophan synthase subunit alpha compare
ABZR87_RS02640 -3.4 -14.7 diaminopimelate decarboxylase compare
ABZR87_RS00835 -3.4 -9.1 argininosuccinate synthase compare
ABZR87_RS06770 -3.4 -9.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS14950 -3.3 -4.4 acetolactate synthase small subunit compare
ABZR87_RS13790 -3.3 -12.1 chorismate synthase compare
ABZR87_RS09445 -3.3 -12.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02155 -3.3 -8.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS11440 -3.2 -9.3 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS02590 -3.2 -10.0 3-dehydroquinate synthase compare
ABZR87_RS01110 -3.2 -9.6 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS20880 -3.2 -11.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS14535 -3.2 -7.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14530 -3.1 -10.6 3-isopropylmalate dehydrogenase compare
ABZR87_RS02145 -3.1 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS09450 -3.1 -6.2 prephenate dehydratase compare
ABZR87_RS09465 -3.1 -9.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS22970 -3.1 -10.1 cystathionine gamma-synthase family protein compare
ABZR87_RS14955 -3.0 -9.3 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00185 -3.0 -5.7 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS13415 -3.0 -8.9 IclR family transcriptional regulator compare
ABZR87_RS14540 -3.0 -7.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS13250 -2.9 -3.6 phosphoserine phosphatase SerB compare
ABZR87_RS10565 -2.9 -6.0 cupin domain-containing protein compare
ABZR87_RS02140 -2.9 -16.9 anthranilate synthase component I compare
ABZR87_RS07360 -2.8 -11.7 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14500 -2.8 -13.8 tryptophan synthase subunit beta compare
ABZR87_RS11625 -2.8 -9.7 malate synthase A compare
ABZR87_RS05100 -2.8 -6.0 RNA polymerase-binding protein DksA compare
ABZR87_RS00205 -2.6 -3.3 DUF934 domain-containing protein compare
ABZR87_RS05200 -2.5 -14.5 homoserine O-acetyltransferase compare
ABZR87_RS09935 -2.5 -6.2 amino acid aminotransferase compare
ABZR87_RS14665 -2.5 -2.5 histidine phosphatase family protein compare
ABZR87_RS14360 -2.5 -10.6 acetate--CoA ligase compare
ABZR87_RS00190 -2.4 -11.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00220 -2.3 -9.2 CysB family HTH-type transcriptional regulator compare
ABZR87_RS08630 -2.3 -7.9 dihydroorotase compare
ABZR87_RS00200 -2.3 -3.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00360 -2.2 -2.9 acyl-CoA desaturase compare
ABZR87_RS00210 -2.2 -8.9 nitrite/sulfite reductase compare
ABZR87_RS11125 -2.2 -7.2 cell division protein ZapE compare
ABZR87_RS12785 -2.2 -4.8 endopeptidase La compare
ABZR87_RS01645 -2.1 -5.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS04865 -2.1 -5.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS16250 -2.1 -5.0 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS00195 -2.1 -6.7 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS07050 -2.1 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS02480 -2.1 -3.8 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS10120 -2.0 -2.1 YceD family protein compare
ABZR87_RS20875 -2.0 -5.3 LysR family transcriptional regulator compare
ABZR87_RS06030 -2.0 -1.8 AraC family transcriptional regulator compare
ABZR87_RS05140 -2.0 -4.0 ATP-binding protein compare
ABZR87_RS09635 -1.9 -2.5 ribosome small subunit-dependent GTPase A compare
ABZR87_RS09710 -1.9 -4.2 tRNA-Arg compare
ABZR87_RS05305 -1.8 -8.3 TetR family transcriptional regulator compare
ABZR87_RS07700 -1.7 -2.7 peptidylprolyl isomerase compare
ABZR87_RS01285 -1.7 -1.6 preprotein translocase subunit YajC compare
ABZR87_RS14115 -1.7 -3.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS00845 -1.6 -4.9 DUF3579 domain-containing protein compare
ABZR87_RS16125 -1.6 -5.7 heme biosynthesis protein HemY compare
ABZR87_RS05590 -1.6 -2.9 orotate phosphoribosyltransferase compare
ABZR87_RS16185 -1.6 -2.4 dCTP deaminase compare
ABZR87_RS16660 -1.6 -4.1 helix-turn-helix domain-containing protein compare
