Experiment set9IT079 for Ralstonia sp. UNC404CL21Col

Compare to:

Sebacic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14795 -6.6 -9.1 acyl-CoA dehydrogenase family protein compare
ABZR87_RS14790 -6.4 -7.6 acyl-CoA dehydrogenase compare
ABZR87_RS13250 -6.4 -4.4 phosphoserine phosphatase SerB compare
ABZR87_RS02160 -6.3 -4.4 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16660 -6.1 -5.9 helix-turn-helix domain-containing protein compare
ABZR87_RS12585 -6.0 -7.2 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS14535 -5.9 -7.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS01110 -5.9 -7.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02570 -5.7 -22.5 glutamate synthase-related protein compare
ABZR87_RS02640 -5.7 -16.8 diaminopimelate decarboxylase compare
ABZR87_RS14505 -5.7 -5.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS00190 -5.7 -9.5 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS14540 -5.7 -6.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02595 -5.7 -10.2 shikimate kinase compare
ABZR87_RS14530 -5.6 -6.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS20875 -5.6 -8.5 LysR family transcriptional regulator compare
ABZR87_RS16080 -5.5 -4.8 P-II family nitrogen regulator compare
ABZR87_RS00200 -5.5 -5.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS01645 -5.5 -6.5 type II 3-dehydroquinate dehydratase compare
ABZR87_RS14500 -5.5 -15.4 tryptophan synthase subunit beta compare
ABZR87_RS01810 -5.4 -3.7 glutamate 5-kinase compare
ABZR87_RS16170 -5.4 -3.7 argininosuccinate lyase compare
ABZR87_RS05200 -5.3 -19.9 homoserine O-acetyltransferase compare
ABZR87_RS20880 -5.3 -9.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS07360 -5.3 -15.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09465 -5.3 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02140 -5.2 -19.8 anthranilate synthase component I compare
ABZR87_RS14950 -5.2 -5.9 acetolactate synthase small subunit compare
ABZR87_RS13790 -5.2 -9.9 chorismate synthase compare
ABZR87_RS14490 -5.1 -10.4 tryptophan synthase subunit alpha compare
ABZR87_RS02145 -5.1 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02565 -5.1 -6.9 glutamate synthase subunit beta compare
ABZR87_RS08630 -4.9 -10.0 dihydroorotase compare
ABZR87_RS05305 -4.9 -14.4 TetR family transcriptional regulator compare
ABZR87_RS00220 -4.9 -14.7 CysB family HTH-type transcriptional regulator compare
ABZR87_RS22970 -4.8 -13.8 cystathionine gamma-synthase family protein compare
ABZR87_RS09445 -4.8 -14.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS05100 -4.8 -7.3 RNA polymerase-binding protein DksA compare
ABZR87_RS00210 -4.7 -10.0 nitrite/sulfite reductase compare
ABZR87_RS15790 -4.6 -6.3 3-oxoadipyl-CoA thiolase compare
ABZR87_RS02020 -4.6 -16.4 long-chain fatty acid--CoA ligase compare
ABZR87_RS00435 -4.5 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS06770 -4.5 -8.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS00835 -4.5 -6.1 argininosuccinate synthase compare
ABZR87_RS07380 -4.3 -15.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS10565 -4.3 -3.0 cupin domain-containing protein compare
ABZR87_RS02590 -4.3 -13.3 3-dehydroquinate synthase compare
ABZR87_RS09710 -4.3 -5.7 tRNA-Arg compare
ABZR87_RS14955 -4.3 -5.8 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00355 -4.2 -14.0 quinolinate synthase NadA compare
ABZR87_RS13415 -4.2 -6.9 IclR family transcriptional regulator compare
ABZR87_RS04865 -4.1 -4.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS05350 -4.0 -6.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS14115 -4.0 -4.5 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS17310 -4.0 -9.1 PadR family transcriptional regulator compare
ABZR87_RS16125 -4.0 -7.9 heme biosynthesis protein HemY compare
ABZR87_RS05170 -3.9 -5.4 acetylglutamate kinase compare
ABZR87_RS00205 -3.9 -4.2 DUF934 domain-containing protein compare
ABZR87_RS20870 -3.9 -11.9 LysR family transcriptional regulator compare
ABZR87_RS09935 -3.9 -5.9 amino acid aminotransferase compare
ABZR87_RS00285 -3.9 -3.7 acetylornithine transaminase compare
ABZR87_RS11440 -3.8 -8.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS11625 -3.8 -9.1 malate synthase A compare
ABZR87_RS00185 -3.8 -5.2 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS02155 -3.8 -8.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS20865 -3.8 -6.7 acyl-CoA dehydrogenase family protein compare
