Experiment set9IT071 for Sinorhizobium meliloti 1021

Compare to:

L-Lysine carbon source

200 most important genes:

  gene name fitness t score description  
SMc02123 -8.2 -3.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02504 -7.7 -5.3 transcriptional regulator compare
SMc01494 -7.6 -9.1 phosphoserine phosphatase compare
SMc01726 -7.4 -5.1 acetylglutamate kinase compare
SMc02767 -7.3 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02766 -7.2 -13.9 tryptophan synthase subunit beta compare
SMc01843 -7.2 -7.0 5,10-methylenetetrahydrofolate reductase compare
SMc03981 -7.0 -4.8 phosphoglycerate kinase compare
SMc01028 -6.9 -8.2 phosphopyruvate hydratase compare
SMc02899 -6.9 -9.5 prephenate dehydratase compare
SMc02569 -6.8 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
SMc02503 -6.8 -4.7 hypothetical protein compare
SMc04882 -6.8 -5.8 transcriptional regulator compare
SMc02717 -6.8 -4.7 2-isopropylmalate synthase compare
SMc00236 -6.8 -5.6 Indole-3-glycerol phosphate synthase compare
SMc00131 -6.7 -11.2 transcriptional regulator compare
SMc03823 -6.7 -11.1 isopropylmalate isomerase large subunit compare
SMc02838 -6.7 -6.5 phosphoglyceromutase compare
SMc03797 -6.6 -9.0 homoserine O-succinyltransferase compare
SMc02707 -6.5 -3.7 hypothetical protein compare
SMc00092 -6.5 -8.9 phosphoadenosine phosphosulfate reductase compare
SMc04045 -6.5 -7.7 dihydroxy-acid dehydratase compare
SMc00640 -6.5 -4.5 phosphoserine aminotransferase compare
SMc04002 -6.4 -9.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc04405 -6.4 -7.6 3-isopropylmalate dehydrogenase compare
SMc03112 -6.4 -12.9 B12-dependent methionine synthase compare
SMc00711 -6.3 -4.3 cyclohexadienyl dehydrogenase compare
SMc02765 -6.3 -11.7 tryptophan synthase subunit alpha compare
SMa1635 -6.2 -2.4 hypothetical protein compare
SMc04385 -6.2 -4.3 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00615 -6.2 -16.4 phosphoribosylaminoimidazole synthetase compare
SMc01054 -6.2 -6.0 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00235 -6.1 -8.4 anthranilate phosphoribosyltransferase compare
SMc01431 -6.1 -10.2 acetolactate synthase 3 catalytic subunit compare
SMc02217 -6.0 -4.2 O-succinylhomoserine sulfhydrylase compare
SMc00993 -6.0 -9.9 phosphoribosylamine--glycine ligase compare
SMc00494 -5.9 -2.3 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc03776 -5.9 -4.1 gamma-glutamyl kinase compare
SM_b21181 -5.9 -8.1 glutaryl-CoA dehydrogenase compare
SMc02562 -5.9 -5.7 phosphoenolpyruvate carboxykinase compare
SMc01801 -5.8 -3.9 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02047 -5.8 -6.6 glycine cleavage system aminomethyltransferase T compare
SMc00293 -5.7 -11.9 homoserine dehydrogenase compare
SMc00614 -5.7 -7.8 phosphoribosylglycinamide formyltransferase compare
SMc04384 -5.6 -10.1 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc00488 -5.6 -19.3 phosphoribosylformylglycinamidine synthase II compare
SMc00493 -5.4 -6.4 phosphoribosylformylglycinamidine synthase I compare
SMc02124 -5.4 -13.1 nitrite reductase compare
SMc00917 -5.4 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02725 -5.4 -11.5 anthranilate synthase compare
SMc00495 -5.4 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00918 -5.3 -9.6 ATP phosphoribosyltransferase regulatory subunit compare
SMc00554 -5.3 -5.2 amidophosphoribosyltransferase compare
SMc00090 -5.3 -9.5 sulfate adenylyltransferase compare
SMc02137 -5.2 -3.6 ornithine carbamoyltransferase compare
SMc03777 -5.2 -6.2 gamma-glutamyl phosphate reductase compare
SMc01004 -5.1 -9.7 phosphoribosyl-AMP cyclohydrolase compare
SMc02049 -5.1 -18.3 glycine dehydrogenase compare
SMc03879 -5.1 -6.9 Acetyl-CoA acetyltransferase (EC 2.3.1.9) (from data) conserved
SMc03979 -5.1 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
SMc04088 -5.0 -9.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00412 -4.9 -3.4 orotidine 5'-phosphate decarboxylase compare
SMc02245 -4.7 -6.0 dihydroorotate dehydrogenase 2 compare
