Experiment set9IT080 for Ralstonia solanacearum GMI1000

Compare to:

water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
RS_RS05740 +2.3 0.8 LysR family transcriptional regulator compare
RS_RS19960 +2.3 1.5 MBL fold metallo-hydrolase compare
RS_RS12575 +1.6 12.1 type II toxin-antitoxin system HipA family toxin compare
RS_RS10690 +1.6 2.1 hypothetical protein compare
RS_RS05630 +1.5 1.4 hypothetical protein compare
RS_RS14095 +1.5 1.1 glutamate 5-kinase compare
RS_RS06045 +1.3 11.8 RNA polymerase sigma factor RpoS compare
RS_RS12895 +1.3 1.3 hypothetical protein compare
RS_RS19690 +1.2 0.5 Rrf2 family transcriptional regulator compare
RS_RS08450 +1.1 3.1 hypothetical protein compare
RS_RS01765 +1.1 1.5 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
RS_RS03965 +1.1 2.0 RNA-binding S4 domain-containing protein compare
RS_RS07845 +1.0 1.3 NAD(P)H:quinone oxidoreductase compare
RS_RS04740 +1.0 1.3 hypothetical protein compare
RS_RS25445 +1.0 1.6 C-5 sterol desaturase compare
RS_RS01715 +1.0 4.7 phosphoenolpyruvate--protein phosphotransferase compare
RS_RS15425 +1.0 1.7 hypothetical protein compare
RS_RS25085 +1.0 3.0 hypothetical protein compare
RS_RS18215 +1.0 1.0 LysR family transcriptional regulator compare
RS_RS01830 +0.9 1.3 protoheme IX farnesyltransferase compare
RS_RS10865 +0.9 1.2 Pyrrolidone-carboxylate peptidase 1 compare
RS_RS12100 +0.8 2.3 LysR family transcriptional regulator compare
RS_RS17960 +0.8 1.3 hypothetical protein compare
RS_RS14655 +0.8 1.6 ClpXP protease specificity-enhancing factor compare
RS_RS07540 +0.8 1.2 aldo/keto reductase compare
RS_RS04665 +0.8 6.8 cobalamin biosynthesis protein CobD compare
RS_RS12780 +0.8 2.2 nucleotide-binding protein compare
RS_RS22120 +0.8 0.7 DUF2282 domain-containing protein compare
RS_RS02985 +0.8 3.0 hypothetical protein compare
RS_RS21240 +0.8 1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
RS_RS23265 +0.8 1.2 hypothetical protein compare
RS_RS04470 +0.8 1.2 glycine zipper 2TM domain-containing protein compare
RS_RS02615 +0.8 0.6 hypothetical protein compare
RS_RS02700 +0.8 0.3 serine/threonine protein kinase compare
RS_RS05485 +0.8 1.5 diguanylate cyclase compare
RS_RS03360 +0.7 1.3 response regulator compare
RS_RS13660 +0.7 2.6 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha compare
RS_RS13295 +0.7 0.6 rhombosortase compare
RS_RS21885 +0.7 1.8 hypothetical protein compare
RS_RS11320 +0.7 2.9 IclR family transcriptional regulator compare
RS_RS12890 +0.7 2.4 metal-binding protein compare
RS_RS23060 +0.7 1.2 LLM class flavin-dependent oxidoreductase compare
RS_RS00425 +0.7 0.9 amino acid ABC transporter substrate-binding protein compare
RS_RS17930 +0.6 1.9 MbtH family protein compare
RS_RS03895 +0.6 0.8 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
RS_RS16385 +0.6 1.3 arsenate reductase (glutaredoxin) compare
RS_RS00125 +0.6 5.1 hypothetical protein compare
RS_RS24410 +0.6 3.7 helix-turn-helix transcriptional regulator compare
