Experiment set9IT077 for Ralstonia sp. UNC404CL21Col

Compare to:

Suberic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14535 -6.6 -4.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14950 -6.6 -4.5 acetolactate synthase small subunit compare
ABZR87_RS02160 -6.4 -4.4 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00195 -6.2 -6.1 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS15790 -5.9 -4.1 3-oxoadipyl-CoA thiolase compare
ABZR87_RS09450 -5.8 -8.0 prephenate dehydratase compare
ABZR87_RS14530 -5.8 -6.9 3-isopropylmalate dehydrogenase compare
ABZR87_RS07360 -5.8 -14.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14540 -5.7 -6.8 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02570 -5.7 -23.2 glutamate synthase-related protein compare
ABZR87_RS20875 -5.6 -8.6 LysR family transcriptional regulator compare
ABZR87_RS14500 -5.5 -15.5 tryptophan synthase subunit beta compare
ABZR87_RS16170 -5.5 -3.8 argininosuccinate lyase compare
ABZR87_RS01810 -5.5 -3.8 glutamate 5-kinase compare
ABZR87_RS09465 -5.4 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00200 -5.3 -6.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS14490 -5.3 -10.2 tryptophan synthase subunit alpha compare
ABZR87_RS13790 -5.2 -9.9 chorismate synthase compare
ABZR87_RS14790 -5.2 -9.9 acyl-CoA dehydrogenase compare
ABZR87_RS02145 -5.1 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS11440 -5.1 -8.5 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09445 -5.1 -13.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS20870 -5.0 -11.2 LysR family transcriptional regulator compare
ABZR87_RS16660 -4.9 -7.4 helix-turn-helix domain-containing protein compare
ABZR87_RS05200 -4.9 -20.2 homoserine O-acetyltransferase compare
ABZR87_RS14795 -4.8 -9.6 acyl-CoA dehydrogenase family protein compare
ABZR87_RS02565 -4.8 -7.3 glutamate synthase subunit beta compare
ABZR87_RS02140 -4.7 -20.4 anthranilate synthase component I compare
ABZR87_RS02595 -4.7 -13.9 shikimate kinase compare
ABZR87_RS00185 -4.7 -3.2 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00210 -4.7 -10.4 nitrite/sulfite reductase compare
ABZR87_RS00190 -4.7 -12.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS22970 -4.7 -12.0 cystathionine gamma-synthase family protein compare
ABZR87_RS02155 -4.6 -6.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS02640 -4.6 -13.8 diaminopimelate decarboxylase compare
ABZR87_RS05170 -4.5 -3.1 acetylglutamate kinase compare
ABZR87_RS07380 -4.5 -14.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02590 -4.5 -12.2 3-dehydroquinate synthase compare
ABZR87_RS00285 -4.5 -3.1 acetylornithine transaminase compare
ABZR87_RS14505 -4.4 -5.7 phosphoribosylanthranilate isomerase compare
ABZR87_RS00835 -4.4 -7.3 argininosuccinate synthase compare
ABZR87_RS04865 -4.3 -3.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS09935 -4.3 -4.2 amino acid aminotransferase compare
ABZR87_RS05100 -4.2 -7.5 RNA polymerase-binding protein DksA compare
ABZR87_RS09200 -4.2 -19.0 long-chain fatty acid--CoA ligase compare
ABZR87_RS12585 -4.1 -10.7 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS06770 -4.1 -8.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS20865 -4.1 -6.1 acyl-CoA dehydrogenase family protein compare
ABZR87_RS20880 -4.0 -12.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS08630 -4.0 -11.2 dihydroorotase compare
ABZR87_RS01110 -4.0 -11.3 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14955 -3.9 -8.9 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS05305 -3.7 -13.7 TetR family transcriptional regulator compare
ABZR87_RS05590 -3.6 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS13250 -3.6 -3.7 phosphoserine phosphatase SerB compare
ABZR87_RS13415 -3.6 -9.1 IclR family transcriptional regulator compare
ABZR87_RS08625 -3.6 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00435 -3.4 -11.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14415 -3.3 -1.5 hemin uptake protein HemP compare
ABZR87_RS00220 -3.3 -9.9 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00355 -3.1 -10.6 quinolinate synthase NadA compare
ABZR87_RS00205 -3.1 -3.1 DUF934 domain-containing protein compare
ABZR87_RS02480 -3.1 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS07050 -2.9 -1.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS13475 -2.9 -8.9 PAS domain S-box protein compare
