Experiment set9IT081 for Ralstonia sp. UNC404CL21Col

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS15775 -4.3 -2.9 4-carboxymuconolactone decarboxylase compare
ABZR87_RS15780 -3.7 -5.6 3-oxoadipate enol-lactonase conserved
ABZR87_RS12090 -3.4 -3.3 protocatechuate 3,4-dioxygenase subunit alpha compare
ABZR87_RS17340 -3.3 -2.3 MarR family transcriptional regulator compare
ABZR87_RS15785 -3.3 -5.9 3-carboxy-cis,cis-muconate cycloisomerase conserved
ABZR87_RS15800 -3.2 -6.8 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS12085 -3.1 -8.0 protocatechuate 3,4-dioxygenase subunit beta conserved
ABZR87_RS14890 -3.0 -1.3 preprotein translocase subunit SecG compare
ABZR87_RS16660 -3.0 -5.4 helix-turn-helix domain-containing protein compare
ABZR87_RS17310 -2.8 -4.7 PadR family transcriptional regulator compare
ABZR87_RS15795 -2.7 -6.4 CoA transferase subunit B compare
ABZR87_RS05100 -2.6 -3.6 RNA polymerase-binding protein DksA compare
ABZR87_RS00190 -2.6 -7.2 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS05305 -2.6 -7.3 TetR family transcriptional regulator compare
ABZR87_RS13285 -2.6 -8.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS15790 -2.6 -3.0 3-oxoadipyl-CoA thiolase compare
ABZR87_RS22830 -2.5 -1.6 Crp/Fnr family transcriptional regulator compare
ABZR87_RS21285 -2.5 -2.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS04975 -2.4 -1.7 peptide deformylase compare
ABZR87_RS09710 -2.2 -2.6 tRNA-Arg compare
ABZR87_RS21940 -2.2 -1.0 hypothetical protein compare
ABZR87_RS14665 -2.2 -1.7 histidine phosphatase family protein compare
ABZR87_RS11860 -2.2 -4.9 RIP metalloprotease RseP compare
ABZR87_RS11940 -2.2 -1.5 SsrA-binding protein SmpB compare
ABZR87_RS14950 -2.1 -3.5 acetolactate synthase small subunit compare
ABZR87_RS06030 -2.1 -1.3 AraC family transcriptional regulator compare
ABZR87_RS20440 -2.1 -0.9 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS10165 -2.1 -9.6 RNA polymerase sigma factor RpoE compare
ABZR87_RS00205 -2.1 -2.8 DUF934 domain-containing protein compare
ABZR87_RS05145 -2.1 -1.6 copper chaperone PCu(A)C compare
ABZR87_RS23180 -2.0 -1.1 ABC transporter ATP-binding protein compare
ABZR87_RS15750 -2.0 -7.8 ABC transporter substrate-binding protein conserved
ABZR87_RS08645 -2.0 -0.9 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS09445 -2.0 -7.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS00875 -2.0 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS14535 -2.0 -4.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS20875 -1.9 -5.3 LysR family transcriptional regulator compare
ABZR87_RS21795 -1.9 -5.3 NUDIX domain-containing protein compare
ABZR87_RS14540 -1.9 -4.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02655 -1.9 -7.3 anti-sigma factor compare
ABZR87_RS07475 -1.9 -9.5 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABZR87_RS22970 -1.8 -7.8 cystathionine gamma-synthase family protein compare
ABZR87_RS11245 -1.8 -4.1 translational GTPase TypA compare
ABZR87_RS02400 -1.8 -6.7 Do family serine endopeptidase compare
ABZR87_RS14115 -1.8 -2.4 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13250 -1.7 -1.8 phosphoserine phosphatase SerB compare
ABZR87_RS01245 -1.7 -6.8 Dps family protein compare
ABZR87_RS02160 -1.7 -4.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS23360 -1.7 -2.0 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS01645 -1.7 -3.0 type II 3-dehydroquinate dehydratase compare
ABZR87_RS20500 -1.7 -1.0 hypothetical protein compare
ABZR87_RS14500 -1.7 -8.4 tryptophan synthase subunit beta compare
ABZR87_RS22340 -1.7 -1.7 hypothetical protein compare
ABZR87_RS02155 -1.6 -5.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS16170 -1.6 -3.4 argininosuccinate lyase compare
ABZR87_RS02020 -1.6 -7.3 long-chain fatty acid--CoA ligase compare
ABZR87_RS18325 -1.6 -1.2 ferredoxin family protein compare
ABZR87_RS14505 -1.6 -3.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS20880 -1.6 -5.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS00200 -1.6 -3.0 phosphoadenylyl-sulfate reductase compare
ABZR87_RS09465 -1.6 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00215 -1.6 -6.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS15765 -1.6 -4.8 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS07360 -1.6 -8.1 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS17565 -1.6 -3.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS12080 -1.5 -4.1 pca operon transcription factor PcaQ compare
