Experiment set9IT070 for Sinorhizobium meliloti 1021

Compare to:

L-Lysine carbon source

200 most important genes:

  gene name fitness t score description  
SMc04882 -8.4 -5.8 transcriptional regulator compare
SMc02838 -8.4 -5.8 phosphoglyceromutase compare
SMc00236 -7.9 -5.4 Indole-3-glycerol phosphate synthase compare
SMc02766 -7.6 -13.8 tryptophan synthase subunit beta compare
SMc01726 -7.4 -5.1 acetylglutamate kinase compare
SMc00235 -7.2 -5.0 anthranilate phosphoribosyltransferase compare
SMc01494 -7.2 -9.8 phosphoserine phosphatase compare
SMc01054 -7.0 -4.8 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00131 -6.9 -13.3 transcriptional regulator compare
SM_b21181 -6.9 -4.8 glutaryl-CoA dehydrogenase compare
SMc02569 -6.8 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
SMc01028 -6.8 -9.3 phosphopyruvate hydratase compare
SMc03823 -6.6 -11.1 isopropylmalate isomerase large subunit compare
SMc04045 -6.6 -6.5 dihydroxy-acid dehydratase compare
SMc02899 -6.5 -8.9 prephenate dehydratase compare
SMc02725 -6.5 -8.9 anthranilate synthase compare
SMc00640 -6.5 -4.5 phosphoserine aminotransferase compare
SMc01431 -6.4 -7.6 acetolactate synthase 3 catalytic subunit compare
SMc00614 -6.4 -6.2 phosphoribosylglycinamide formyltransferase compare
SMc02767 -6.3 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01843 -6.3 -12.1 5,10-methylenetetrahydrofolate reductase compare
SMc00711 -6.3 -4.3 cyclohexadienyl dehydrogenase compare
SMc02504 -6.3 -5.9 transcriptional regulator compare
SMc00918 -6.3 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
SMc02503 -6.2 -7.4 hypothetical protein compare
SMa1635 -6.2 -2.5 hypothetical protein compare
SMc00092 -6.2 -8.5 phosphoadenosine phosphosulfate reductase compare
SMc02717 -6.1 -11.8 2-isopropylmalate synthase compare
SMc02562 -6.1 -4.2 phosphoenolpyruvate carboxykinase compare
SMc01004 -6.1 -10.1 phosphoribosyl-AMP cyclohydrolase compare
SMc00090 -6.1 -9.3 sulfate adenylyltransferase compare
SMc03981 -6.1 -5.9 phosphoglycerate kinase compare
SMc03797 -6.0 -10.0 homoserine O-succinyltransferase compare
SMc00494 -6.0 -2.4 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00917 -5.9 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00993 -5.9 -9.9 phosphoribosylamine--glycine ligase compare
SMc00488 -5.9 -17.3 phosphoribosylformylglycinamidine synthase II compare
SMc01801 -5.8 -4.0 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02765 -5.7 -10.8 tryptophan synthase subunit alpha compare
SMc04405 -5.7 -6.0 3-isopropylmalate dehydrogenase compare
SMc03112 -5.4 -16.2 B12-dependent methionine synthase compare
SMc04002 -5.4 -9.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02047 -5.3 -7.4 glycine cleavage system aminomethyltransferase T compare
SMc00293 -5.3 -10.3 homoserine dehydrogenase compare
SMc00615 -5.3 -11.3 phosphoribosylaminoimidazole synthetase compare
SM_b21182 -5.2 -8.7 hypothetical protein compare
SM_b21174 -5.2 -6.1 phosphate uptake ABC transporter permease compare
SMc02137 -5.2 -3.6 ornithine carbamoyltransferase compare
SMc02707 -5.1 -5.8 hypothetical protein compare
SMc02124 -5.1 -13.5 nitrite reductase compare
SMc03979 -5.1 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00091 -5.1 -10.8 sulfate adenylyltransferase compare
SMc02570 -4.9 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02049 -4.9 -18.1 glycine dehydrogenase compare
SMc02217 -4.9 -7.4 O-succinylhomoserine sulfhydrylase compare
SMc04384 -4.8 -9.9 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc03879 -4.8 -7.3 Acetyl-CoA acetyltransferase (EC 2.3.1.9) (from data) conserved
SMc00495 -4.8 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc04088 -4.7 -10.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc04385 -4.7 -5.2 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc02123 -4.7 -5.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02048 -4.7 -8.7 glycine cleavage system protein H compare
SMc03974 -4.6 -6.7 hypothetical protein compare
SMc00768 -4.6 -10.9 isocitrate lyase compare
