Experiment set9IT070 for Paraburkholderia graminis OAS925

Compare to:

R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM

Group: stress
Media: R2A + (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone (10 uM)
Culturing: Burkholderia_OAS925_ML2, tube, Aerobic, at 30 (C), shaken=200 rpm
By: Marta Torres on 29-Jul-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 14 genes in this experiment

For stress (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone in Paraburkholderia graminis OAS925

For stress (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone across organisms

SEED Subsystems

Subsystem #Specific
Multidrug Resistance Efflux Pumps 2
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Isoprenoid Biosynthesis 1
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 1
Phosphate metabolism 1
Phosphonate metabolism 1
Phosphorylcholine incorporation in LPS 1
polyprenyl synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
2-aminoethylphosphonate biosynthesis 3 3 3
2-aminoethylphosphonate degradation II 2 2 1
methylphosphonate biosynthesis 4 2 2
cardiolipin biosynthesis II 3 3 1
cardiolipin biosynthesis III 3 2 1
cardiolipin biosynthesis I 3 2 1
2-aminoethylphosphonate degradation I 3 2 1
fosfomycin biosynthesis 7 2 2
methylerythritol phosphate pathway II 9 8 2
methylerythritol phosphate pathway I 9 7 2
isoprene biosynthesis I 10 7 2
phosphatidylglycerol biosynthesis II 6 6 1
phosphatidylglycerol biosynthesis I 6 6 1
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) 12 10 2
rhizocticin A and B biosynthesis 12 2 2
taxadiene biosynthesis (engineered) 13 10 2
dehydrophos biosynthesis 13 2 2
FR-900098 and FR-33289 antibiotics biosynthesis 10 1 1
superpathway of phospholipid biosynthesis III (E. coli) 12 10 1
phosphinothricin tripeptide biosynthesis 25 6 2
phosalacine biosynthesis 25 6 2
superpathway of cardiolipin biosynthesis (bacteria) 13 9 1
superpathway of ergosterol biosynthesis II 26 11 2
type I lipoteichoic acid biosynthesis (S. aureus) 17 5 1
superpathway of phospholipid biosynthesis II (plants) 28 10 1