ABZR87_RS13445 -1.5 -2.7 phasin family protein compare
ABZR87_RS01425 -1.5 -5.2 ferric iron uptake transcriptional regulator compare
ABZR87_RS14530 -1.5 -5.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS00100 -1.5 -1.1 hypothetical protein compare
ABZR87_RS05200 -1.5 -9.3 homoserine O-acetyltransferase compare
ABZR87_RS01240 -1.5 -7.7 catalase/peroxidase HPI compare
ABZR87_RS10565 -1.5 -1.5 cupin domain-containing protein compare
ABZR87_RS04125 -1.5 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS00435 -1.5 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13790 -1.5 -5.3 chorismate synthase compare
ABZR87_RS00220 -1.5 -7.1 CysB family HTH-type transcriptional regulator compare
ABZR87_RS08630 -1.4 -4.5 dihydroorotase compare
ABZR87_RS05350 -1.4 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS13645 -1.4 -0.9 hypothetical protein compare
ABZR87_RS17695 -1.4 -1.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS02640 -1.4 -7.4 diaminopimelate decarboxylase compare
ABZR87_RS16185 -1.4 -1.4 dCTP deaminase compare
ABZR87_RS00385 -1.4 -1.1 response regulator transcription factor compare
ABZR87_RS22920 -1.4 -1.7 phosphogluconate dehydratase compare
ABZR87_RS22415 -1.4 -1.5 universal stress protein compare
ABZR87_RS19435 -1.4 -2.3 trehalose-phosphatase compare
ABZR87_RS12965 -1.4 -1.6 tail protein X compare
ABZR87_RS16180 -1.4 -2.6 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS18560 -1.4 -2.0 NmrA family NAD(P)-binding protein compare
ABZR87_RS02570 -1.3 -9.8 glutamate synthase-related protein compare
ABZR87_RS00835 -1.3 -3.3 argininosuccinate synthase compare
ABZR87_RS02385 -1.3 -2.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS07380 -1.3 -6.8 FAD/FMN-binding oxidoreductase compare
ABZR87_RS06770 -1.3 -3.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS02230 -1.3 -4.3 response regulator compare
ABZR87_RS15770 -1.3 -5.1 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS15810 -1.3 -2.4 hypothetical protein compare
ABZR87_RS07385 -1.3 -2.1 HIT family protein compare
ABZR87_RS15405 -1.3 -2.2 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS00210 -1.3 -4.5 nitrite/sulfite reductase compare
ABZR87_RS09450 -1.2 -4.3 prephenate dehydratase compare
ABZR87_RS01110 -1.2 -4.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS15505 -1.2 -0.9 DNA polymerase III subunit alpha compare
ABZR87_RS07635 -1.2 -1.2 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS00185 -1.2 -2.0 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS07665 -1.2 -5.3 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS05170 -1.2 -2.0 acetylglutamate kinase compare
ABZR87_RS11000 -1.2 -4.7 transaldolase compare
ABZR87_RS11815 -1.2 -5.9 [protein-PII] uridylyltransferase compare
ABZR87_RS17140 -1.2 -3.4 LysR family transcriptional regulator compare
ABZR87_RS05060 -1.1 -2.6 DUF484 family protein compare
ABZR87_RS04245 -1.1 -6.4 OmpW family protein compare
ABZR87_RS18035 -1.1 -1.8 flagellar synthesis regulator FleN compare
ABZR87_RS06715 -1.1 -1.9 PTS sugar transporter subunit IIA compare
ABZR87_RS14415 -1.1 -0.9 hemin uptake protein HemP compare
ABZR87_RS02375 -1.1 -5.2 cytochrome c1 compare
ABZR87_RS06725 -1.1 -8.4 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS02145 -1.1 -0.7 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02215 -1.1 -4.1 flagellar protein FliT compare
ABZR87_RS05130 -1.1 -0.8 CsbD family protein compare
ABZR87_RS10835 -1.1 -3.2 ABC transporter ATP-binding protein compare
ABZR87_RS14490 -1.1 -4.4 tryptophan synthase subunit alpha compare
ABZR87_RS02150 -1.1 -1.8 lysozyme inhibitor LprI family protein compare
ABZR87_RS16080 -1.1 -1.0 P-II family nitrogen regulator compare
ABZR87_RS14955 -1.1 -2.9 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS02140 -1.1 -7.2 anthranilate synthase component I compare
ABZR87_RS11525 -1.1 -1.2 molybdopterin-binding protein compare
ABZR87_RS16270 -1.1 -1.2 cold-shock protein compare
ABZR87_RS04500 -1.1 -1.0 hypothetical protein compare
ABZR87_RS11925 -1.1 -5.8 phosphoenolpyruvate synthase compare
ABZR87_RS22915 -1.1 -5.2 glucose-6-phosphate dehydrogenase compare
ABZR87_RS02235 -1.1 -3.3 response regulator compare
ABZR87_RS04600 -1.1 -1.9 DUF4142 domain-containing protein compare