ABZR87_RS00350 -3.8 -9.4 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS13285 -3.7 -13.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS00195 -3.7 -4.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS09635 -3.6 -2.5 ribosome small subunit-dependent GTPase A compare
ABZR87_RS05590 -3.6 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS14800 -3.6 -6.4 DUF1178 family protein compare
ABZR87_RS08625 -3.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS04125 -3.5 -9.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS09450 -3.4 -7.6 prephenate dehydratase compare
ABZR87_RS01615 -3.3 -3.2 RNB domain-containing ribonuclease compare
ABZR87_RS02445 -3.3 -7.0 Sec-independent protein translocase protein TatB compare
ABZR87_RS02440 -3.3 -12.9 twin-arginine translocase subunit TatC compare
ABZR87_RS06845 -3.2 -12.6 heme o synthase compare
ABZR87_RS10240 -3.2 -3.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS02380 -3.2 -15.8 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS16270 -3.1 -2.7 cold-shock protein compare
ABZR87_RS08660 -3.1 -8.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS02480 -3.0 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS08655 -3.0 -4.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS11940 -3.0 -5.3 SsrA-binding protein SmpB compare
ABZR87_RS00875 -3.0 -6.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS13290 -3.0 -7.7 3-ketoacyl-ACP reductase compare
ABZR87_RS02375 -3.0 -11.7 cytochrome c1 compare
ABZR87_RS06645 -3.0 -2.9 TlpA disulfide reductase family protein compare
ABZR87_RS16180 -2.9 -7.5 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS12785 -2.8 -2.7 endopeptidase La compare
ABZR87_RS16250 -2.8 -5.2 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS04785 -2.8 -9.0 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS04945 -2.8 -3.7 DUF4390 domain-containing protein compare
ABZR87_RS10610 -2.8 -2.5 inositol monophosphatase family protein compare
ABZR87_RS01035 -2.7 -6.3 histidine utilization repressor compare
ABZR87_RS10120 -2.7 -3.5 YceD family protein compare
ABZR87_RS17650 -2.7 -11.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07635 -2.6 -4.6 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08695 -2.6 -10.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS06745 -2.5 -6.4 S41 family peptidase compare
ABZR87_RS21795 -2.5 -9.1 NUDIX domain-containing protein compare
ABZR87_RS02385 -2.5 -4.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02235 -2.5 -6.8 response regulator compare
ABZR87_RS12575 -2.5 -3.3 acetyl-CoA C-acyltransferase compare
ABZR87_RS12790 -2.5 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS04975 -2.5 -2.6 peptide deformylase compare
ABZR87_RS10930 -2.5 -3.4 outer membrane protein assembly factor BamB compare
ABZR87_RS12795 -2.5 -6.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS02680 -2.4 -10.8 c-type cytochrome compare
ABZR87_RS01675 -2.4 -3.5 carbohydrate kinase family protein compare
ABZR87_RS00345 -2.3 -12.0 L-aspartate oxidase compare
ABZR87_RS02225 -2.3 -12.0 ATP-binding protein compare
ABZR87_RS14655 -2.3 -9.0 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS10820 -2.2 -6.9 LysR substrate-binding domain-containing protein compare
ABZR87_RS14890 -2.2 -1.6 preprotein translocase subunit SecG compare
ABZR87_RS15405 -2.2 -4.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS09515 -2.1 -1.4 cysteine synthase CysM compare
ABZR87_RS14380 -2.1 -6.9 glutamate racemase compare
ABZR87_RS02630 -2.1 -6.1 iron donor protein CyaY compare
ABZR87_RS11815 -2.1 -8.3 [protein-PII] uridylyltransferase compare
ABZR87_RS16960 -2.1 -5.6 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS17315 -2.1 -4.4 MarR family transcriptional regulator compare
ABZR87_RS02575 -2.0 -6.9 transposase compare
ABZR87_RS07665 -2.0 -9.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS13300 -1.9 -8.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS06400 -1.9 -7.9 response regulator transcription factor compare
ABZR87_RS15685 -1.9 -4.7 TIGR00730 family Rossman fold protein compare
ABZR87_RS11390 -1.9 -8.6 PhoH family protein compare
ABZR87_RS07475 -1.8 -11.8 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABZR87_RS13445 -1.8 -3.5 phasin family protein compare
