Experiment set9IT068 for Ralstonia sp. UNC404CL21Col

Compare to:

Valeric acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02160 -6.2 -4.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14540 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS00205 -5.8 -5.6 DUF934 domain-containing protein compare
ABZR87_RS14535 -5.7 -6.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS01110 -5.7 -6.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS08630 -5.6 -6.7 dihydroorotase compare
ABZR87_RS20880 -5.5 -7.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02570 -5.4 -23.2 glutamate synthase-related protein compare
ABZR87_RS14500 -5.4 -14.4 tryptophan synthase subunit beta compare
ABZR87_RS00200 -5.4 -5.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS01810 -5.3 -3.6 glutamate 5-kinase compare
ABZR87_RS22970 -5.3 -13.2 cystathionine gamma-synthase family protein compare
ABZR87_RS14490 -5.3 -8.1 tryptophan synthase subunit alpha compare
ABZR87_RS02595 -5.2 -11.2 shikimate kinase compare
ABZR87_RS16730 -5.1 -7.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS13250 -5.1 -4.8 phosphoserine phosphatase SerB compare
ABZR87_RS02155 -5.0 -8.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS02145 -5.0 -3.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14950 -4.9 -4.1 acetolactate synthase small subunit compare
ABZR87_RS02640 -4.9 -14.3 diaminopimelate decarboxylase compare
ABZR87_RS13790 -4.7 -10.5 chorismate synthase compare
ABZR87_RS16740 -4.7 -9.0 2-methylcitrate synthase compare
ABZR87_RS09465 -4.7 -7.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS07360 -4.6 -13.4 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS00190 -4.6 -11.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS09445 -4.5 -14.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS09935 -4.3 -4.2 amino acid aminotransferase compare
ABZR87_RS16660 -4.3 -7.4 helix-turn-helix domain-containing protein compare
ABZR87_RS14505 -4.3 -7.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS16140 -4.3 -16.2 phosphoenolpyruvate carboxylase compare
ABZR87_RS02565 -4.2 -7.6 glutamate synthase subunit beta compare
ABZR87_RS05200 -4.2 -15.7 homoserine O-acetyltransferase compare
ABZR87_RS16170 -4.2 -6.4 argininosuccinate lyase compare
ABZR87_RS00835 -4.2 -6.4 argininosuccinate synthase compare
ABZR87_RS07380 -4.2 -15.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS00285 -4.2 -2.9 acetylornithine transaminase compare
ABZR87_RS07060 -4.2 -17.6 RNA polymerase factor sigma-54 compare
ABZR87_RS14530 -4.1 -10.9 3-isopropylmalate dehydrogenase compare
ABZR87_RS11925 -4.0 -12.6 phosphoenolpyruvate synthase compare
ABZR87_RS02140 -4.0 -17.5 anthranilate synthase component I compare
ABZR87_RS16735 -3.9 -14.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS05170 -3.9 -4.6 acetylglutamate kinase compare
ABZR87_RS14955 -3.9 -7.3 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS11440 -3.8 -7.9 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS20875 -3.8 -5.7 LysR family transcriptional regulator compare
ABZR87_RS00210 -3.7 -9.0 nitrite/sulfite reductase compare
ABZR87_RS05100 -3.7 -6.8 RNA polymerase-binding protein DksA compare
ABZR87_RS16745 -3.6 -8.2 methylisocitrate lyase compare
ABZR87_RS08645 -3.4 -1.2 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS08625 -3.4 -2.3 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS06770 -3.3 -7.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS09450 -3.2 -9.9 prephenate dehydratase compare
ABZR87_RS14115 -3.2 -5.1 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS02590 -3.1 -10.0 3-dehydroquinate synthase compare
ABZR87_RS11125 -3.1 -8.0 cell division protein ZapE compare
ABZR87_RS00325 -3.0 -2.9 peptidylprolyl isomerase compare
ABZR87_RS07700 -3.0 -2.0 peptidylprolyl isomerase compare
ABZR87_RS10550 -3.0 -2.2 outer membrane protein assembly factor BamC compare
ABZR87_RS17145 -2.9 -13.5 AMP nucleosidase compare
ABZR87_RS15440 -2.9 -4.4 ribonuclease G compare
ABZR87_RS00185 -2.9 -5.1 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS16750 -2.8 -10.8 propionate catabolism operon regulatory protein PrpR compare
ABZR87_RS05590 -2.8 -3.3 orotate phosphoribosyltransferase compare
ABZR87_RS07050 -2.8 -1.7 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS01645 -2.8 -4.3 type II 3-dehydroquinate dehydratase compare