ABZR87_RS00895 -1.1 -2.6 DNA-3-methyladenine glycosylase compare
ABZR87_RS17395 -1.0 -2.4 GNAT family protein compare
ABZR87_RS09075 -1.0 -2.3 DUF3318 domain-containing protein compare
ABZR87_RS10065 -1.0 -3.2 hypothetical protein compare
ABZR87_RS14495 -1.0 -3.7 site-specific DNA-methyltransferase compare
ABZR87_RS09625 -1.0 -4.7 CobD/CbiB family protein compare
ABZR87_RS23000 -1.0 -2.6 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS02565 -1.0 -2.9 glutamate synthase subunit beta compare
ABZR87_RS02380 -1.0 -6.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS10930 -1.0 -1.3 outer membrane protein assembly factor BamB compare
ABZR87_RS08410 -1.0 -2.3 hypothetical protein compare
ABZR87_RS02590 -1.0 -4.2 3-dehydroquinate synthase compare
ABZR87_RS02850 -1.0 -1.9 elongation factor Tu compare
ABZR87_RS11065 -1.0 -4.1 nitrogen regulation protein NR(II) compare
ABZR87_RS02595 -1.0 -5.3 shikimate kinase compare
ABZR87_RS06760 -1.0 -3.4 glutaredoxin 3 compare
ABZR87_RS12345 -1.0 -0.7 dethiobiotin synthase compare
ABZR87_RS16735 -1.0 -6.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS17315 -1.0 -2.6 MarR family transcriptional regulator compare
ABZR87_RS12385 -1.0 -0.9 AraC family transcriptional regulator compare
ABZR87_RS17625 -1.0 -2.0 SDR family oxidoreductase compare
ABZR87_RS13770 -0.9 -4.9 CoA transferase subunit A compare
ABZR87_RS15755 -0.9 -2.8 ABC transporter ATP-binding protein conserved
ABZR87_RS15955 -0.9 -1.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS21375 -0.9 -1.5 DUF6566 family protein compare
ABZR87_RS00285 -0.9 -1.2 acetylornithine transaminase compare
ABZR87_RS02680 -0.9 -5.2 c-type cytochrome compare
ABZR87_RS11735 -0.9 -0.9 chitin-binding domain-containing protein compare
ABZR87_RS07625 -0.9 -1.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS06405 -0.9 -0.9 hypothetical protein compare
ABZR87_RS05510 -0.9 -1.7 glutathione S-transferase compare
ABZR87_RS01455 -0.9 -1.8 SDR family oxidoreductase compare
ABZR87_RS06710 -0.9 -5.9 glutathione synthase compare
ABZR87_RS15225 -0.9 -1.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS11650 -0.9 -2.5 ribosomal protein S18-alanine N-acetyltransferase compare
ABZR87_RS08385 -0.9 -3.0 SDR family NAD(P)-dependent oxidoreductase compare
ABZR87_RS00150 -0.9 -4.4 leucyl aminopeptidase compare
ABZR87_RS23095 -0.9 -0.9 MarR family transcriptional regulator compare
ABZR87_RS04945 -0.9 -1.0 DUF4390 domain-containing protein compare
ABZR87_RS09080 -0.9 -2.2 phage holin family protein compare
ABZR87_RS18910 -0.9 -1.4 DUF2239 family protein compare
ABZR87_RS10865 -0.9 -3.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR87_RS12945 -0.9 -2.8 GPO family capsid scaffolding protein compare
ABZR87_RS07645 -0.9 -1.5 Fis family transcriptional regulator compare
ABZR87_RS00910 -0.9 -2.4 hypothetical protein compare
ABZR87_RS08625 -0.8 -0.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS17620 -0.8 -2.6 LysR family transcriptional regulator compare
ABZR87_RS09085 -0.8 -3.5 DUF883 family protein compare
ABZR87_RS01810 -0.8 -1.3 glutamate 5-kinase compare
ABZR87_RS13315 -0.8 -3.9 RluA family pseudouridine synthase compare
ABZR87_RS11440 -0.8 -3.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS16960 -0.8 -1.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS04785 -0.8 -4.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS11495 -0.8 -1.2 NADPH-dependent FMN reductase compare
ABZR87_RS11760 -0.8 -0.5 membrane protein compare
ABZR87_RS02225 -0.8 -4.4 ATP-binding protein compare
ABZR87_RS11675 -0.8 -1.2 disulfide bond formation protein B compare
ABZR87_RS10585 -0.8 -2.7 LysR family transcriptional regulator compare
ABZR87_RS01615 -0.8 -0.7 RNB domain-containing ribonuclease compare
ABZR87_RS04120 -0.8 -2.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR87_RS06365 -0.8 -2.0 DUF1840 domain-containing protein compare
ABZR87_RS08660 -0.8 -2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS12955 -0.8 -2.7 terminase endonuclease subunit compare
ABZR87_RS00280 -0.8 -3.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
ABZR87_RS07620 -0.8 -1.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS06520 -0.8 -2.4 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Protocatechuic Acid in Ralstonia sp. UNC404CL21Col

For carbon source Protocatechuic Acid across organisms