Experiment set9IT079 for Ralstonia solanacearum IBSBF1503

Compare to:

Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

200 most important genes:

  gene name fitness t score description  
RALBFv3_RS12700 -3.5 -1.7 lipopolysaccharide heptosyltransferase I compare
RALBFv3_RS14010 -3.2 -3.1 tRNA-Arg compare
RALBFv3_RS21785 -3.2 -0.9 hypothetical protein compare
RALBFv3_RS14895 -3.1 -0.9 outer membrane protein assembly factor BamC compare
RALBFv3_RS19465 -3.1 -0.9 lactoylglutathione lyase compare
RALBFv3_RS10690 -2.9 -4.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
RALBFv3_RS10920 -2.8 -0.8 glycerol-3-phosphate dehydrogenase compare
RALBFv3_RS09535 -2.6 -11.5 homoserine O-acetyltransferase compare
RALBFv3_RS19145 -2.5 -3.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
RALBFv3_RS19810 -2.5 -1.8 TetR/AcrR family transcriptional regulator compare
RALBFv3_RS19100 -2.5 -4.9 multidrug MFS transporter compare
RALBFv3_RS12475 -2.5 -8.6 MFS transporter compare
RALBFv3_RS15310 -2.4 -2.2 FtsH protease activity modulator HflK compare
RALBFv3_RS18660 -2.4 -12.3 fructosidase compare
RALBFv3_RS03470 -2.4 -1.7 hypothetical protein compare
RALBFv3_RS06190 -2.4 -1.1 prepilin peptidase compare
RALBFv3_RS16385 -2.4 -4.2 phosphogluconate dehydratase compare
RALBFv3_RS22185 -2.4 -10.1 glucan biosynthesis protein D compare
RALBFv3_RS22965 -2.3 -13.0 hypothetical protein compare
RALBFv3_RS02460 -2.3 -1.5 fumarate hydratase compare
RALBFv3_RS21750 -2.3 -1.3 flagellar biosynthesis anti-sigma factor FlgM compare
RALBFv3_RS16275 -2.3 -12.6 hypothetical protein compare
RALBFv3_RS20445 -2.3 -2.8 YciI family protein compare
RALBFv3_RS01490 -2.3 -5.7 polyhydroxyalkanoate synthesis repressor PhaR compare
RALBFv3_RS08675 -2.2 -11.0 hypothetical protein compare
RALBFv3_RS16390 -2.2 -10.9 glucose-6-phosphate dehydrogenase compare
RALBFv3_RS02165 -2.2 -1.1 ATP-dependent zinc metalloprotease FtsH compare
RALBFv3_RS04505 -2.1 -0.6 cell division protein ZapA compare
RALBFv3_RS11420 -2.1 -8.9 FAD-linked oxidase compare
RALBFv3_RS13815 -2.1 -3.1 ADP-glyceromanno-heptose 6-epimerase compare
RALBFv3_RS13755 -2.1 -5.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
RALBFv3_RS19960 -2.1 -0.6 hypothetical protein compare
RALBFv3_RS23105 -2.0 -1.0 chemotaxis protein CheY compare
RALBFv3_RS02720 -2.0 -1.0 peroxide stress protein YaaA compare
RALBFv3_RS15860 -2.0 -0.9 UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase compare
RALBFv3_RS04610 -1.9 -2.6 CysB family HTH-type transcriptional regulator compare
RALBFv3_RS18670 -1.9 -5.1 phosphoenolpyruvate--protein phosphotransferase compare
RALBFv3_RS20535 -1.9 -2.1 GTP-binding protein compare
RALBFv3_RS10500 -1.9 -1.7 2-hydroxychromene-2-carboxylate isomerase compare
RALBFv3_RS10055 -1.9 -1.4 lauroyl acyltransferase compare
RALBFv3_RS15945 -1.8 -0.7 XRE family transcriptional regulator compare
RALBFv3_RS18135 -1.8 -1.4 two-component sensor histidine kinase compare
RALBFv3_RS01455 -1.8 -1.0 phosphoserine phosphatase SerB compare
RALBFv3_RS15825 -1.8 -1.9 peroxiredoxin compare
RALBFv3_RS13885 -1.8 -1.4 NINE protein compare
RALBFv3_RS17690 -1.8 -0.9 hypothetical protein compare
RALBFv3_RS21465 -1.8 -0.9 RNA polymerase sigma factor compare
RALBFv3_RS13840 -1.8 -2.6 methionine ABC transporter ATP-binding protein compare
RALBFv3_RS00770 -1.8 -0.8 muconolactone delta-isomerase compare