ABZR87_RS12785 -2.8 -2.7 endopeptidase La compare
ABZR87_RS10565 -2.8 -5.8 cupin domain-containing protein compare
ABZR87_RS15440 -2.7 -4.3 ribonuclease G compare
ABZR87_RS01645 -2.7 -5.3 type II 3-dehydroquinate dehydratase compare
ABZR87_RS08695 -2.6 -10.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS12800 -2.5 -6.9 trigger factor compare
ABZR87_RS10240 -2.5 -3.6 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS12610 -2.5 -9.3 branched-chain amino acid ABC transporter permease compare
ABZR87_RS00350 -2.5 -5.7 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS02235 -2.5 -7.2 response regulator compare
ABZR87_RS12790 -2.3 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS16250 -2.3 -5.6 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS01615 -2.2 -2.1 RNB domain-containing ribonuclease compare
ABZR87_RS16180 -2.2 -7.0 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS04940 -2.2 -7.6 PAS domain-containing sensor histidine kinase compare
ABZR87_RS16960 -2.2 -5.9 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS05130 -2.2 -1.5 CsbD family protein compare
ABZR87_RS09515 -2.1 -1.4 cysteine synthase CysM compare
ABZR87_RS11625 -2.1 -9.5 malate synthase A compare
ABZR87_RS12795 -2.1 -6.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS05350 -2.0 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS12615 -2.0 -4.0 branched-chain amino acid ABC transporter permease compare
ABZR87_RS07635 -2.0 -4.2 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS05495 -2.0 -1.7 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS14890 -2.0 -1.5 preprotein translocase subunit SecG compare
ABZR87_RS16125 -1.9 -5.7 heme biosynthesis protein HemY compare
ABZR87_RS14800 -1.9 -2.5 DUF1178 family protein compare
ABZR87_RS05025 -1.9 -3.3 rod shape-determining protein MreC compare
ABZR87_RS11125 -1.9 -7.6 cell division protein ZapE compare
ABZR87_RS00215 -1.9 -3.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS06745 -1.9 -6.6 S41 family peptidase compare
ABZR87_RS04785 -1.8 -6.7 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS01675 -1.7 -2.7 carbohydrate kinase family protein compare
ABZR87_RS00875 -1.7 -4.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS13285 -1.7 -9.3 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS14655 -1.7 -7.2 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS12600 -1.7 -4.7 ABC transporter ATP-binding protein compare
ABZR87_RS06395 -1.7 -4.5 response regulator compare
ABZR87_RS02225 -1.7 -9.7 ATP-binding protein compare
ABZR87_RS04125 -1.7 -5.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS16080 -1.6 -1.6 P-II family nitrogen regulator compare
ABZR87_RS07700 -1.6 -2.6 peptidylprolyl isomerase compare
ABZR87_RS15810 -1.6 -4.4 hypothetical protein compare
ABZR87_RS08680 -1.6 -7.0 glycosyltransferase compare
ABZR87_RS08670 -1.6 -7.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS07665 -1.6 -7.7 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS06350 -1.6 -3.8 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS02575 -1.5 -5.2 transposase compare
ABZR87_RS03705 -1.5 -1.3 DUF2892 domain-containing protein compare
ABZR87_RS10085 -1.5 -1.5 Rne/Rng family ribonuclease compare
ABZR87_RS20665 -1.5 -4.5 IclR family transcriptional regulator compare
ABZR87_RS12620 -1.5 -9.8 branched-chain amino acid ABC transporter substrate-binding protein compare
ABZR87_RS08700 -1.5 -5.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS12605 -1.5 -3.1 ABC transporter ATP-binding protein compare
ABZR87_RS14510 -1.5 -5.3 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS08655 -1.5 -4.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS17495 -1.5 -9.4 acyl-CoA synthetase compare
ABZR87_RS07625 -1.5 -3.3 Holliday junction branch migration protein RuvA compare
ABZR87_RS04975 -1.5 -1.8 peptide deformylase compare
ABZR87_RS15795 -1.5 -3.8 CoA transferase subunit B compare
ABZR87_RS09460 -1.5 -4.5 prephenate dehydrogenase compare
ABZR87_RS20140 -1.5 -2.8 PAAR domain-containing protein compare
ABZR87_RS06495 -1.4 -3.3 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS21795 -1.4 -5.1 NUDIX domain-containing protein compare
ABZR87_RS17310 -1.4 -4.6 PadR family transcriptional regulator compare
ABZR87_RS14115 -1.4 -1.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13010 -1.4 -1.6 GPW/gp25 family protein compare
ABZR87_RS11015 -1.4 -6.1 amino-acid N-acetyltransferase compare