ABZR87_RS10565 -2.8 -6.0 cupin domain-containing protein compare
ABZR87_RS00195 -2.8 -3.7 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS00220 -2.7 -9.1 CysB family HTH-type transcriptional regulator compare
ABZR87_RS04865 -2.7 -6.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS06705 -2.7 -12.8 glutamate--cysteine ligase compare
ABZR87_RS12795 -2.6 -6.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00360 -2.6 -3.0 acyl-CoA desaturase compare
ABZR87_RS13705 -2.6 -1.7 integration host factor subunit alpha compare
ABZR87_RS10980 -2.6 -1.2 tRNA-Leu compare
ABZR87_RS05305 -2.5 -9.9 TetR family transcriptional regulator compare
ABZR87_RS00435 -2.5 -9.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS12785 -2.4 -3.7 endopeptidase La compare
ABZR87_RS00355 -2.4 -8.4 quinolinate synthase NadA compare
ABZR87_RS10120 -2.4 -1.8 YceD family protein compare
ABZR87_RS10400 -2.4 -4.3 hypothetical protein compare
ABZR87_RS01605 -2.4 -6.6 shikimate dehydrogenase compare
ABZR87_RS13300 -2.3 -9.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS13050 -2.1 -1.3 GpE family phage tail protein compare
ABZR87_RS04125 -2.1 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08655 -2.1 -5.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS00350 -2.1 -4.1 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS11815 -2.0 -6.6 [protein-PII] uridylyltransferase compare
ABZR87_RS13645 -2.0 -1.2 hypothetical protein compare
ABZR87_RS06710 -2.0 -10.6 glutathione synthase compare
ABZR87_RS02525 -2.0 -3.7 ABC transporter ATP-binding protein compare
ABZR87_RS14330 -2.0 -1.2 hypothetical protein compare
ABZR87_RS14890 -2.0 -1.4 preprotein translocase subunit SecG compare
ABZR87_RS17310 -2.0 -6.3 PadR family transcriptional regulator compare
ABZR87_RS07665 -1.9 -7.9 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS07625 -1.9 -2.5 Holliday junction branch migration protein RuvA compare
ABZR87_RS01780 -1.9 -1.8 MarC family protein compare
ABZR87_RS16960 -1.9 -5.2 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS05350 -1.8 -4.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS10240 -1.8 -2.9 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS01685 -1.8 -4.7 histone H1-like DNA-binding protein compare
ABZR87_RS04945 -1.8 -3.0 DUF4390 domain-containing protein compare
ABZR87_RS18165 -1.8 -2.3 hypothetical protein compare
ABZR87_RS06395 -1.7 -4.3 response regulator compare
ABZR87_RS16975 -1.7 -2.5 hypothetical protein compare
ABZR87_RS18105 -1.7 -1.4 hypothetical protein compare
ABZR87_RS01675 -1.6 -2.2 carbohydrate kinase family protein compare
ABZR87_RS04105 -1.6 -2.1 ATP synthase subunit I compare
ABZR87_RS02575 -1.6 -5.2 transposase compare
ABZR87_RS22690 -1.6 -3.2 XRE family transcriptional regulator compare
ABZR87_RS22340 -1.6 -2.1 hypothetical protein compare
ABZR87_RS13475 -1.6 -5.1 PAS domain S-box protein compare
ABZR87_RS12790 -1.6 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS13010 -1.6 -1.6 GPW/gp25 family protein compare
ABZR87_RS11760 -1.6 -0.9 membrane protein compare
ABZR87_RS10170 -1.5 -3.0 RseA family anti-sigma factor compare
ABZR87_RS00215 -1.5 -3.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS16185 -1.5 -2.2 dCTP deaminase compare
ABZR87_RS14380 -1.5 -4.4 glutamate racemase compare
ABZR87_RS12750 -1.5 -3.2 ABC transporter ATP-binding protein compare
ABZR87_RS02480 -1.5 -3.1 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS06845 -1.4 -5.8 heme o synthase compare
ABZR87_RS09635 -1.4 -1.8 ribosome small subunit-dependent GTPase A compare
ABZR87_RS06745 -1.4 -5.3 S41 family peptidase compare
ABZR87_RS20690 -1.4 -1.9 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS04785 -1.4 -6.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS07635 -1.4 -2.7 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS13350 -1.4 -4.7 potassium transporter Kup compare
ABZR87_RS22405 -1.4 -1.2 hypothetical protein compare
ABZR87_RS17440 -1.4 -1.6 (2Fe-2S)-binding protein compare
ABZR87_RS15395 -1.4 -2.8 uracil phosphoribosyltransferase compare
ABZR87_RS08700 -1.3 -4.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS14375 -1.3 -2.3 fumarate hydratase compare
ABZR87_RS19305 -1.3 -2.6 SctK family type III secretion system sorting platform protein compare