RALBFv3_RS19665 -1.8 -2.0 leucine-rich repeat domain-containing protein compare
RALBFv3_RS04960 -1.7 -3.3 hypothetical protein compare
RALBFv3_RS06230 -1.7 -0.5 M23 family peptidase compare
RALBFv3_RS08655 -1.7 -2.1 glycine cleavage system protein H compare
RALBFv3_RS02305 -1.7 -4.1 formyltetrahydrofolate deformylase compare
RALBFv3_RS10985 -1.7 -1.5 heme A synthase compare
RALBFv3_RS18655 -1.7 -4.1 PTS sugar transporter compare
RALBFv3_RS21230 -1.7 -0.7 hypothetical protein compare
RALBFv3_RS21820 -1.7 -1.7 organic hydroperoxide resistance protein compare
RALBFv3_RS19140 -1.7 -4.7 acetyltransferase compare
RALBFv3_RS01535 -1.7 -1.0 DUF465 domain-containing protein compare
RALBFv3_RS09940 -1.7 -5.5 phosphomethylpyrimidine synthase ThiC compare
RALBFv3_RS08565 -1.7 -0.8 type II toxin-antitoxin system RelE/ParE family toxin compare
RALBFv3_RS01050 -1.7 -1.6 NAD(P)-dependent oxidoreductase compare
RALBFv3_RS24055 -1.6 -1.0 hypothetical protein compare
RALBFv3_RS02620 -1.6 -2.0 3-isopropylmalate dehydratase large subunit compare
RALBFv3_RS21495 -1.6 -1.5 hypothetical protein compare
RALBFv3_RS04190 -1.6 -4.3 NAD+ synthase compare
RALBFv3_RS24270 -1.6 -1.0 hypothetical protein compare
RALBFv3_RS21245 -1.6 -3.3 efflux RND transporter periplasmic adaptor subunit compare
RALBFv3_RS19110 -1.5 -4.4 transferase compare
RALBFv3_RS21240 -1.5 -7.0 CusA/CzcA family heavy metal efflux RND transporter compare
RALBFv3_RS13195 -1.5 -1.9 tripartite tricarboxylate transporter TctB family protein compare
RALBFv3_RS11435 -1.5 -0.8 DUF971 domain-containing protein compare
RALBFv3_RS11780 -1.5 -0.4 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
RALBFv3_RS07005 -1.5 -2.2 membrane protein compare
RALBFv3_RS13750 -1.5 -1.4 DUF2059 domain-containing protein compare
RALBFv3_RS13670 -1.5 -9.8 sel1 repeat family protein compare
RALBFv3_RS12620 -1.5 -1.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
RALBFv3_RS07425 -1.5 -1.8 N-acylglucosamine 2-epimerase compare
RALBFv3_RS01070 -1.5 -1.2 4-hydroxybutyrate dehydrogenase compare
RALBFv3_RS04240 -1.5 -1.1 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
RALBFv3_RS01505 -1.5 -4.2 class I poly(R)-hydroxyalkanoic acid synthase compare
RALBFv3_RS24510 -1.5 -0.7 hypothetical protein compare
RALBFv3_RS21535 -1.5 -1.2 hypothetical protein compare
RALBFv3_RS00485 -1.5 -2.4 SPFH/Band 7/PHB domain protein compare
RALBFv3_RS00640 -1.5 -0.6 hypothetical protein compare
RALBFv3_RS05945 -1.5 -3.8 shikimate dehydrogenase compare
RALBFv3_RS09285 -1.4 -1.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
RALBFv3_RS11530 -1.4 -2.5 enoyl-CoA hydratase compare
RALBFv3_RS10835 -1.4 -1.6 hypothetical protein compare
RALBFv3_RS11605 -1.4 -3.3 OsmC family protein compare
RALBFv3_RS00505 -1.4 -0.7 DUF4124 domain-containing protein compare
RALBFv3_RS18650 -1.4 -3.5 LacI family transcriptional regulator compare
RALBFv3_RS15750 -1.4 -1.1 cupin compare
RALBFv3_RS08985 -1.4 -2.3 Lrp/AsnC family transcriptional regulator compare
RALBFv3_RS08765 -1.4 -3.7 LysR family transcriptional regulator compare
RALBFv3_RS20655 -1.4 -0.9 1,2-phenylacetyl-CoA epoxidase subunit B compare
RALBFv3_RS06655 -1.4 -1.6 cytochrome o ubiquinol oxidase subunit I compare
RALBFv3_RS05690 -1.4 -0.7 preprotein translocase subunit YajC compare
RALBFv3_RS10315 -1.4 -0.9 RNA 3'-terminal phosphate cyclase compare
