Experiment set9IT080 for Ralstonia sp. UNC404CL21Col

Compare to:

Dodecandioic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13290 -6.3 -5.3 3-ketoacyl-ACP reductase compare
ABZR87_RS14790 -6.1 -5.9 acyl-CoA dehydrogenase compare
ABZR87_RS20875 -6.0 -4.1 LysR family transcriptional regulator compare
ABZR87_RS14950 -5.9 -4.1 acetolactate synthase small subunit compare
ABZR87_RS02155 -5.9 -5.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS02160 -5.8 -4.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16660 -5.7 -5.6 helix-turn-helix domain-containing protein compare
ABZR87_RS01645 -5.6 -3.8 type II 3-dehydroquinate dehydratase compare
ABZR87_RS06955 -5.6 -8.5 pitrilysin family protein compare
ABZR87_RS16270 -5.6 -1.9 cold-shock protein compare
ABZR87_RS05200 -5.4 -14.5 homoserine O-acetyltransferase compare
ABZR87_RS07360 -5.4 -12.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS06770 -5.4 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS14800 -5.3 -8.4 DUF1178 family protein compare
ABZR87_RS05305 -5.2 -7.2 TetR family transcriptional regulator compare
ABZR87_RS20880 -5.2 -6.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS14500 -5.2 -12.1 tryptophan synthase subunit beta compare
ABZR87_RS17310 -5.2 -7.1 PadR family transcriptional regulator compare
ABZR87_RS08630 -5.2 -6.1 dihydroorotase compare
ABZR87_RS00355 -5.1 -9.1 quinolinate synthase NadA compare
ABZR87_RS02565 -5.1 -4.9 glutamate synthase subunit beta compare
ABZR87_RS02640 -5.1 -15.9 diaminopimelate decarboxylase compare
ABZR87_RS12585 -5.0 -9.0 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS00200 -5.0 -4.9 phosphoadenylyl-sulfate reductase compare
ABZR87_RS14795 -5.0 -10.7 acyl-CoA dehydrogenase family protein compare
ABZR87_RS02570 -5.0 -20.3 glutamate synthase-related protein compare
ABZR87_RS14530 -5.0 -6.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS06950 -5.0 -10.0 pitrilysin family protein compare
ABZR87_RS04785 -4.9 -11.0 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS00190 -4.9 -9.4 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS14490 -4.9 -6.7 tryptophan synthase subunit alpha compare
ABZR87_RS00195 -4.9 -6.7 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS15790 -4.9 -4.7 3-oxoadipyl-CoA thiolase compare
ABZR87_RS02595 -4.9 -9.9 shikimate kinase compare
ABZR87_RS01810 -4.9 -3.3 glutamate 5-kinase compare
ABZR87_RS09450 -4.8 -8.7 prephenate dehydratase compare
ABZR87_RS16170 -4.8 -3.3 argininosuccinate lyase compare
ABZR87_RS13250 -4.8 -4.4 phosphoserine phosphatase SerB compare
ABZR87_RS01110 -4.8 -9.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS22970 -4.8 -12.8 cystathionine gamma-synthase family protein compare
ABZR87_RS09465 -4.8 -6.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS09445 -4.8 -11.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS12575 -4.8 -6.5 acetyl-CoA C-acyltransferase compare
ABZR87_RS02140 -4.8 -16.9 anthranilate synthase component I compare
ABZR87_RS00605 -4.6 -10.3 hypothetical protein compare
ABZR87_RS02145 -4.5 -3.0 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13790 -4.5 -8.1 chorismate synthase compare
ABZR87_RS11625 -4.4 -11.3 malate synthase A compare
ABZR87_RS11940 -4.4 -3.0 SsrA-binding protein SmpB compare
ABZR87_RS04975 -4.4 -3.0 peptide deformylase compare
ABZR87_RS00350 -4.3 -7.6 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS02020 -4.3 -14.7 long-chain fatty acid--CoA ligase compare
ABZR87_RS17650 -4.2 -9.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16125 -4.2 -5.8 heme biosynthesis protein HemY compare
ABZR87_RS14890 -4.2 -1.5 preprotein translocase subunit SecG compare
ABZR87_RS05350 -4.2 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00205 -4.2 -4.1 DUF934 domain-containing protein compare
ABZR87_RS02150 -4.2 -3.5 lysozyme inhibitor LprI family protein compare
ABZR87_RS14540 -4.2 -7.5 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS00345 -4.2 -14.4 L-aspartate oxidase compare
ABZR87_RS00220 -4.1 -12.2 CysB family HTH-type transcriptional regulator compare
ABZR87_RS07380 -4.1 -10.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS01605 -4.0 -11.0 shikimate dehydrogenase compare
ABZR87_RS11440 -4.0 -8.9 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS11390 -4.0 -13.6 PhoH family protein compare
ABZR87_RS02590 -4.0 -9.9 3-dehydroquinate synthase compare
ABZR87_RS14505 -4.0 -6.3 phosphoribosylanthranilate isomerase compare