ABZR87_RS22300 -1.3 -1.0 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS00345 -1.2 -7.1 L-aspartate oxidase compare
ABZR87_RS10610 -1.2 -2.0 inositol monophosphatase family protein compare
ABZR87_RS14495 -1.2 -3.1 site-specific DNA-methyltransferase compare
ABZR87_RS12345 -1.2 -1.0 dethiobiotin synthase compare
ABZR87_RS01980 -1.2 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS12780 -1.2 -1.3 HU family DNA-binding protein compare
ABZR87_RS06030 -1.2 -1.2 AraC family transcriptional regulator compare
ABZR87_RS10175 -1.2 -4.2 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS06265 -1.2 -3.7 biotin synthase BioB compare
ABZR87_RS16250 -1.2 -3.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS10195 -1.2 -1.9 signal peptidase I compare
ABZR87_RS12615 -1.2 -3.1 branched-chain amino acid ABC transporter permease compare
ABZR87_RS09460 -1.1 -3.1 prephenate dehydrogenase compare
ABZR87_RS20145 -1.1 -2.7 hypothetical protein compare
ABZR87_RS12965 -1.1 -1.8 tail protein X compare
ABZR87_RS01615 -1.1 -0.5 RNB domain-containing ribonuclease compare
ABZR87_RS09895 -1.1 -1.1 DUF1841 family protein compare
ABZR87_RS12735 -1.1 -5.4 winged helix DNA-binding protein compare
ABZR87_RS15810 -1.1 -3.6 hypothetical protein compare
ABZR87_RS21795 -1.1 -3.1 NUDIX domain-containing protein compare
ABZR87_RS11010 -1.1 -1.5 oxidative damage protection protein compare
ABZR87_RS01700 -1.0 -1.1 DUF2147 domain-containing protein compare
ABZR87_RS15405 -1.0 -2.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS00970 -1.0 -1.1 molecular chaperone DnaJ compare
ABZR87_RS22585 -1.0 -1.1 methyl-accepting chemotaxis protein compare
ABZR87_RS11970 -1.0 -1.7 hypothetical protein compare
ABZR87_RS19100 -1.0 -1.5 RidA family protein compare
ABZR87_RS18320 -1.0 -2.6 HEAT repeat domain-containing protein compare
ABZR87_RS20730 -1.0 -1.2 hypothetical protein compare
ABZR87_RS05205 -1.0 -2.5 methionine biosynthesis protein MetW compare
ABZR87_RS22010 -1.0 -2.6 hypothetical protein compare
ABZR87_RS08695 -1.0 -5.7 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS20665 -0.9 -2.4 IclR family transcriptional regulator compare
ABZR87_RS13390 -0.9 -2.0 hypothetical protein compare
ABZR87_RS11245 -0.9 -3.1 translational GTPase TypA compare
ABZR87_RS00865 -0.9 -0.9 VTT domain-containing protein compare
ABZR87_RS11940 -0.9 -2.5 SsrA-binding protein SmpB compare
ABZR87_RS07385 -0.9 -1.0 HIT family protein compare
ABZR87_RS16165 -0.9 -0.6 anti-sigma factor compare
ABZR87_RS17845 -0.9 -2.4 Crp/Fnr family transcriptional regulator compare
ABZR87_RS13285 -0.9 -5.3 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS09515 -0.9 -0.9 cysteine synthase CysM compare
ABZR87_RS17115 -0.9 -1.9 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS11525 -0.9 -1.2 molybdopterin-binding protein compare
ABZR87_RS17650 -0.9 -3.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS05025 -0.9 -1.7 rod shape-determining protein MreC compare
ABZR87_RS02035 -0.9 -2.8 substrate-binding domain-containing protein compare
ABZR87_RS06825 -0.9 -1.1 twin transmembrane helix small protein compare
ABZR87_RS15645 -0.9 -1.6 exodeoxyribonuclease VII small subunit compare
ABZR87_RS21940 -0.9 -0.6 hypothetical protein compare
ABZR87_RS08750 -0.9 -3.9 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS05140 -0.8 -1.3 ATP-binding protein compare
ABZR87_RS16270 -0.8 -1.2 cold-shock protein compare
ABZR87_RS10085 -0.8 -1.7 Rne/Rng family ribonuclease compare
ABZR87_RS10785 -0.8 -3.1 exodeoxyribonuclease V subunit beta compare
ABZR87_RS08875 -0.8 -1.8 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS10620 -0.8 -1.2 serine O-acetyltransferase compare
ABZR87_RS08610 -0.8 -2.5 YqgE/AlgH family protein compare
ABZR87_RS06495 -0.8 -1.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS02485 -0.8 -0.5 MarC family protein compare
ABZR87_RS10780 -0.8 -2.9 PD-(D/E)XK nuclease family protein compare
ABZR87_RS16330 -0.8 -2.2 branched-chain amino acid ABC transporter permease compare
ABZR87_RS18975 -0.8 -1.2 entericidin A/B family lipoprotein compare
ABZR87_RS00665 -0.8 -2.0 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS00830 -0.8 -1.4 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS08990 -0.8 -2.4 peptidoglycan-associated lipoprotein Pal compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source Valeric acid across organisms