Experiment set9IT076 for Ralstonia sp. UNC404CL21Col

Compare to:

Pimelic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02155 -6.4 -6.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS13250 -6.2 -4.3 phosphoserine phosphatase SerB compare
ABZR87_RS14535 -6.1 -5.9 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02160 -5.9 -5.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS07360 -5.8 -14.9 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14950 -5.7 -5.6 acetolactate synthase small subunit compare
ABZR87_RS14540 -5.6 -6.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14505 -5.5 -6.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS14500 -5.4 -15.6 tryptophan synthase subunit beta compare
ABZR87_RS02595 -5.4 -11.6 shikimate kinase compare
ABZR87_RS16170 -5.4 -3.7 argininosuccinate lyase compare
ABZR87_RS02570 -5.3 -25.4 glutamate synthase-related protein compare
ABZR87_RS11675 -5.3 -3.6 disulfide bond formation protein B compare
ABZR87_RS16080 -5.2 -3.8 P-II family nitrogen regulator compare
ABZR87_RS02145 -5.2 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS22970 -5.1 -13.1 cystathionine gamma-synthase family protein compare
ABZR87_RS13790 -5.1 -9.1 chorismate synthase compare
ABZR87_RS11625 -5.0 -12.8 malate synthase A compare
ABZR87_RS05200 -4.9 -19.6 homoserine O-acetyltransferase compare
ABZR87_RS14490 -4.9 -9.9 tryptophan synthase subunit alpha compare
ABZR87_RS02565 -4.9 -7.5 glutamate synthase subunit beta compare
ABZR87_RS09445 -4.8 -14.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02640 -4.8 -16.2 diaminopimelate decarboxylase compare
ABZR87_RS09100 -4.7 -15.8 acyl-CoA dehydrogenase compare
ABZR87_RS07380 -4.7 -11.8 FAD/FMN-binding oxidoreductase compare
ABZR87_RS12605 -4.7 -5.2 ABC transporter ATP-binding protein compare
ABZR87_RS09465 -4.6 -8.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS06315 -4.6 -19.6 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS05100 -4.6 -7.0 RNA polymerase-binding protein DksA compare
ABZR87_RS09935 -4.6 -3.2 amino acid aminotransferase compare
ABZR87_RS00835 -4.6 -5.4 argininosuccinate synthase compare
ABZR87_RS00190 -4.6 -13.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00200 -4.5 -6.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS20875 -4.5 -8.3 LysR family transcriptional regulator compare
ABZR87_RS00210 -4.5 -10.8 nitrite/sulfite reductase compare
ABZR87_RS14530 -4.5 -12.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS11440 -4.5 -9.3 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS04215 -4.5 -6.5 ABC transporter ATP-binding protein compare
ABZR87_RS00285 -4.4 -3.0 acetylornithine transaminase compare
ABZR87_RS02590 -4.4 -13.0 3-dehydroquinate synthase compare
ABZR87_RS02140 -4.4 -17.0 anthranilate synthase component I compare
ABZR87_RS16185 -4.4 -3.0 dCTP deaminase compare
ABZR87_RS09450 -4.3 -9.1 prephenate dehydratase compare
ABZR87_RS05170 -4.3 -4.2 acetylglutamate kinase compare
ABZR87_RS14955 -4.3 -5.1 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS13415 -4.3 -5.8 IclR family transcriptional regulator compare
ABZR87_RS08630 -4.2 -11.2 dihydroorotase compare
ABZR87_RS20880 -4.2 -11.4 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS12610 -4.1 -11.4 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS12600 -4.1 -6.4 ABC transporter ATP-binding protein conserved
ABZR87_RS16960 -4.0 -2.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS13475 -3.9 -5.9 PAS domain S-box protein compare
ABZR87_RS17560 -3.9 -14.4 ABC transporter substrate-binding protein compare
ABZR87_RS04200 -3.8 -8.9 branched-chain amino acid ABC transporter permease compare
ABZR87_RS04210 -3.7 -8.4 ABC transporter ATP-binding protein compare
ABZR87_RS05590 -3.7 -2.6 orotate phosphoribosyltransferase compare
ABZR87_RS00185 -3.7 -5.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS01110 -3.7 -10.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS01810 -3.6 -3.6 glutamate 5-kinase compare
ABZR87_RS07665 -3.6 -11.9 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00435 -3.6 -10.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS05305 -3.6 -13.3 TetR family transcriptional regulator compare
ABZR87_RS08625 -3.6 -2.4 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS14115 -3.5 -5.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS12620 -3.5 -18.0 branched-chain amino acid ABC transporter substrate-binding protein conserved
