Experiment set9IT082 for Ralstonia sp. UNC404CL21Col

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14950 -6.5 -4.5 acetolactate synthase small subunit compare
ABZR87_RS13250 -6.4 -4.4 phosphoserine phosphatase SerB compare
ABZR87_RS02595 -6.2 -7.4 shikimate kinase compare
ABZR87_RS02160 -6.0 -5.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS01810 -5.4 -3.7 glutamate 5-kinase compare
ABZR87_RS05100 -5.4 -5.3 RNA polymerase-binding protein DksA compare
ABZR87_RS02565 -5.3 -6.3 glutamate synthase subunit beta compare
ABZR87_RS02570 -5.3 -24.6 glutamate synthase-related protein compare
ABZR87_RS05200 -5.3 -19.4 homoserine O-acetyltransferase compare
ABZR87_RS16140 -5.2 -16.7 phosphoenolpyruvate carboxylase compare
ABZR87_RS00200 -5.2 -6.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS14500 -5.1 -16.1 tryptophan synthase subunit beta compare
ABZR87_RS02145 -5.1 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13790 -5.1 -9.8 chorismate synthase compare
ABZR87_RS02155 -5.0 -9.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS20875 -5.0 -9.6 LysR family transcriptional regulator compare
ABZR87_RS14535 -5.0 -8.3 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS09450 -5.0 -10.0 prephenate dehydratase compare
ABZR87_RS07360 -4.9 -16.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09465 -4.8 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00210 -4.8 -9.6 nitrite/sulfite reductase compare
ABZR87_RS14490 -4.7 -10.9 tryptophan synthase subunit alpha compare
ABZR87_RS00190 -4.7 -12.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS14530 -4.7 -11.3 3-isopropylmalate dehydrogenase compare
ABZR87_RS22920 -4.5 -3.1 phosphogluconate dehydratase compare
ABZR87_RS09445 -4.5 -14.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS20880 -4.5 -11.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS22970 -4.5 -11.4 cystathionine gamma-synthase family protein compare
ABZR87_RS11440 -4.4 -10.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS08630 -4.2 -10.5 dihydroorotase compare
ABZR87_RS09935 -4.2 -5.0 amino acid aminotransferase compare
ABZR87_RS14540 -4.2 -9.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS00205 -4.2 -4.6 DUF934 domain-containing protein compare
ABZR87_RS02140 -4.2 -19.4 anthranilate synthase component I compare
ABZR87_RS07380 -4.2 -14.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02640 -4.1 -15.5 diaminopimelate decarboxylase compare
ABZR87_RS00835 -4.0 -7.7 argininosuccinate synthase compare
ABZR87_RS02590 -4.0 -11.3 3-dehydroquinate synthase compare
ABZR87_RS01110 -4.0 -12.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14955 -4.0 -7.6 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS05170 -4.0 -4.7 acetylglutamate kinase compare
ABZR87_RS16170 -3.9 -7.4 argininosuccinate lyase compare
ABZR87_RS00195 -3.9 -5.6 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS06770 -3.8 -7.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS04865 -3.8 -5.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS11760 -3.7 -1.4 membrane protein compare
ABZR87_RS16080 -3.7 -2.8 P-II family nitrogen regulator compare
ABZR87_RS08625 -3.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00220 -3.5 -11.0 CysB family HTH-type transcriptional regulator compare
ABZR87_RS23225 -3.4 -9.5 sugar ABC transporter permease compare
ABZR87_RS00185 -3.4 -5.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS05305 -3.4 -12.5 TetR family transcriptional regulator compare
ABZR87_RS13285 -3.4 -14.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS14505 -3.4 -5.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS13300 -3.3 -12.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS00285 -3.3 -4.4 acetylornithine transaminase compare
ABZR87_RS10610 -3.2 -3.0 inositol monophosphatase family protein compare
ABZR87_RS23215 -3.1 -6.4 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS07320 -3.0 -6.4 gluconokinase compare
ABZR87_RS23220 -3.0 -11.4 xylose ABC transporter ATP-binding protein compare
ABZR87_RS14115 -3.0 -4.1 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS00435 -2.9 -10.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS22915 -2.9 -11.3 glucose-6-phosphate dehydrogenase compare
ABZR87_RS13290 -2.7 -6.9 3-ketoacyl-ACP reductase compare
ABZR87_RS01675 -2.7 -3.1 carbohydrate kinase family protein compare