ABZR87_RS09935 -4.0 -3.8 amino acid aminotransferase compare
ABZR87_RS05100 -4.0 -6.6 RNA polymerase-binding protein DksA compare
ABZR87_RS00210 -3.9 -8.4 nitrite/sulfite reductase compare
ABZR87_RS14535 -3.9 -6.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS16180 -3.9 -2.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS04125 -3.9 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS05170 -3.8 -2.7 acetylglutamate kinase compare
ABZR87_RS11815 -3.8 -14.5 [protein-PII] uridylyltransferase compare
ABZR87_RS00285 -3.8 -2.6 acetylornithine transaminase compare
ABZR87_RS09710 -3.7 -4.8 tRNA-Arg compare
ABZR87_RS00185 -3.7 -3.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00435 -3.7 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13415 -3.7 -5.1 IclR family transcriptional regulator compare
ABZR87_RS02440 -3.7 -9.8 twin-arginine translocase subunit TatC compare
ABZR87_RS07760 -3.7 -3.9 HlyC/CorC family transporter compare
ABZR87_RS06400 -3.6 -9.3 response regulator transcription factor compare
ABZR87_RS11015 -3.6 -8.3 amino-acid N-acetyltransferase compare
ABZR87_RS00835 -3.6 -6.4 argininosuccinate synthase compare
ABZR87_RS21795 -3.5 -8.7 NUDIX domain-containing protein compare
ABZR87_RS02380 -3.5 -15.7 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS13285 -3.5 -13.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS04865 -3.5 -3.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS14955 -3.5 -6.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS02445 -3.5 -6.3 Sec-independent protein translocase protein TatB compare
ABZR87_RS10565 -3.5 -3.4 cupin domain-containing protein compare
ABZR87_RS11195 -3.4 -13.1 pseudouridine synthase compare
ABZR87_RS13300 -3.4 -8.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07625 -3.3 -4.4 Holliday junction branch migration protein RuvA compare
ABZR87_RS20865 -3.3 -5.5 acyl-CoA dehydrogenase family protein compare
ABZR87_RS00360 -3.2 -2.2 acyl-CoA desaturase compare
ABZR87_RS10610 -3.2 -2.1 inositol monophosphatase family protein compare
ABZR87_RS20870 -3.2 -10.2 LysR family transcriptional regulator compare
ABZR87_RS14655 -3.2 -10.0 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS10820 -3.1 -6.3 LysR substrate-binding domain-containing protein compare
ABZR87_RS14115 -3.1 -3.6 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS09635 -3.1 -2.1 ribosome small subunit-dependent GTPase A compare
ABZR87_RS10170 -3.1 -5.8 RseA family anti-sigma factor compare
ABZR87_RS15685 -3.1 -7.4 TIGR00730 family Rossman fold protein compare
ABZR87_RS08625 -3.0 -2.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS14380 -3.0 -5.8 glutamate racemase compare
ABZR87_RS10240 -3.0 -2.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS05000 -2.9 -16.4 LysR family transcriptional regulator compare
ABZR87_RS11245 -2.9 -6.7 translational GTPase TypA compare
ABZR87_RS02375 -2.9 -12.5 cytochrome c1 compare
ABZR87_RS18910 -2.8 -2.7 DUF2239 family protein compare
ABZR87_RS12345 -2.8 -1.3 dethiobiotin synthase compare
ABZR87_RS02555 -2.8 -9.5 ABC transporter ATP-binding protein compare
ABZR87_RS09625 -2.8 -11.0 CobD/CbiB family protein compare
ABZR87_RS02235 -2.7 -7.0 response regulator compare
ABZR87_RS02680 -2.7 -11.1 c-type cytochrome compare
ABZR87_RS10120 -2.6 -2.0 YceD family protein compare
ABZR87_RS01615 -2.6 -1.1 RNB domain-containing ribonuclease compare
ABZR87_RS05590 -2.6 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS00875 -2.5 -5.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS10780 -2.5 -6.3 PD-(D/E)XK nuclease family protein compare
ABZR87_RS06845 -2.5 -10.8 heme o synthase compare
ABZR87_RS02545 -2.5 -8.9 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS09615 -2.5 -1.4 50S ribosomal protein L19 compare
ABZR87_RS16185 -2.5 -2.9 dCTP deaminase compare
ABZR87_RS08660 -2.5 -7.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS02385 -2.5 -5.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS20665 -2.5 -5.9 IclR family transcriptional regulator compare
ABZR87_RS16080 -2.4 -2.5 P-II family nitrogen regulator compare
ABZR87_RS06385 -2.4 -8.9 CHASE3 domain-containing protein compare
ABZR87_RS11065 -2.4 -8.0 nitrogen regulation protein NR(II) compare
ABZR87_RS09460 -2.4 -6.8 prephenate dehydrogenase compare
ABZR87_RS17315 -2.4 -5.5 MarR family transcriptional regulator compare
ABZR87_RS02225 -2.3 -11.4 ATP-binding protein compare