RS_RS04295 +0.6 0.8 hypothetical protein compare
RS_RS02765 +0.6 1.3 regulatory protein RecX compare
RS_RS07645 +0.6 1.8 RNA-binding protein compare
RS_RS12880 +0.6 1.4 DNA-3-methyladenine glycosylase 2 family protein compare
RS_RS10735 +0.6 2.8 HAD family phosphatase compare
RS_RS02120 +0.6 1.7 polysaccharide deacetylase family protein compare
RS_RS04800 +0.6 2.8 chloride channel protein EriC compare
RS_RS07460 +0.6 1.5 hypothetical protein compare
RS_RS17560 +0.6 1.7 hypothetical protein compare
RS_RS09370 +0.6 0.8 DUF1794 domain-containing protein compare
RS_RS04805 +0.6 3.1 hypothetical protein compare
RS_RS02130 +0.6 2.2 outer membrane lipoprotein carrier protein LolA compare
RS_RS16270 +0.6 1.1 hypothetical protein compare
RS_RS07450 +0.6 1.5 hypothetical protein compare
RS_RS08685 +0.6 0.7 arylesterase compare
RS_RS08410 +0.6 2.2 hypothetical protein compare
RS_RS17685 +0.6 2.0 DUF3488 domain-containing protein compare
RS_RS13210 +0.6 2.9 nucleoside diphosphate kinase regulator compare
RS_RS06690 +0.6 2.5 D-(-)-3-hydroxybutyrate oligomer hydrolase compare
RS_RS21845 +0.6 0.9 DNA-binding response regulator compare
RS_RS06185 +0.6 1.8 methyl-accepting chemotaxis protein compare
RS_RS20935 +0.6 2.5 DNA polymerase Y family protein compare
RS_RS16490 +0.6 2.0 hypothetical protein compare
RS_RS16475 +0.6 1.8 sugar-binding lectin protein compare
RS_RS10925 +0.6 1.8 BMP family ABC transporter substrate-binding protein compare
RS_RS16315 +0.6 0.9 hypothetical protein compare
RS_RS22175 +0.6 0.3 Hpt domain-containing protein compare
RS_RS12875 +0.6 1.6 DNA oxidative demethylase AlkB compare
RS_RS24920 +0.6 0.7 DUF1778 domain-containing protein compare
RS_RS08190 +0.5 0.9 DUF465 domain-containing protein compare
RS_RS08960 +0.5 1.7 GNAT family N-acetyltransferase compare
RS_RS05760 +0.5 1.1 methyl-accepting chemotaxis protein compare
RS_RS22900 +0.5 2.0 two-component sensor histidine kinase compare
RS_RS05645 +0.5 1.1 DUF455 domain-containing protein compare
RS_RS18725 +0.5 2.6 FCD domain-containing protein compare
RS_RS16260 +0.5 1.4 DUF2924 domain-containing protein compare
RS_RS11860 +0.5 1.2 membrane protein compare
RS_RS19130 +0.5 0.5 hypothetical protein compare
RS_RS18825 +0.5 1.9 flagellar L-ring protein FlgH compare
RS_RS00785 +0.5 2.1 ornithine--oxo-acid transaminase compare
RS_RS23770 +0.5 0.9 hypothetical protein compare
RS_RS04575 +0.5 2.1 methionine import ATP-binding protein MetN compare
RS_RS08300 +0.5 2.3 two-component sensor histidine kinase compare
RS_RS10945 +0.5 1.8 radical SAM protein compare
RS_RS10035 +0.5 0.8 GntR family transcriptional regulator compare
RS_RS02850 +0.5 0.6 AzlD domain-containing protein compare
RS_RS07565 +0.5 1.4 zinc-binding alcohol dehydrogenase family protein compare
RS_RS08795 +0.5 1.6 MurR/RpiR family transcriptional regulator compare
RS_RS22445 +0.5 0.9 trehalose-phosphatase compare
RS_RS19975 +0.5 1.9 chemotaxis protein CheV compare
RS_RS22335 +0.5 1.4 DUF3613 domain-containing protein compare