ABZR87_RS10400 -1.5 -3.6 hypothetical protein compare
ABZR87_RS12795 -1.5 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS07625 -1.5 -3.7 Holliday junction branch migration protein RuvA compare
ABZR87_RS01675 -1.5 -1.9 carbohydrate kinase family protein compare
ABZR87_RS13745 -1.4 -10.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS01615 -1.4 -3.2 RNB domain-containing ribonuclease compare
ABZR87_RS21095 -1.4 -1.0 TRAP transporter small permease compare
ABZR87_RS02575 -1.4 -5.9 transposase compare
ABZR87_RS08655 -1.4 -4.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS12790 -1.4 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00970 -1.3 -1.2 molecular chaperone DnaJ compare
ABZR87_RS07635 -1.3 -3.1 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS14495 -1.3 -3.5 site-specific DNA-methyltransferase compare
ABZR87_RS15705 -1.3 -3.0 UvrD-helicase domain-containing protein compare
ABZR87_RS10085 -1.3 -2.0 Rne/Rng family ribonuclease compare
ABZR87_RS06745 -1.3 -5.1 S41 family peptidase compare
ABZR87_RS22585 -1.3 -1.7 methyl-accepting chemotaxis protein compare
ABZR87_RS06395 -1.3 -3.8 response regulator compare
ABZR87_RS08695 -1.3 -7.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS03780 -1.3 -1.6 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS10610 -1.3 -1.9 inositol monophosphatase family protein compare
ABZR87_RS04125 -1.2 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS00355 -1.2 -7.2 quinolinate synthase NadA compare
ABZR87_RS01605 -1.2 -5.8 shikimate dehydrogenase compare
ABZR87_RS11435 -1.2 -3.9 Mth938-like domain-containing protein compare
ABZR87_RS08700 -1.2 -4.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS11615 -1.2 -1.5 LysR family transcriptional regulator compare
ABZR87_RS16180 -1.2 -4.1 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS09895 -1.2 -1.3 DUF1841 family protein compare
ABZR87_RS00345 -1.2 -9.1 L-aspartate oxidase compare
ABZR87_RS20665 -1.1 -2.5 IclR family transcriptional regulator compare
ABZR87_RS07605 -1.1 -3.0 D-aminoacyl-tRNA deacylase compare
ABZR87_RS10930 -1.1 -1.2 outer membrane protein assembly factor BamB compare
ABZR87_RS16960 -1.1 -3.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS08970 -1.1 -4.5 protein TolQ compare
ABZR87_RS04940 -1.1 -4.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS10620 -1.1 -1.6 serine O-acetyltransferase compare
ABZR87_RS23095 -1.1 -1.4 MarR family transcriptional regulator compare
ABZR87_RS09460 -1.1 -4.7 prephenate dehydrogenase compare
ABZR87_RS00350 -1.1 -3.9 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS00325 -1.1 -1.8 peptidylprolyl isomerase compare
ABZR87_RS11065 -1.1 -5.2 nitrogen regulation protein NR(II) compare
ABZR87_RS16620 -1.0 -2.2 hypothetical protein compare
ABZR87_RS09525 -1.0 -7.0 histone deacetylase family protein compare
ABZR87_RS06705 -1.0 -6.6 glutamate--cysteine ligase compare
ABZR87_RS06845 -1.0 -5.6 heme o synthase compare
ABZR87_RS23380 -1.0 -1.5 chemotaxis protein CheW compare
ABZR87_RS00215 -1.0 -3.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS20490 -1.0 -4.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
ABZR87_RS08645 -1.0 -0.7 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS15810 -1.0 -3.1 hypothetical protein compare
ABZR87_RS10240 -1.0 -2.1 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS13475 -1.0 -5.0 PAS domain S-box protein compare
ABZR87_RS14890 -1.0 -1.0 preprotein translocase subunit SecG compare
ABZR87_RS11245 -1.0 -4.4 translational GTPase TypA compare
ABZR87_RS22000 -1.0 -1.7 hypothetical protein compare
ABZR87_RS02150 -1.0 -2.2 lysozyme inhibitor LprI family protein compare
ABZR87_RS15290 -1.0 -3.2 hypothetical protein compare
ABZR87_RS08585 -0.9 -1.5 chemotaxis protein CheW compare
ABZR87_RS08980 -0.9 -2.8 cell envelope integrity protein TolA compare
ABZR87_RS09515 -0.9 -1.0 cysteine synthase CysM compare
ABZR87_RS16515 -0.9 -0.9 helix-turn-helix domain-containing protein compare