SMc02570 -4.5 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02048 -4.5 -8.5 glycine cleavage system protein H compare
SMc04001 -4.5 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc03229 -4.4 -2.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00768 -4.4 -11.2 isocitrate lyase compare
SMc04085 -4.4 -3.0 hypothetical protein compare
SM_b21182 -4.2 -11.8 hypothetical protein compare
SMc00025 -4.2 -9.4 pyruvate phosphate dikinase compare
SMc00296 -4.2 -10.4 POLY3-hydroxybutyrate polymerase compare
SMc02307 -4.1 -6.8 histidinol dehydrogenase compare
SMc02166 -4.0 -9.9 dihydroorotase compare
SMc03974 -4.0 -4.2 hypothetical protein compare
SMc00769 -4.0 -11.3 hypothetical protein compare
SMc02165 -3.9 -6.6 orotate phosphoribosyltransferase compare
SMc00982 -3.9 -6.0 dioxygenase compare
SMc00091 -3.9 -8.3 sulfate adenylyltransferase compare
SMc01053 -3.9 -4.6 siroheme synthase compare
SMc03795 -3.8 -2.0 isopropylmalate isomerase small subunit compare
SMc02138 -3.7 -7.1 acetylornithine transaminase compare
SM_b21176 -3.6 -5.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc01430 -3.6 -6.7 acetolactate synthase 3 regulatory subunit compare
SMc01770 -3.6 -1.6 serine hydroxymethyltransferase compare
SMc00017 -3.5 -1.8 homoserine kinase compare
SMc02755 -3.5 -5.8 S-adenosyl-L-homocysteine hydrolase compare
SMc01360 -3.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
SMc01881 -3.4 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02121 -3.4 -1.7 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SM_b20197 -3.4 -5.4 ribulose-1,5-bisphosphate carboxylase small subunit (EC 4.1.1.39) (from data) compare
SMc00709 -3.3 -3.2 hypothetical protein compare
SMc02172 -3.3 -10.7 transcriptional regulator compare
SMc04346 -3.2 -3.9 ketol-acid reductoisomerase compare
SMc02246 -3.2 -1.2 hypothetical protein compare
SM_b20198 -3.2 -10.9 ribulose bisophosphate carboxylase compare
SMc01206 -3.1 -1.6 queuine tRNA-ribosyltransferase compare
SMc00876 -3.1 -3.7 ATP-binding MRP protein compare
SMc01440 -3.1 -7.6 hydrolase serine protease transmembrane protein compare
SM_b21177 -3.1 -7.4 phosphate uptake ABC transporter ATP-binding protein compare
SMc02640 -3.0 -4.9 UDP-glucuronic acid epimerase compare
SMc04386 -3.0 -5.7 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data) compare
SMc04383 -2.9 -5.6 putative hydrolase, required for lysine catabolism (from data) compare
SMc00641 -2.9 -4.3 D-3-phosphoglycerate dehydrogenase compare
SMc02724 -2.9 -2.6 hypothetical protein compare
SMc00139 -2.9 -12.1 L-lysine ABC transporter, permease component 1 (from data) conserved
SMc00981 -2.8 -5.3 ferredoxin protein compare
SM_b21175 -2.8 -4.0 phosphate uptake ABC transporter permease compare
SMc00295 -2.7 -1.4 hypothetical protein compare
SMc00294 -2.7 -8.8 aminotransferase compare
SMc02058 -2.7 -3.6 YAJC protein compare
SM_b21174 -2.6 -5.2 phosphate uptake ABC transporter permease compare
SMc00138 -2.6 -12.9 L-lysine ABC transporter, permease component 2 (from data) conserved
SMc02572 -2.5 -2.5 imidazole glycerol phosphate synthase subunit HisH compare
SMc00414 -2.4 -11.5 hypothetical protein compare
SMc03069 -2.4 -2.6 6-phosphogluconolactonase compare
SMc00580 -2.4 -2.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02308 -2.4 -2.5 hypothetical protein compare
SMc00140 -2.4 -10.4 L-lysine ABC transporter, substrate-binding component (from data) compare
SMc00427 -2.3 -1.6 peptide chain release factor RF-3 protein compare
SMc02683 -2.3 -2.3 hypothetical protein compare
SMc01361 -2.3 -2.2 dihydroorotase compare
SMc02641 -2.3 -2.2 UDP-glucose 6-dehydrogenase compare
SMc00012 -2.3 -1.9 cytochrome C oxidase assembly protein compare
SMc00073 -2.2 -1.5 hypothetical protein compare
SMc02055 -2.2 -2.5 phytoene synthase compare
SMc01124 -2.2 -6.6 PII uridylyl-transferase compare
SMc02232 -2.2 -2.5 hypothetical protein compare
SMc00565 -2.2 -1.6 50S ribosomal protein L9 compare
SMc00555 -2.1 -1.8 colicin V production transmembrane protein compare
SMc04260 -2.1 -8.6 transcriptional regulator compare
SMc01880 -2.1 -1.4 pantoate--beta-alanine ligase compare