ABZR87_RS21795 -3.4 -6.0 NUDIX domain-containing protein compare
ABZR87_RS04865 -3.4 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS04195 -3.4 -14.1 branched-chain amino acid ABC transporter permease compare
ABZR87_RS16660 -3.3 -4.5 helix-turn-helix domain-containing protein compare
ABZR87_RS06770 -3.3 -7.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS07675 -3.3 -10.7 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS02655 -3.2 -11.1 anti-sigma factor compare
ABZR87_RS16125 -3.2 -7.1 heme biosynthesis protein HemY compare
ABZR87_RS00205 -3.2 -3.2 DUF934 domain-containing protein compare
ABZR87_RS07035 -3.1 -8.7 RNase adapter RapZ compare
ABZR87_RS21365 -2.9 -2.1 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS12625 -2.8 -9.7 3-(methylthio)propionyl-CoA ligase conserved
ABZR87_RS00220 -2.8 -9.4 CysB family HTH-type transcriptional regulator compare
ABZR87_RS08970 -2.8 -9.4 protein TolQ compare
ABZR87_RS12790 -2.8 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS01645 -2.8 -7.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS20870 -2.7 -7.2 LysR family transcriptional regulator compare
ABZR87_RS10565 -2.7 -5.8 cupin domain-containing protein compare
ABZR87_RS07700 -2.7 -2.5 peptidylprolyl isomerase compare
ABZR87_RS12615 -2.7 -3.7 branched-chain amino acid ABC transporter permease compare
ABZR87_RS12800 -2.6 -7.0 trigger factor compare
ABZR87_RS02480 -2.6 -4.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS12785 -2.6 -2.6 endopeptidase La compare
ABZR87_RS06395 -2.6 -4.2 response regulator compare
ABZR87_RS08990 -2.5 -7.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS17525 -2.5 -12.5 helix-turn-helix domain-containing protein compare
ABZR87_RS00195 -2.4 -5.2 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS08985 -2.4 -11.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS03420 -2.4 -1.2 type II secretion system minor pseudopilin GspI compare
ABZR87_RS15440 -2.4 -4.9 ribonuclease G compare
ABZR87_RS07635 -2.3 -4.3 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS12795 -2.3 -6.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS13285 -2.3 -7.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS16165 -2.3 -1.1 anti-sigma factor compare
ABZR87_RS08695 -2.3 -10.3 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS09625 -2.2 -8.8 CobD/CbiB family protein compare
ABZR87_RS16250 -2.2 -5.2 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS06350 -2.2 -3.2 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS23095 -2.1 -1.9 MarR family transcriptional regulator compare
ABZR87_RS04125 -2.1 -8.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08980 -2.1 -3.9 cell envelope integrity protein TolA compare
ABZR87_RS16180 -2.1 -6.4 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS00875 -2.0 -5.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS17495 -2.0 -11.3 acyl-CoA synthetase compare
ABZR87_RS10240 -1.9 -2.5 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS00355 -1.9 -9.6 quinolinate synthase NadA compare
ABZR87_RS08640 -1.8 -5.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS05025 -1.8 -3.0 rod shape-determining protein MreC compare
ABZR87_RS04940 -1.8 -7.2 PAS domain-containing sensor histidine kinase compare
ABZR87_RS12585 -1.8 -5.2 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS06745 -1.8 -6.2 S41 family peptidase compare
ABZR87_RS09085 -1.7 -5.4 DUF883 family protein compare
ABZR87_RS06645 -1.7 -2.6 TlpA disulfide reductase family protein compare
ABZR87_RS11925 -1.7 -8.8 phosphoenolpyruvate synthase compare
ABZR87_RS01615 -1.7 -1.5 RNB domain-containing ribonuclease compare
ABZR87_RS21815 -1.7 -1.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS17310 -1.7 -6.2 PadR family transcriptional regulator compare
ABZR87_RS04785 -1.7 -8.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS10780 -1.7 -5.2 PD-(D/E)XK nuclease family protein compare
ABZR87_RS06845 -1.6 -8.2 heme o synthase compare
ABZR87_RS00350 -1.6 -5.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS22910 -1.6 -2.4 6-phosphogluconolactonase compare
ABZR87_RS04945 -1.6 -2.1 DUF4390 domain-containing protein compare
ABZR87_RS00215 -1.6 -4.0 sulfite exporter TauE/SafE family protein compare
ABZR87_RS17145 -1.6 -9.6 AMP nucleosidase compare
ABZR87_RS04975 -1.5 -2.7 peptide deformylase compare
ABZR87_RS15705 -1.5 -3.7 UvrD-helicase domain-containing protein compare