RALBFv3_RS01620 -1.3 -1.8 D-alanyl-D-alanine endopeptidase compare
RALBFv3_RS01300 -1.3 -0.6 glucose-6-phosphate isomerase compare
RALBFv3_RS15870 -1.3 -2.9 pyridoxal phosphate-dependent aminotransferase compare
RALBFv3_RS08940 -1.3 -1.3 ABC transporter ATP-binding protein compare
RALBFv3_RS09680 -1.3 -0.6 DUF484 domain-containing protein compare
RALBFv3_RS19125 -1.3 -3.7 threonine dehydrogenase-zn-dependent dehydrogenase compare
RALBFv3_RS13760 -1.3 -3.6 chorismate mutase compare
RALBFv3_RS06055 -1.3 -2.1 Lrp/AsnC family transcriptional regulator compare
RALBFv3_RS13810 -1.3 -0.6 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
RALBFv3_RS19165 -1.3 -0.7 hypothetical protein compare
RALBFv3_RS21860 -1.3 -0.5 hypothetical protein compare
RALBFv3_RS10435 -1.3 -3.4 hydroxymethylglutaryl-CoA lyase compare
RALBFv3_RS09875 -1.3 -1.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
RALBFv3_RS17635 -1.3 -1.6 adenosylmethionine decarboxylase compare
RALBFv3_RS18665 -1.3 -6.6 porin LamB compare
RALBFv3_RS17640 -1.3 -1.5 chemotaxis protein compare
RALBFv3_RS19120 -1.3 -4.7 dehydrogenase compare
RALBFv3_RS06540 -1.2 -0.6 thiol:disulfide interchange protein compare
RALBFv3_RS05025 -1.2 -1.1 oxidoreductase compare
RALBFv3_RS08620 -1.2 -2.0 hypothetical protein compare
RALBFv3_RS11720 -1.2 -4.5 nucleotidyltransferase family protein compare
RALBFv3_RS23585 -1.2 -0.9 hypothetical protein compare
RALBFv3_RS14780 -1.2 -1.8 transglutaminase family protein compare
RALBFv3_RS02220 -1.2 -0.9 SAM-dependent methyltransferase compare
RALBFv3_RS15270 -1.2 -0.6 DUF4115 domain-containing protein compare
RALBFv3_RS09845 -1.2 -0.8 multifunctional CCA addition/repair protein compare
RALBFv3_RS00100 -1.2 -2.4 CysB family HTH-type transcriptional regulator compare
RALBFv3_RS08715 -1.2 -5.6 potassium transporter Kef compare
RALBFv3_RS15390 -1.2 -0.7 oxidoreductase compare
RALBFv3_RS18210 -1.2 -0.6 hypothetical protein compare
RALBFv3_RS14925 -1.2 -1.8 LysR family transcriptional regulator compare
RALBFv3_RS19900 -1.2 -1.6 hypothetical protein compare
RALBFv3_RS24620 -1.2 -1.2 hypothetical protein compare
RALBFv3_RS20215 -1.2 -2.9 FAD-dependent oxidoreductase compare
RALBFv3_RS20605 -1.2 -0.7 PaaI family thioesterase compare
RALBFv3_RS20690 -1.2 -1.3 chemotaxis protein CheV compare
RALBFv3_RS19765 -1.1 -1.8 LysR family transcriptional regulator compare
RALBFv3_RS03565 -1.1 -0.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
RALBFv3_RS05210 -1.1 -2.0 membrane protein compare
RALBFv3_RS20980 -1.1 -0.8 hypothetical protein compare
RALBFv3_RS13305 -1.1 -0.7 transcriptional regulator compare
RALBFv3_RS12685 -1.1 -6.2 glycosyl transferase compare
RALBFv3_RS22270 -1.1 -4.4 peroxiredoxin compare
RALBFv3_RS12855 -1.1 -2.6 hypothetical protein compare
RALBFv3_RS04180 -1.1 -1.0 nitrogen regulatory protein P-II 1 compare
RALBFv3_RS15335 -1.1 -1.0 phosphoribosyltransferase compare
RALBFv3_RS04675 -1.1 -1.7 ABC transporter ATP-binding protein compare
RALBFv3_RS09605 -1.1 -1.3 copper chaperone PCu(A)C compare
RALBFv3_RS11645 -1.1 -0.7 D-tyrosyl-tRNA(Tyr) deacylase compare
RALBFv3_RS09075 -1.1 -2.4 acylphosphatase compare
RALBFv3_RS14910 -1.1 -1.5 peptidylprolyl isomerase compare
RALBFv3_RS13890 -1.1 -2.3 hypothetical protein compare
RALBFv3_RS06690 -1.1 -1.5 sensor histidine kinase compare