ABZR87_RS02480 -2.5 -4.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS00355 -2.4 -11.0 quinolinate synthase NadA compare
ABZR87_RS12790 -2.4 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS12785 -2.4 -5.1 endopeptidase La compare
ABZR87_RS01645 -2.4 -5.6 type II 3-dehydroquinate dehydratase compare
ABZR87_RS19095 -2.3 -6.2 gluconate:H+ symporter compare
ABZR87_RS07665 -2.3 -11.1 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS13475 -2.3 -8.8 PAS domain S-box protein compare
ABZR87_RS01605 -2.2 -9.2 shikimate dehydrogenase compare
ABZR87_RS00350 -2.1 -5.9 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS05590 -2.1 -3.4 orotate phosphoribosyltransferase compare
ABZR87_RS09515 -2.1 -1.4 cysteine synthase CysM compare
ABZR87_RS22910 -2.0 -1.9 6-phosphogluconolactonase compare
ABZR87_RS17145 -2.0 -13.0 AMP nucleosidase compare
ABZR87_RS16960 -2.0 -5.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00875 -1.9 -4.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS10930 -1.9 -2.1 outer membrane protein assembly factor BamB compare
ABZR87_RS09625 -1.9 -9.8 CobD/CbiB family protein compare
ABZR87_RS11815 -1.9 -9.0 [protein-PII] uridylyltransferase compare
ABZR87_RS10240 -1.9 -2.9 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS05060 -1.8 -5.4 DUF484 family protein compare
ABZR87_RS15440 -1.8 -4.1 ribonuclease G compare
ABZR87_RS05350 -1.8 -6.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS12795 -1.8 -5.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS14495 -1.7 -3.3 site-specific DNA-methyltransferase compare
ABZR87_RS08700 -1.7 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS11940 -1.7 -3.9 SsrA-binding protein SmpB compare
ABZR87_RS16660 -1.7 -5.3 helix-turn-helix domain-containing protein compare
ABZR87_RS10820 -1.7 -5.0 LysR substrate-binding domain-containing protein compare
ABZR87_RS07635 -1.6 -2.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS16125 -1.6 -4.2 heme biosynthesis protein HemY compare
ABZR87_RS10780 -1.6 -4.0 PD-(D/E)XK nuclease family protein compare
ABZR87_RS10550 -1.6 -1.8 outer membrane protein assembly factor BamC compare
ABZR87_RS10275 -1.6 -2.5 DUF5818 domain-containing protein compare
ABZR87_RS15705 -1.6 -3.9 UvrD-helicase domain-containing protein compare
ABZR87_RS00215 -1.6 -3.1 sulfite exporter TauE/SafE family protein compare
ABZR87_RS02150 -1.5 -1.4 lysozyme inhibitor LprI family protein compare
ABZR87_RS16185 -1.5 -2.8 dCTP deaminase compare
ABZR87_RS04125 -1.5 -5.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS04975 -1.4 -2.1 peptide deformylase compare
ABZR87_RS20370 -1.4 -1.2 ABC transporter ATP-binding protein compare
ABZR87_RS02575 -1.4 -5.2 transposase compare
ABZR87_RS22690 -1.4 -3.6 XRE family transcriptional regulator compare
ABZR87_RS03195 -1.4 -9.4 cation diffusion facilitator family transporter compare
ABZR87_RS20730 -1.3 -2.0 hypothetical protein compare
ABZR87_RS14680 -1.3 -1.7 SDR family oxidoreductase compare
ABZR87_RS10565 -1.3 -3.2 cupin domain-containing protein compare
ABZR87_RS16250 -1.3 -4.0 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS09635 -1.3 -2.0 ribosome small subunit-dependent GTPase A compare
ABZR87_RS01035 -1.2 -3.8 histidine utilization repressor compare
ABZR87_RS09460 -1.2 -4.4 prephenate dehydrogenase compare
ABZR87_RS01980 -1.2 -2.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS10980 -1.2 -0.6 tRNA-Leu compare
ABZR87_RS11245 -1.2 -3.9 translational GTPase TypA compare
ABZR87_RS11925 -1.1 -6.6 phosphoenolpyruvate synthase compare
ABZR87_RS21795 -1.1 -3.4 NUDIX domain-containing protein compare
ABZR87_RS18320 -1.1 -3.6 HEAT repeat domain-containing protein compare
ABZR87_RS23210 -1.1 -4.6 carbohydrate porin compare
ABZR87_RS10170 -1.1 -3.4 RseA family anti-sigma factor compare
ABZR87_RS16270 -1.1 -1.7 cold-shock protein compare
ABZR87_RS21095 -1.1 -0.8 TRAP transporter small permease compare
ABZR87_RS16860 -1.1 -2.5 response regulator compare
ABZR87_RS16180 -1.1 -3.4 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS06400 -1.1 -6.1 response regulator transcription factor compare
ABZR87_RS01615 -1.1 -1.9 RNB domain-containing ribonuclease compare
ABZR87_RS08970 -1.0 -4.8 protein TolQ compare
ABZR87_RS00830 -1.0 -2.0 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS01760 -1.0 -1.1 PP0621 family protein compare