ABZR87_RS08700 -1.5 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS19435 -1.5 -2.1 trehalose-phosphatase compare
ABZR87_RS02385 -1.5 -4.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS07705 -1.5 -4.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS09200 -1.5 -11.0 long-chain fatty acid--CoA ligase compare
ABZR87_RS19470 -1.5 -8.8 UDP-glucose 4-epimerase GalE compare
ABZR87_RS17440 -1.5 -1.3 (2Fe-2S)-binding protein compare
ABZR87_RS09460 -1.4 -2.8 prephenate dehydrogenase compare
ABZR87_RS01780 -1.4 -1.3 MarC family protein compare
ABZR87_RS15810 -1.4 -3.8 hypothetical protein compare
ABZR87_RS05350 -1.4 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS02380 -1.4 -8.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS07645 -1.4 -4.5 Fis family transcriptional regulator compare
ABZR87_RS10610 -1.4 -2.1 inositol monophosphatase family protein compare
ABZR87_RS14965 -1.4 -2.8 DUF3619 family protein compare
ABZR87_RS20495 -1.4 -1.6 hypothetical protein compare
ABZR87_RS01035 -1.3 -4.7 histidine utilization repressor compare
ABZR87_RS14415 -1.3 -1.4 hemin uptake protein HemP compare
ABZR87_RS02020 -1.3 -7.9 long-chain fatty acid--CoA ligase compare
ABZR87_RS11940 -1.3 -3.3 SsrA-binding protein SmpB compare
ABZR87_RS04205 -1.3 -5.3 ABC transporter substrate-binding protein compare
ABZR87_RS10980 -1.3 -1.2 tRNA-Leu compare
ABZR87_RS01675 -1.3 -1.7 carbohydrate kinase family protein compare
ABZR87_RS05010 -1.3 -3.1 rod shape-determining protein RodA compare
ABZR87_RS07620 -1.2 -3.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS01980 -1.2 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS02445 -1.2 -3.6 Sec-independent protein translocase protein TatB compare
ABZR87_RS05060 -1.2 -4.3 DUF484 family protein compare
ABZR87_RS10785 -1.2 -4.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS10930 -1.2 -1.6 outer membrane protein assembly factor BamB compare
ABZR87_RS09515 -1.2 -1.2 cysteine synthase CysM compare
ABZR87_RS19430 -1.2 -8.7 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
ABZR87_RS07510 -1.2 -4.1 LysR family transcriptional regulator compare
ABZR87_RS06495 -1.2 -2.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS10170 -1.2 -2.7 RseA family anti-sigma factor compare
ABZR87_RS02680 -1.2 -6.9 c-type cytochrome compare
ABZR87_RS02375 -1.1 -6.2 cytochrome c1 compare
ABZR87_RS03015 -1.1 -5.9 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR87_RS10085 -1.1 -1.1 Rne/Rng family ribonuclease compare
ABZR87_RS23035 -1.1 -2.0 PIG-L family deacetylase compare
ABZR87_RS10570 -1.1 -6.8 peptidylprolyl isomerase compare
ABZR87_RS15685 -1.1 -4.3 TIGR00730 family Rossman fold protein compare
ABZR87_RS03565 -1.1 -4.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16270 -1.1 -1.6 cold-shock protein compare
ABZR87_RS20450 -1.1 -1.2 HAD family phosphatase compare
ABZR87_RS01605 -1.1 -5.9 shikimate dehydrogenase compare
ABZR87_RS07050 -1.1 -1.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS03195 -1.1 -7.6 cation diffusion facilitator family transporter compare
ABZR87_RS21615 -1.1 -3.9 response regulator compare
ABZR87_RS14330 -1.1 -0.9 hypothetical protein compare
ABZR87_RS11585 -1.1 -2.8 gamma-glutamylcyclotransferase compare
ABZR87_RS02440 -1.1 -5.0 twin-arginine translocase subunit TatC compare
ABZR87_RS02035 -1.0 -3.9 substrate-binding domain-containing protein compare
ABZR87_RS23515 -1.0 -7.2 sigma-54 dependent transcriptional regulator compare
ABZR87_RS07625 -1.0 -2.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS17340 -1.0 -2.2 MarR family transcriptional regulator compare
ABZR87_RS09080 -1.0 -3.1 phage holin family protein compare
ABZR87_RS03865 -1.0 -5.7 GntR family transcriptional regulator compare
ABZR87_RS06355 -1.0 -4.3 SPOR domain-containing protein compare
ABZR87_RS14970 -1.0 -2.1 DUF3106 domain-containing protein compare
ABZR87_RS08505 -1.0 -1.5 CpaE family protein compare
ABZR87_RS11125 -1.0 -3.9 cell division protein ZapE compare
ABZR87_RS22920 -1.0 -2.1 phosphogluconate dehydratase compare
ABZR87_RS06400 -1.0 -4.9 response regulator transcription factor compare
ABZR87_RS17185 -1.0 -4.1 amidohydrolase compare
ABZR87_RS02575 -0.9 -3.4 transposase compare
ABZR87_RS07020 -0.9 -6.2 dynamin-like GTPase family protein compare
ABZR87_RS01745 -0.9 -2.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Pimelic acid in Ralstonia sp. UNC404CL21Col

For carbon source Pimelic acid across organisms