ABZR87_RS03960 -2.3 -9.5 cation:proton antiporter compare
ABZR87_RS16250 -2.3 -4.3 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS02575 -2.3 -7.5 transposase compare
ABZR87_RS02550 -2.3 -5.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS06810 -2.3 -8.3 cytochrome c oxidase assembly protein compare
ABZR87_RS10870 -2.3 -7.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS12790 -2.3 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS12785 -2.2 -1.5 endopeptidase La compare
ABZR87_RS10175 -2.2 -6.2 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS07635 -2.2 -3.6 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS04940 -2.2 -5.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS12340 -2.2 -11.3 8-amino-7-oxononanoate synthase compare
ABZR87_RS02540 -2.2 -8.3 VacJ family lipoprotein compare
ABZR87_RS08070 -2.1 -1.8 pyruvate kinase compare
ABZR87_RS06705 -2.1 -12.5 glutamate--cysteine ligase compare
ABZR87_RS23095 -2.1 -1.6 MarR family transcriptional regulator compare
ABZR87_RS06745 -2.1 -5.0 S41 family peptidase compare
ABZR87_RS00215 -2.1 -3.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS00965 -2.0 -11.5 bifunctional anthranilate synthase component I family protein/class IV aminotransferase compare
ABZR87_RS04120 -2.0 -4.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR87_RS02850 -2.0 -2.7 elongation factor Tu compare
ABZR87_RS06265 -2.0 -7.4 biotin synthase BioB compare
ABZR87_RS06715 -2.0 -3.8 PTS sugar transporter subunit IIA compare
ABZR87_RS07620 -2.0 -4.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS02480 -1.9 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS01675 -1.9 -2.6 carbohydrate kinase family protein compare
ABZR87_RS12795 -1.9 -5.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS01035 -1.9 -4.9 histidine utilization repressor compare
ABZR87_RS09085 -1.9 -7.2 DUF883 family protein compare
ABZR87_RS08670 -1.9 -8.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS13445 -1.8 -4.6 phasin family protein compare
ABZR87_RS15795 -1.8 -3.2 CoA transferase subunit B compare
ABZR87_RS08655 -1.8 -4.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS10785 -1.8 -6.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS16735 -1.8 -11.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS06645 -1.8 -1.7 TlpA disulfide reductase family protein compare
ABZR87_RS06825 -1.8 -1.7 twin transmembrane helix small protein compare
ABZR87_RS02535 -1.7 -5.6 phospholipid-binding protein MlaC compare
ABZR87_RS16730 -1.7 -5.4 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS16960 -1.7 -4.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS11070 -1.7 -8.6 nitrogen regulation protein NR(I) compare
ABZR87_RS12735 -1.7 -7.9 winged helix DNA-binding protein compare
ABZR87_RS14575 -1.7 -4.4 GntR family transcriptional regulator compare
ABZR87_RS12275 -1.7 -3.9 LysR family transcriptional regulator compare
ABZR87_RS06405 -1.6 -1.5 hypothetical protein compare
ABZR87_RS13315 -1.6 -6.3 RluA family pseudouridine synthase compare
ABZR87_RS18190 -1.6 -2.0 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS03565 -1.6 -7.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07510 -1.6 -4.2 LysR family transcriptional regulator compare
ABZR87_RS12800 -1.6 -4.5 trigger factor compare
ABZR87_RS12580 -1.5 -3.5 bifunctional nicotinamidase/pyrazinamidase compare
ABZR87_RS01055 -1.5 -6.2 heat-inducible transcriptional repressor HrcA compare
ABZR87_RS10065 -1.5 -5.6 hypothetical protein compare
ABZR87_RS04945 -1.5 -2.2 DUF4390 domain-containing protein compare
ABZR87_RS21285 -1.5 -1.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06710 -1.5 -10.2 glutathione synthase compare
ABZR87_RS23180 -1.5 -1.2 ABC transporter ATP-binding protein compare
ABZR87_RS03955 -1.5 -8.5 YbdK family carboxylate-amine ligase compare
ABZR87_RS22300 -1.5 -1.1 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS06800 -1.5 -10.4 cytochrome c oxidase subunit I compare
ABZR87_RS08950 -1.5 -3.1 transcriptional regulator NrdR compare
ABZR87_RS14675 -1.5 -0.8 glyoxalase compare
ABZR87_RS15650 -1.4 -8.9 aromatic ring-hydroxylating dioxygenase subunit alpha compare
ABZR87_RS15440 -1.4 -3.4 ribonuclease G compare
ABZR87_RS22930 -1.4 -5.0 universal stress protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Dodecandioic acid in Ralstonia sp. UNC404CL21Col

For carbon source Dodecandioic acid across organisms