RALBFv3_RS23380 -1.1 -3.7 hypothetical protein compare
RALBFv3_RS17615 -1.1 -1.3 DUF350 domain-containing protein compare
RALBFv3_RS10265 -1.1 -1.9 zinc ribbon domain-containing protein compare
RALBFv3_RS19390 -1.1 -1.8 XRE family transcriptional regulator compare
RALBFv3_RS16315 -1.1 -1.1 amino acid ABC transporter substrate-binding protein compare
RALBFv3_RS02185 -1.1 -0.5 transcription elongation factor GreA compare
RALBFv3_RS10990 -1.1 -1.1 protoheme IX farnesyltransferase compare
RALBFv3_RS00410 -1.1 -1.7 RIP metalloprotease RseP compare
RALBFv3_RS06785 -1.1 -1.7 twin-arginine translocase subunit TatC compare
RALBFv3_RS04215 -1.1 -0.7 NAD(P)-dependent oxidoreductase compare
RALBFv3_RS11725 -1.1 -1.5 branched-chain amino acid transporter compare
RALBFv3_RS07590 -1.0 -1.2 DUF1484 domain-containing protein compare
RALBFv3_RS03860 -1.0 -1.4 3-oxoadipyl-CoA thiolase compare
RALBFv3_RS21310 -1.0 -1.1 DUF3005 domain-containing protein compare
RALBFv3_RS06615 -1.0 -1.7 glucan biosynthesis protein D compare
RALBFv3_RS13725 -1.0 -3.9 phosphoglycolate phosphatase compare
RALBFv3_RS10955 -1.0 -1.7 cytochrome c oxidase assembly protein compare
RALBFv3_RS08710 -1.0 -3.5 glutamate--cysteine ligase compare
RALBFv3_RS04150 -1.0 -0.6 hypothetical protein compare
RALBFv3_RS11970 -1.0 -1.3 hypothetical protein compare
RALBFv3_RS03555 -1.0 -1.6 nicotinate-nucleotide adenylyltransferase compare
RALBFv3_RS05805 -1.0 -2.7 hybrid sensor histidine kinase/response regulator compare
RALBFv3_RS08980 -1.0 -1.6 lysoplasmalogenase compare
RALBFv3_RS20320 -1.0 -4.4 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
RALBFv3_RS02125 -1.0 -1.7 phosphate regulon transcriptional regulatory protein PhoB compare
RALBFv3_RS01520 -1.0 -0.6 RluA family pseudouridine synthase compare
RALBFv3_RS24785 -1.0 -0.6 hypothetical protein compare
RALBFv3_RS10485 -1.0 -1.4 hypothetical protein compare
RALBFv3_RS20275 -1.0 -2.7 EamA/RhaT family transporter compare
RALBFv3_RS20985 -1.0 -1.8 translation initiation factor IF-1 compare
RALBFv3_RS15235 -1.0 -1.1 RNA polymerase sigma factor RpoS compare
RALBFv3_RS21250 -1.0 -2.1 TolC family protein compare
RALBFv3_RS09400 -1.0 -2.9 membrane protein insertion efficiency factor YidD compare
RALBFv3_RS16715 -1.0 -2.5 Crp/Fnr family transcriptional regulator compare
RALBFv3_RS15805 -1.0 -1.7 inorganic phosphate transporter compare
RALBFv3_RS15815 -1.0 -1.3 hypothetical protein compare
RALBFv3_RS16850 -1.0 -2.4 alpha/beta hydrolase compare
RALBFv3_RS01615 -1.0 -1.1 IclR family transcriptional regulator compare
RALBFv3_RS17865 -1.0 -1.6 DeoR/GlpR transcriptional regulator compare
RALBFv3_RS21475 -1.0 -0.7 transcriptional regulator compare
RALBFv3_RS04945 -1.0 -2.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
RALBFv3_RS24220 -1.0 -1.5 hypothetical protein compare
RALBFv3_RS02150 -1.0 -1.9 phosphate ABC transporter substrate-binding protein PstS compare
RALBFv3_RS15210 -0.9 -1.5 alkene reductase compare
RALBFv3_RS19555 -0.9 -1.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
RALBFv3_RS22440 -0.9 -0.9 hypothetical protein compare
RALBFv3_RS00115 -0.9 -1.7 sensor histidine kinase compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum IBSBF1503 in in planta experiments

For in planta Plant=Tomato_C42I; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted across organisms