SMc02115 -2.1 -0.7 hypothetical protein compare
SM_b20196 -2.0 -8.7 CbbX protein compare
SMc03978 -2.0 -1.4 transketolase compare
SMc00302 -2.0 -1.8 hypothetical protein compare
SMc03133 -2.0 -10.4 amino-acid transport system permease ABC transporter protein compare
SMc02685 -2.0 -3.6 hypothetical protein compare
SM_b21598 -2.0 -7.3 transcriptional regulator compare
SMc00450 -2.0 -1.3 protoheme IX farnesyltransferase compare
SMc01505 -1.9 -2.0 hypothetical protein compare
SMc01187 -1.9 -2.3 rare lipoprotein A compare
SMc01120 -1.9 -4.2 hypothetical protein compare
SMc03131 -1.9 -9.8 amino acid-binding periplasmic ABC transporter protein compare
SM_b20509 -1.9 -4.1 transcriptional regulator compare
SMc00321 -1.8 -5.6 tRNA pseudouridine synthase B compare
SMc01441 -1.8 -5.5 membrane bound protease compare
SMc01495 -1.8 -4.1 transcriptional regulator compare
SMa2020 -1.8 -5.9 Transcriptional regulator compare
SMc02112 -1.8 -7.2 hypothetical protein compare
SMc02975 -1.8 -6.9 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc02425 -1.8 -2.5 transcriptional regulator compare
SMc00088 -1.7 -1.4 hypothetical protein compare
SMc02753 -1.7 -0.9 PTS system transporter subunit IIA compare
SMa1442 -1.7 -6.1 GntR family transcriptional regulator compare
SMc01091 -1.7 -3.1 hypothetical protein compare
SMc01164 -1.7 -7.8 hypothetical protein compare
SMc02164 -1.7 -2.6 fructokinase compare
SMc01950 -1.7 -10.9 high-affinity branched-chain amino acid ABC transporter permease compare
SM_b20387 -1.7 -1.7 transcriptional regulator compare
SMc03132 -1.6 -7.2 oxidoreductase compare
SMc00353 -1.6 -1.9 transmembrane protein compare
SMc00760 -1.6 -3.4 recombinase A compare
SMc01939 -1.6 -1.3 urease subunit beta compare
SMc01842 -1.5 -1.7 methyltransferase transcription regulator protein compare
SMc02227 -1.5 -4.7 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc00151 -1.5 -4.9 phosphoglycolate phosphatase compare
SMc00726 -1.5 -0.8 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01948 -1.5 -4.3 high-affinity branched-chain amino acid ABC transporter ATP-binding protein compare
SMc02850 -1.5 -1.4 DNA polymerase I compare
SMc00914 -1.5 -2.1 oxidoreductase compare
SMc03993 -1.5 -3.0 hypothetical protein compare
SM_b21133 -1.5 -8.5 sulfate ABC transporter substrate-binding protein compare
SMc02050 -1.4 -2.7 trigger factor compare
SMc02460 -1.4 -7.4 hypothetical protein compare
SMc02581 -1.4 -6.7 malate synthase G compare
SMc02229 -1.4 -7.7 acyl-CoA dehydrogenase compare
SMc01946 -1.4 -7.4 leucine-specific binding protein compare
SMc01951 -1.4 -6.0 high-affinity branched-chain amino acid ABC transporter permease compare
SMc02141 -1.4 -0.9 phosphate transporter PhoU compare
SMc02574 -1.3 -2.9 imidazoleglycerol-phosphate dehydratase compare
SMc02719 -1.3 -1.2 transposase compare
SMc00970 -1.3 -1.3 exodeoxyribonuclease VII small subunit compare
SM_b20258 -1.3 -2.6 transcriptional regulator compare
SM_b20392 -1.3 -4.6 transcriptional regulator NanR compare
SMc02833 -1.3 -0.9 penicillin-insensitive murein endopeptidase compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc04454 -1.3 -4.9 ABC transporter ATP-binding protein compare
SMc02659 -1.3 -2.6 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc01220 -1.3 -3.8 lipopolysaccharide core biosynthesis glycosyl transferase compare
SM_b21374 -1.3 -4.3 tagatose kinase (EC 2.7.1.101) (from data) compare
SM_b21132 -1.2 -2.1 sulfate ABC transporter permease compare
SMc00298 -1.2 -3.3 methionine aminopeptidase compare
SM_b21035 -1.2 -3.8 hypothetical protein compare
SM_b20370 -1.2 -2.8 ATP-binding transport protein compare
SMc02435 -1.2 -1.1 methyltransferase compare
SMc00579 -1.2 -3.2 dimethyladenosine transferase compare
SMa0078 -1.2 -6.1 LacI family transcriptional regulator compare
SMc01207 -1.2 -1.5 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc00034 -1.2 -3.5 oxidoreductase compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source L-Lysine in Sinorhizobium meliloti 1021

For carbon source L-Lysine across organisms