ABZR87_RS02385 -1.0 -3.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS01780 -1.0 -1.5 MarC family protein compare
ABZR87_RS19305 -1.0 -1.2 SctK family type III secretion system sorting platform protein compare
ABZR87_RS11065 -1.0 -5.0 nitrogen regulation protein NR(II) compare
ABZR87_RS02440 -1.0 -5.4 twin-arginine translocase subunit TatC compare
ABZR87_RS23295 -1.0 -1.1 hypothetical protein compare
ABZR87_RS04785 -1.0 -4.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS08655 -1.0 -3.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS10785 -1.0 -3.8 exodeoxyribonuclease V subunit beta compare
ABZR87_RS07035 -1.0 -4.7 RNase adapter RapZ compare
ABZR87_RS02680 -0.9 -6.0 c-type cytochrome compare
ABZR87_RS13645 -0.9 -0.8 hypothetical protein compare
ABZR87_RS21285 -0.9 -1.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS09085 -0.9 -4.7 DUF883 family protein compare
ABZR87_RS02380 -0.9 -5.9 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS17310 -0.9 -2.9 PadR family transcriptional regulator compare
ABZR87_RS02445 -0.9 -2.3 Sec-independent protein translocase protein TatB compare
ABZR87_RS16340 -0.9 -2.4 ABC transporter ATP-binding protein compare
ABZR87_RS05085 -0.9 -6.1 lactonase family protein compare
ABZR87_RS20140 -0.9 -1.9 PAAR domain-containing protein compare
ABZR87_RS01420 -0.9 -2.0 outer membrane protein assembly factor BamE compare
ABZR87_RS19435 -0.9 -1.8 trehalose-phosphatase compare
ABZR87_RS05205 -0.9 -3.0 methionine biosynthesis protein MetW compare
ABZR87_RS23095 -0.9 -1.2 MarR family transcriptional regulator compare
ABZR87_RS14575 -0.9 -3.4 GntR family transcriptional regulator compare
ABZR87_RS00345 -0.9 -6.3 L-aspartate oxidase compare
ABZR87_RS10620 -0.8 -1.8 serine O-acetyltransferase compare
ABZR87_RS07485 -0.8 -2.7 acetyl-CoA C-acyltransferase compare
ABZR87_RS14745 -0.8 -1.2 urease subunit gamma compare
ABZR87_RS07705 -0.8 -2.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS11265 -0.8 -1.3 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS13315 -0.8 -5.8 RluA family pseudouridine synthase compare
ABZR87_RS10195 -0.8 -1.5 signal peptidase I compare
ABZR87_RS02375 -0.8 -5.1 cytochrome c1 compare
ABZR87_RS04160 -0.8 -1.5 LysR family transcriptional regulator compare
ABZR87_RS06745 -0.8 -3.6 S41 family peptidase compare
ABZR87_RS01145 -0.8 -2.3 glycolate oxidase subunit GlcE compare
ABZR87_RS15505 -0.8 -0.9 DNA polymerase III subunit alpha compare
ABZR87_RS17970 -0.8 -1.8 methyl-accepting chemotaxis protein compare
ABZR87_RS10120 -0.8 -0.8 YceD family protein compare
ABZR87_RS08990 -0.8 -3.2 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS00970 -0.8 -0.7 molecular chaperone DnaJ compare
ABZR87_RS18910 -0.8 -1.7 DUF2239 family protein compare
ABZR87_RS13770 -0.7 -4.4 CoA transferase subunit A compare
ABZR87_RS23180 -0.7 -1.3 ABC transporter ATP-binding protein compare
ABZR87_RS07470 -0.7 -3.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11015 -0.7 -2.4 amino-acid N-acetyltransferase compare
ABZR87_RS11770 -0.7 -4.1 succinyldiaminopimelate transaminase compare
ABZR87_RS04310 -0.7 -1.8 2-dehydropantoate 2-reductase compare
ABZR87_RS06845 -0.7 -4.0 heme o synthase compare
ABZR87_RS12295 -0.7 -3.1 muconate/chloromuconate family cycloisomerase compare
ABZR87_RS23415 -0.7 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS06385 -0.7 -3.8 CHASE3 domain-containing protein compare
ABZR87_RS22420 -0.7 -1.2 nuclear transport factor 2 family protein compare
ABZR87_RS09030 -0.7 -3.2 NAD(P)-dependent oxidoreductase compare
ABZR87_RS02020 -0.7 -4.7 long-chain fatty acid--CoA ligase compare
ABZR87_RS23190 -0.7 -3.5 branched-chain amino acid ABC transporter permease compare
ABZR87_RS22900 -0.7 -2.8 MurR/RpiR family transcriptional regulator compare
ABZR87_RS09080 -0.7 -3.2 phage holin family protein compare
ABZR87_RS14235 -0.7 -3.2 formyltetrahydrofolate deformylase compare
ABZR87_RS22000 -0.7 -1.0 hypothetical protein compare
ABZR87_RS07435 -0.7 -1.6 DUF502 domain-containing protein compare
ABZR87_RS08235 -0.7 -0.8 hypothetical protein compare
ABZR87_RS15480 -0.7 -4.7 glycosyltransferase family 25 protein compare
ABZR87_RS12965 -0.7 -2.0 tail protein X compare
ABZR87_RS13445 -0.7 -2.3 phasin family protein compare
ABZR87_RS20665 -0.7 -1.6 IclR family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Ralstonia sp. UNC404CL21Col

For carbon source D-Glucose across organisms