Experiment set9IT071 for Bifidobacterium breve UCC2003
diet=StandardDiet2; sample=FecalPellet; mouse16; day4
Group: mouseMedia: + diet=StandardDiet2; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 8/20/2020
Specific Phenotypes
For 5 genes in this experiment
For mouse diet=StandardDiet2; sample=FecalPellet in Bifidobacterium breve UCC2003
For mouse diet=StandardDiet2; sample=FecalPellet across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Galactose metabolism
- Alanine and aspartate metabolism
- Other glycan degradation
- Glycosaminoglycan degradation
- Glycerophospholipid metabolism
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- Nitrogen metabolism
- Biosynthesis of phenylpropanoids
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| lactose degradation III | 1 | 1 | 1 |
| L-glutamate degradation II | 2 | 2 | 1 |
| glycerophosphodiester degradation | 2 | 1 | 1 |
| phosphatidylcholine resynthesis via glycerophosphocholine | 2 | 1 | 1 |
| xyloglucan degradation II (exoglucanase) | 8 | 3 | 3 |
| L-aspartate degradation III (anaerobic) | 3 | 2 | 1 |
| L-aspartate degradation II (aerobic) | 3 | 2 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 2 | 1 |
| phospholipid remodeling (phosphatidylethanolamine, yeast) | 4 | 2 | 1 |
| glycerol and glycerophosphodiester degradation | 4 | 1 | 1 |
| L-canavanine degradation II | 6 | 1 | 1 |
| anandamide biosynthesis I | 12 | 2 | 1 |