ABZR87_RS00875 -0.9 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS11815 -0.9 -5.6 [protein-PII] uridylyltransferase compare
ABZR87_RS04990 -0.9 -1.6 thioredoxin family protein compare
ABZR87_RS06405 -0.9 -1.4 hypothetical protein compare
ABZR87_RS12490 -0.9 -2.5 DUF4936 family protein compare
ABZR87_RS07705 -0.9 -2.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS10820 -0.9 -3.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS23295 -0.9 -0.8 hypothetical protein compare
ABZR87_RS00435 -0.9 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13285 -0.9 -5.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS09625 -0.9 -5.5 CobD/CbiB family protein compare
ABZR87_RS06315 -0.9 -6.2 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS08525 -0.8 -3.0 prepilin peptidase compare
ABZR87_RS22340 -0.8 -1.3 hypothetical protein compare
ABZR87_RS11265 -0.8 -1.9 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS16760 -0.8 -2.0 GGDEF domain-containing protein compare
ABZR87_RS11330 -0.8 -2.3 transcriptional repressor LexA compare
ABZR87_RS21925 -0.8 -2.1 hypothetical protein compare
ABZR87_RS11770 -0.8 -5.0 succinyldiaminopimelate transaminase compare
ABZR87_RS00965 -0.8 -5.9 bifunctional anthranilate synthase component I family protein/class IV aminotransferase compare
ABZR87_RS13645 -0.8 -0.8 hypothetical protein compare
ABZR87_RS13290 -0.8 -2.1 3-ketoacyl-ACP reductase compare
ABZR87_RS10780 -0.8 -2.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS20500 -0.8 -0.8 hypothetical protein compare
ABZR87_RS09975 -0.7 -2.4 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS21150 -0.7 -2.6 branched-chain amino acid ABC transporter permease compare
ABZR87_RS01565 -0.7 -4.0 NADP-dependent malic enzyme compare
ABZR87_RS04975 -0.7 -1.9 peptide deformylase compare
ABZR87_RS08235 -0.7 -0.9 hypothetical protein compare
ABZR87_RS22835 -0.7 -2.7 2OG-Fe(II) oxygenase compare
ABZR87_RS08660 -0.7 -3.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS14380 -0.7 -3.5 glutamate racemase compare
ABZR87_RS23035 -0.7 -1.0 PIG-L family deacetylase compare
ABZR87_RS05145 -0.7 -1.1 copper chaperone PCu(A)C compare
ABZR87_RS16610 -0.7 -3.2 hypothetical protein compare
ABZR87_RS08330 -0.7 -5.2 isocitrate lyase compare
ABZR87_RS12815 -0.7 -1.9 siderophore ferric iron reductase compare
ABZR87_RS00445 -0.7 -2.3 cold-shock protein compare
ABZR87_RS05495 -0.7 -0.9 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS13300 -0.7 -4.1 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS21950 -0.7 -2.9 hypothetical protein compare
ABZR87_RS16080 -0.7 -1.0 P-II family nitrogen regulator compare
ABZR87_RS07385 -0.7 -0.9 HIT family protein compare
ABZR87_RS11070 -0.7 -3.5 nitrogen regulation protein NR(I) compare
ABZR87_RS03180 -0.7 -1.2 hypothetical protein compare
ABZR87_RS10030 -0.7 -1.4 SDR family oxidoreductase compare
ABZR87_RS06710 -0.7 -4.8 glutathione synthase compare
ABZR87_RS13400 -0.7 -0.7 hypothetical protein compare
ABZR87_RS07510 -0.7 -2.1 LysR family transcriptional regulator compare
ABZR87_RS18255 -0.7 -1.6 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS04785 -0.7 -3.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS16070 -0.7 -1.9 Smr/MutS family protein compare
ABZR87_RS13460 -0.6 -2.4 MFS transporter compare
ABZR87_RS16845 -0.6 -0.7 hypothetical protein compare
ABZR87_RS16130 -0.6 -2.7 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS07620 -0.6 -1.6 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS12955 -0.6 -2.0 terminase endonuclease subunit compare
ABZR87_RS20945 -0.6 -1.4 DNA-3-methyladenine glycosylase I compare
ABZR87_RS05060 -0.6 -1.4 DUF484 family protein compare
ABZR87_RS02335 -0.6 -3.4 ubiquinol oxidase subunit II compare
ABZR87_RS00795 -0.6 -2.6 site-specific tyrosine recombinase XerD compare
ABZR87_RS14680 -0.6 -1.1 SDR family oxidoreductase compare
ABZR87_RS01455 -0.6 -1.6 SDR family oxidoreductase compare
ABZR87_RS00175 -0.6 -1.6 LysR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium acetate in Ralstonia sp. UNC404CL21Col

For carbon source Sodium acetate across organisms