SMc00412 -4.5 -4.4 orotidine 5'-phosphate decarboxylase compare
SMc03777 -4.5 -7.5 gamma-glutamyl phosphate reductase compare
SM_b21177 -4.4 -7.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc02755 -4.4 -3.0 S-adenosyl-L-homocysteine hydrolase compare
SMc03229 -4.4 -3.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02232 -4.4 -3.0 hypothetical protein compare
SMc02724 -4.3 -3.0 hypothetical protein compare
SMc00493 -4.3 -5.5 phosphoribosylformylglycinamidine synthase I compare
SMc03069 -4.3 -2.8 6-phosphogluconolactonase compare
SMc02308 -4.1 -4.2 hypothetical protein compare
SMc00554 -4.1 -9.4 amidophosphoribosyltransferase compare
SMc04085 -4.0 -3.9 hypothetical protein compare
SMc02165 -4.0 -6.1 orotate phosphoribosyltransferase compare
SMc00025 -3.9 -9.5 pyruvate phosphate dikinase compare
SMc02138 -3.9 -7.8 acetylornithine transaminase compare
SMc00296 -3.9 -10.5 POLY3-hydroxybutyrate polymerase compare
SMc02166 -3.8 -10.1 dihydroorotase compare
SMc03795 -3.8 -2.1 isopropylmalate isomerase small subunit compare
SMc04346 -3.8 -6.0 ketol-acid reductoisomerase compare
SMc02172 -3.8 -11.6 transcriptional regulator compare
SMc02307 -3.8 -7.6 histidinol dehydrogenase compare
SMc01053 -3.8 -4.4 siroheme synthase compare
SM_b20197 -3.7 -7.1 ribulose-1,5-bisphosphate carboxylase small subunit (EC 4.1.1.39) (from data) compare
SMc00769 -3.7 -11.5 hypothetical protein compare
SMc00982 -3.7 -5.5 dioxygenase compare
SMc00641 -3.6 -5.3 D-3-phosphoglycerate dehydrogenase compare
SMc00709 -3.6 -4.0 hypothetical protein compare
SMc01770 -3.6 -1.7 serine hydroxymethyltransferase compare
SMc02245 -3.6 -6.8 dihydroorotate dehydrogenase 2 compare
SMc00017 -3.5 -1.8 homoserine kinase compare
SMc02572 -3.5 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc03776 -3.5 -3.8 gamma-glutamyl kinase compare
SMc00876 -3.5 -2.4 ATP-binding MRP protein compare
SMc01360 -3.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
SMc02121 -3.4 -1.8 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc01430 -3.4 -4.7 acetolactate synthase 3 regulatory subunit compare
SM_b20198 -3.3 -12.3 ribulose bisophosphate carboxylase compare
SMc04383 -3.3 -6.2 putative hydrolase, required for lysine catabolism (from data) compare
SMc04386 -3.2 -6.1 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data) compare
SMc02753 -3.2 -1.3 PTS system transporter subunit IIA compare
SMc02246 -3.2 -1.2 hypothetical protein compare
SMc01207 -3.1 -2.1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc04001 -3.0 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SM_b21175 -3.0 -4.0 phosphate uptake ABC transporter permease compare
SMc02425 -3.0 -4.0 transcriptional regulator compare
SMc00294 -2.9 -8.4 aminotransferase compare
SMc02055 -2.8 -2.6 phytoene synthase compare
SMc01881 -2.7 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SM_b21176 -2.7 -5.5 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00138 -2.6 -14.1 L-lysine ABC transporter, permease component 2 (from data) conserved
SMc01440 -2.6 -6.7 hydrolase serine protease transmembrane protein compare
SMc00981 -2.5 -5.4 ferredoxin protein compare
SMc02858 -2.5 -1.0 chaperone protein DnaJ compare
SMc00139 -2.5 -7.6 L-lysine ABC transporter, permease component 1 (from data) conserved
SMc01206 -2.4 -1.9 queuine tRNA-ribosyltransferase compare
SM_b20196 -2.4 -10.3 CbbX protein compare
SMc01120 -2.4 -4.5 hypothetical protein compare
SMc02574 -2.4 -5.2 imidazoleglycerol-phosphate dehydratase compare
SMc03878 -2.4 -3.8 acetoacetyl-CoA reductase compare
SMc02683 -2.3 -2.7 hypothetical protein compare
SM_b20509 -2.3 -4.0 transcriptional regulator compare
SMc00427 -2.3 -1.6 peptide chain release factor RF-3 protein compare
SMc00321 -2.3 -6.8 tRNA pseudouridine synthase B compare
SMc02713 -2.2 -2.7 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc00414 -2.2 -8.5 hypothetical protein compare
SMc00712 -2.2 -2.4 hypothetical protein compare
SMc01164 -2.1 -6.4 hypothetical protein compare
SMc01880 -2.1 -1.4 pantoate--beta-alanine ligase compare
SMa2020 -2.1 -5.8 Transcriptional regulator compare