RS_RS16380 +0.5 1.8 hypothetical protein compare
RS_RS09015 +0.5 1.1 type 4 fimbrial biogenesis protein compare
RS_RS13330 +0.5 2.2 mechanosensitive ion channel family protein compare
RS_RS07495 +0.5 2.8 hypothetical protein compare
RS_RS09270 +0.5 0.5 NAD(P)-dependent oxidoreductase compare
RS_RS05130 +0.5 0.5 hypothetical protein compare
RS_RS13830 +0.5 1.3 DUF937 domain-containing protein compare
RS_RS06510 +0.5 1.1 tRNA dihydrouridine(20/20a) synthase DusA compare
RS_RS14690 +0.5 0.9 PDZ domain-containing protein compare
RS_RS13335 +0.5 2.4 ATP:cob(I)alamin adenosyltransferase compare
RS_RS20310 +0.5 1.9 DNA-3-methyladenine glycosylase I compare
RS_RS16750 +0.5 1.1 ABC transporter ATP-binding protein compare
RS_RS25635 +0.5 2.3 hypothetical protein compare
RS_RS00085 +0.5 3.9 DNA-binding response regulator compare
RS_RS08240 +0.5 2.4 tRNA-dihydrouridine synthase C compare
RS_RS23055 +0.5 1.0 hypothetical protein compare
RS_RS24665 +0.5 1.2 lipoprotein transmembrane compare
RS_RS22945 +0.5 1.2 hypothetical protein compare
RS_RS04565 +0.5 1.3 lytic murein transglycosylase B compare
RS_RS15585 +0.5 3.9 4-hydroxyphenylpyruvate dioxygenase compare
RS_RS25400 +0.5 0.3 hypothetical protein compare
RS_RS03240 +0.5 1.4 peptidase M48 compare
RS_RS07525 +0.5 1.5 hypothetical protein compare
RS_RS03160 +0.5 0.7 cytochrome c compare
RS_RS22395 +0.5 3.1 membrane protein compare
RS_RS02265 +0.5 1.2 DUF971 domain-containing protein compare
RS_RS22750 +0.5 1.8 hypothetical protein compare
RS_RS11350 +0.5 1.3 amino acid ABC transporter substrate-binding protein compare
RS_RS15885 +0.5 2.3 DNA-binding response regulator compare
RS_RS12290 +0.5 1.5 nicotinate-nucleotide diphosphorylase (carboxylating) compare
RS_RS07280 +0.5 0.9 type II toxin-antitoxin system HipA family toxin compare
RS_RS13700 +0.5 2.6 response regulator compare
RS_RS21950 +0.5 2.8 hypothetical protein compare
RS_RS14035 +0.5 0.7 sigma-54-dependent Fis family transcriptional regulator compare
RS_RS02555 +0.4 1.4 branched-chain amino acid ABC transporter permease compare
RS_RS12015 +0.4 2.3 threonine-phosphate decarboxylase compare
RS_RS07250 +0.4 1.8 pca operon transcription factor PcaQ compare
RS_RS24875 +0.4 1.7 transcriptional regulator compare
RS_RS11560 +0.4 1.3 hypothetical protein compare
RS_RS06905 +0.4 1.7 MurR/RpiR family transcriptional regulator compare
RS_RS18390 +0.4 1.3 hypothetical protein compare
RS_RS16920 +0.4 2.4 hypothetical protein compare
RS_RS05940 +0.4 2.1 DNA-binding response regulator compare
RS_RS16930 +0.4 1.5 hypothetical protein compare
RS_RS09845 +0.4 1.8 hypothetical protein compare
RS_RS24870 +0.4 1.6 transcriptional regulator compare
RS_RS15565 +0.4 2.0 DUF4437 domain-containing protein compare
RS_RS08650 +0.4 1.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
RS_RS20890 +0.4 2.5 alpha/beta hydrolase compare
RS_RS19870 +0.4 0.5 site-specific DNA-methyltransferase compare
RS_RS20060 +0.4 3.0 cobyrinate a,c-diamide synthase compare