ABZR87_RS07625 -1.8 -3.5 Holliday junction branch migration protein RuvA compare
ABZR87_RS17495 -1.8 -11.5 acyl-CoA synthetase compare
ABZR87_RS06820 -1.8 -7.6 cytochrome c oxidase subunit 3 compare
ABZR87_RS10780 -1.8 -4.7 PD-(D/E)XK nuclease family protein compare
ABZR87_RS06800 -1.8 -13.6 cytochrome c oxidase subunit I compare
ABZR87_RS08670 -1.8 -8.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS06810 -1.8 -6.0 cytochrome c oxidase assembly protein compare
ABZR87_RS06385 -1.7 -8.3 CHASE3 domain-containing protein compare
ABZR87_RS15440 -1.7 -4.3 ribonuclease G compare
ABZR87_RS09200 -1.7 -12.7 long-chain fatty acid--CoA ligase compare
ABZR87_RS00215 -1.7 -3.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS15805 -1.7 -6.0 IclR family transcriptional regulator compare
ABZR87_RS18910 -1.7 -1.8 DUF2239 family protein compare
ABZR87_RS09625 -1.6 -8.1 CobD/CbiB family protein compare
ABZR87_RS09460 -1.6 -4.1 prephenate dehydrogenase compare
ABZR87_RS01605 -1.6 -7.7 shikimate dehydrogenase compare
ABZR87_RS10785 -1.6 -6.7 exodeoxyribonuclease V subunit beta compare
ABZR87_RS13175 -1.6 -1.9 tRNA-Leu compare
ABZR87_RS09930 -1.6 -10.6 polyhydroxyalkanoate depolymerase compare
ABZR87_RS16735 -1.6 -11.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS06795 -1.6 -8.9 cytochrome c oxidase subunit II compare
ABZR87_RS15795 -1.6 -3.5 CoA transferase subunit B compare
ABZR87_RS13010 -1.5 -1.8 GPW/gp25 family protein compare
ABZR87_RS06265 -1.5 -6.1 biotin synthase BioB compare
ABZR87_RS08025 -1.5 -5.6 DUF2946 family protein compare
ABZR87_RS11015 -1.5 -6.3 amino-acid N-acetyltransferase compare
ABZR87_RS08700 -1.5 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS14665 -1.5 -1.9 histidine phosphatase family protein compare
ABZR87_RS09080 -1.4 -4.6 phage holin family protein compare
ABZR87_RS04995 -1.4 -2.8 DNA topoisomerase III compare
ABZR87_RS11245 -1.4 -4.4 translational GTPase TypA compare
ABZR87_RS14495 -1.4 -2.6 site-specific DNA-methyltransferase compare
ABZR87_RS21285 -1.4 -2.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16730 -1.4 -4.9 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS20300 -1.4 -4.1 hypothetical protein compare
ABZR87_RS10620 -1.3 -2.2 serine O-acetyltransferase compare
ABZR87_RS02400 -1.3 -8.1 Do family serine endopeptidase compare
ABZR87_RS04940 -1.3 -5.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS09440 -1.3 -4.8 DUF2059 domain-containing protein compare
ABZR87_RS14575 -1.3 -4.3 GntR family transcriptional regulator compare
ABZR87_RS11125 -1.3 -4.6 cell division protein ZapE compare
ABZR87_RS00340 -1.3 -2.5 50S ribosomal protein L33 compare
ABZR87_RS07620 -1.3 -3.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS08680 -1.3 -4.8 glycosyltransferase compare
ABZR87_RS23095 -1.3 -1.5 MarR family transcriptional regulator compare
ABZR87_RS06840 -1.2 -4.8 COX15/CtaA family protein compare
ABZR87_RS01980 -1.2 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS04120 -1.2 -4.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR87_RS04245 -1.2 -9.2 OmpW family protein compare
ABZR87_RS15000 -1.2 -7.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06705 -1.2 -7.5 glutamate--cysteine ligase compare
ABZR87_RS03565 -1.2 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS17865 -1.2 -1.7 cation:proton antiporter compare
ABZR87_RS02180 -1.1 -7.8 M61 family metallopeptidase compare
ABZR87_RS05205 -1.1 -4.4 methionine biosynthesis protein MetW compare
ABZR87_RS02035 -1.1 -4.7 substrate-binding domain-containing protein compare
ABZR87_RS11265 -1.1 -1.9 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS07705 -1.1 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS07050 -1.1 -0.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08795 -1.1 -2.5 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS11460 -1.1 -2.8 gephyrin-like molybdotransferase Glp compare
ABZR87_RS10980 -1.1 -1.2 tRNA-Leu compare
ABZR87_RS13315 -1.1 -5.3 RluA family pseudouridine synthase compare
ABZR87_RS05060 -1.1 -3.8 DUF484 family protein compare
ABZR87_RS06710 -1.1 -8.0 glutathione synthase compare
ABZR87_RS12965 -1.1 -1.9 tail protein X compare
ABZR87_RS01640 -1.1 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS07760 -1.1 -2.0 HlyC/CorC family transporter compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source Sebacic acid across organisms