ABZR87_RS00325 -1.4 -2.6 peptidylprolyl isomerase compare
ABZR87_RS08665 -1.4 -4.9 GNAT family N-acetyltransferase compare
ABZR87_RS16185 -1.4 -1.9 dCTP deaminase compare
ABZR87_RS08970 -1.4 -6.3 protein TolQ compare
ABZR87_RS14785 -1.4 -4.3 MaoC family dehydratase compare
ABZR87_RS13300 -1.3 -6.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS19675 -1.3 -1.1 cold-shock protein compare
ABZR87_RS01780 -1.3 -1.7 MarC family protein compare
ABZR87_RS12965 -1.3 -2.7 tail protein X compare
ABZR87_RS06715 -1.2 -2.4 PTS sugar transporter subunit IIA compare
ABZR87_RS11675 -1.2 -2.1 disulfide bond formation protein B compare
ABZR87_RS14330 -1.2 -1.0 hypothetical protein compare
ABZR87_RS10785 -1.2 -4.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS20690 -1.2 -1.9 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS00345 -1.2 -8.0 L-aspartate oxidase compare
ABZR87_RS03195 -1.2 -8.0 cation diffusion facilitator family transporter compare
ABZR87_RS01035 -1.2 -3.8 histidine utilization repressor compare
ABZR87_RS08640 -1.2 -3.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS10175 -1.2 -4.0 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS10170 -1.2 -4.2 RseA family anti-sigma factor compare
ABZR87_RS07730 -1.2 -2.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS07675 -1.2 -4.9 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS02655 -1.2 -7.0 anti-sigma factor compare
ABZR87_RS06030 -1.2 -1.2 AraC family transcriptional regulator compare
ABZR87_RS00830 -1.1 -2.3 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS08985 -1.1 -7.1 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS15800 -1.1 -3.5 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS21110 -1.1 -2.5 GntR family transcriptional regulator compare
ABZR87_RS11815 -1.1 -5.8 [protein-PII] uridylyltransferase compare
ABZR87_RS08990 -1.1 -4.6 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS15705 -1.1 -3.2 UvrD-helicase domain-containing protein compare
ABZR87_RS08795 -1.1 -2.7 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS23295 -1.1 -1.3 hypothetical protein compare
ABZR87_RS00360 -1.1 -1.6 acyl-CoA desaturase compare
ABZR87_RS14965 -1.1 -2.5 DUF3619 family protein compare
ABZR87_RS15685 -1.1 -3.5 TIGR00730 family Rossman fold protein compare
ABZR87_RS11265 -1.1 -1.9 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS10620 -1.1 -1.6 serine O-acetyltransferase compare
ABZR87_RS23175 -1.0 -3.3 ABC transporter ATP-binding protein compare
ABZR87_RS14235 -1.0 -5.5 formyltetrahydrofolate deformylase compare
ABZR87_RS07705 -1.0 -2.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS05015 -1.0 -4.2 penicillin-binding protein 2 compare
ABZR87_RS18165 -1.0 -1.7 hypothetical protein compare
ABZR87_RS09625 -1.0 -5.7 CobD/CbiB family protein compare
ABZR87_RS21675 -1.0 -7.5 branched-chain amino acid ABC transporter substrate-binding protein compare
ABZR87_RS04945 -1.0 -1.5 DUF4390 domain-containing protein compare
ABZR87_RS16330 -1.0 -3.4 branched-chain amino acid ABC transporter permease compare
ABZR87_RS03780 -1.0 -0.9 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS04995 -1.0 -1.4 DNA topoisomerase III compare
ABZR87_RS10980 -1.0 -1.1 tRNA-Leu compare
ABZR87_RS22515 -1.0 -4.3 nitronate monooxygenase family protein compare
ABZR87_RS12780 -1.0 -1.2 HU family DNA-binding protein compare
ABZR87_RS23180 -1.0 -1.6 ABC transporter ATP-binding protein compare
ABZR87_RS04215 -0.9 -2.7 ABC transporter ATP-binding protein compare
ABZR87_RS10930 -0.9 -1.6 outer membrane protein assembly factor BamB compare
ABZR87_RS09710 -0.9 -2.3 tRNA-Arg compare
ABZR87_RS01605 -0.9 -4.4 shikimate dehydrogenase compare
ABZR87_RS06845 -0.9 -4.8 heme o synthase compare
ABZR87_RS09035 -0.9 -4.6 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS18255 -0.9 -0.7 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS15480 -0.9 -5.8 glycosyltransferase family 25 protein compare
ABZR87_RS02630 -0.9 -3.4 iron donor protein CyaY compare
ABZR87_RS20650 -0.9 -1.6 aspartate dehydrogenase compare
ABZR87_RS12370 -0.9 -2.3 hypothetical protein compare
ABZR87_RS16760 -0.9 -3.2 GGDEF domain-containing protein compare
ABZR87_RS10820 -0.9 -4.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS05990 -0.9 -2.6 AraC family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Suberic acid in Ralstonia sp. UNC404CL21Col

For carbon source Suberic acid across organisms