RS_RS03620 +0.4 1.3 pilus assembly protein PilZ compare
RS_RS07270 +0.4 2.3 DsbA family protein compare
RS_RS17245 +0.4 3.2 YhfC family intramembrane metalloprotease compare
RS_RS12350 +0.4 0.8 YdcF family protein compare
RS_RS23150 +0.4 0.7 hypothetical protein compare
RS_RS01310 +0.4 1.5 enoyl-CoA hydratase compare
RS_RS11185 +0.4 1.0 dienelactone hydrolase family protein compare
RS_RS23920 +0.4 2.0 chemotaxis protein CheA compare
RS_RS09925 +0.4 2.0 multidrug ABC transporter permease compare
RS_RS09445 +0.4 2.0 DUF4102 domain-containing protein compare
RS_RS08470 +0.4 1.4 hypothetical protein compare
RS_RS07480 +0.4 1.7 hypothetical protein compare
RS_RS00990 +0.4 1.0 Hsp20/alpha crystallin family protein compare
RS_RS25225 +0.4 1.9 hypothetical protein compare
RS_RS00870 +0.4 1.4 hypothetical protein compare
RS_RS21965 +0.4 3.2 polysaccharide biosynthesis protein compare
RS_RS18720 +0.4 0.7 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
RS_RS02195 +0.4 1.0 hypothetical protein compare
RS_RS18780 +0.4 1.5 flagellar protein FlgN compare
RS_RS19860 +0.4 1.7 hypothetical protein compare
RS_RS09780 +0.4 1.2 hypothetical protein compare
RS_RS06505 +0.4 1.0 enoyl-CoA hydratase/isomerase family protein compare
RS_RS26075 +0.4 1.0 hypothetical protein compare
RS_RS02050 +0.4 2.5 potassium transporter compare
RS_RS14330 +0.4 2.0 ABC transporter ATP-binding protein compare
RS_RS26515 +0.4 0.3 hypothetical protein compare
RS_RS07880 +0.4 1.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
RS_RS13010 +0.4 2.2 antibiotic biosynthesis monooxygenase compare
RS_RS00640 +0.4 1.5 HPP family protein compare
RS_RS02445 +0.4 2.1 hypothetical protein compare
RS_RS11630 +0.4 1.7 alpha/beta hydrolase compare
RS_RS23845 +0.4 2.4 flagellar biosynthesis protein FlhA compare
RS_RS23885 +0.4 1.0 protein phosphatase CheZ compare
RS_RS09835 +0.4 2.1 glutamate racemase compare
RS_RS08165 +0.4 0.8 hypothetical protein compare
RS_RS03665 +0.4 0.7 transcriptional regulator NrdR compare
RS_RS00620 +0.4 1.3 hypothetical protein compare
RS_RS03675 +0.4 2.0 NAD(P)-dependent oxidoreductase compare
RS_RS10980 +0.4 0.9 uracil phosphoribosyltransferase compare
RS_RS24560 +0.4 0.7 DUF1993 domain-containing protein compare
RS_RS25550 +0.4 1.9 hypothetical protein compare
RS_RS12725 +0.4 2.5 bile acid:sodium symporter compare
RS_RS13445 +0.4 1.4 hypothetical protein compare
RS_RS02970 +0.4 2.5 hypothetical protein compare
RS_RS02325 +0.4 2.1 EEP domain-containing protein compare
RS_RS23205 +0.4 2.1 LysR family transcriptional regulator compare
RS_RS21865 +0.4 1.0 thiamine phosphate synthase compare
RS_RS19005 +0.4 1.3 flagellar export chaperone FliS compare
RS_RS24365 +0.4 2.6 DUF2249 domain-containing protein compare
RS_RS05390 +0.4 0.7 maleylacetoacetate isomerase compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum GMI1000 in survival experiments

For survival Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days across organisms