SMc02115 -2.0 -0.8 hypothetical protein compare
SMc02975 -2.0 -6.7 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc00140 -2.0 -10.3 L-lysine ABC transporter, substrate-binding component (from data) compare
SMc01842 -2.0 -2.3 methyltransferase transcription regulator protein compare
SMc03131 -2.0 -9.7 amino acid-binding periplasmic ABC transporter protein compare
SMc02058 -2.0 -3.6 YAJC protein compare
SMc04260 -2.0 -9.6 transcriptional regulator compare
SMc01124 -1.9 -5.7 PII uridylyl-transferase compare
SMc01441 -1.9 -6.0 membrane bound protease compare
SM_b20746 -1.9 -1.6 hypothetical protein compare
SMc03978 -1.9 -1.8 transketolase compare
SMc00334 -1.9 -1.2 cytidylate kinase compare
SMc01183 -1.8 -0.9 LexA repressor compare
SMc03133 -1.8 -10.0 amino-acid transport system permease ABC transporter protein compare
SMc02641 -1.8 -2.3 UDP-glucose 6-dehydrogenase compare
SMc04391 -1.8 -2.4 3-ketoacyl-ACP reductase compare
SMc03100 -1.8 -1.2 hypothetical protein compare
SMc02112 -1.8 -7.0 hypothetical protein compare
SMc00355 -1.7 -2.9 hypothetical protein compare
SMc04454 -1.7 -4.5 ABC transporter ATP-binding protein compare
SMc00565 -1.7 -1.6 50S ribosomal protein L9 compare
SMc00295 -1.7 -1.0 hypothetical protein compare
SMc01850 -1.7 -2.7 hypothetical protein compare
SMc02229 -1.7 -8.3 acyl-CoA dehydrogenase compare
SM_b21132 -1.7 -4.6 sulfate ABC transporter permease compare
SMc02640 -1.7 -3.9 UDP-glucuronic acid epimerase compare
SM_b20392 -1.7 -6.1 transcriptional regulator NanR compare
SM_b20021 -1.6 -1.3 transcriptional regulator compare
SMc00761 -1.6 -9.2 oxidoreductase compare
SMc01800 -1.6 -0.8 cytochrome C oxidase assembly transmembrane protein compare
SMc00151 -1.6 -6.7 phosphoglycolate phosphatase compare
SMc01501 -1.5 -3.0 mannitol 2-dehydrogenase compare
SMc01361 -1.5 -2.4 dihydroorotase compare
SMc00302 -1.5 -1.6 hypothetical protein compare
SMc04224 -1.5 -2.0 hypothetical protein compare
SMc01951 -1.5 -6.9 high-affinity branched-chain amino acid ABC transporter permease compare
SMc00726 -1.5 -0.8 thiol:disulfide interchange redox-active center transmembrane protein compare
SMa1442 -1.5 -5.4 GntR family transcriptional regulator compare
SMc03132 -1.5 -8.2 oxidoreductase compare
SMc01948 -1.5 -3.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein compare
SMa1365 -1.5 -1.6 ATP-binding protein compare
SMc00450 -1.4 -1.3 protoheme IX farnesyltransferase compare
SMc00580 -1.4 -2.2 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc04298 -1.4 -2.8 hypothetical protein compare
SMc01949 -1.4 -3.6 high-affinity branched-chain amino acid ABC transporter ATP-binding protein compare
SMc00514 -1.4 -3.8 monooxygenase compare
SMc01950 -1.4 -8.2 high-affinity branched-chain amino acid ABC transporter permease compare
SMc02581 -1.4 -7.4 malate synthase G compare
SMc02227 -1.4 -4.3 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc00013 -1.4 -1.2 cytochrome C oxidase subunit III transmembrane protein compare
SMc04330 -1.4 -1.7 trimethylamine methyltransferase compare
SMc01220 -1.4 -3.9 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02812 -1.3 -3.1 hypothetical protein compare
SMc02145 -1.3 -0.7 signal peptide protein compare
SMc02850 -1.3 -1.5 DNA polymerase I compare
SMc03993 -1.3 -3.2 hypothetical protein compare
SMc02778 -1.3 -1.5 hydroxyacid aldolase compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc00513 -1.3 -5.9 amino acid-binding periplasmic protein compare
SMa0955 -1.3 -1.6 GntR family transcriptional regulator compare
SM_b20148 -1.3 -3.8 transcriptional regulator compare
SMc00353 -1.2 -2.0 transmembrane protein compare
SMc03850 -1.2 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02228 -1.2 -3.6 acetyl-CoA acetyltransferase compare
SMc02460 -1.2 -5.1 hypothetical protein compare
SM_b21598 -1.2 -4.0 transcriptional regulator compare
SMc01946 -1.2 -5.4 leucine-specific binding protein compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source L-Lysine in Sinorhizobium meliloti 1021

For carbon source L-Lysine across organisms