Experiment set9IT067 for Sinorhizobium meliloti 1021

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
SMc00236 -8.1 -5.6 Indole-3-glycerol phosphate synthase compare
SMc02767 -7.4 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02766 -7.1 -16.5 tryptophan synthase subunit beta compare
SMc01843 -6.8 -11.3 5,10-methylenetetrahydrofolate reductase compare
SMc03797 -6.6 -10.1 homoserine O-succinyltransferase compare
SMc04405 -6.5 -10.0 3-isopropylmalate dehydrogenase compare
SMc01726 -6.5 -5.6 acetylglutamate kinase compare
SMc00711 -6.4 -4.4 cyclohexadienyl dehydrogenase compare
SMa1635 -6.4 -2.5 hypothetical protein compare
SMc04045 -6.4 -7.6 dihydroxy-acid dehydratase compare
SMc02899 -6.3 -11.4 prephenate dehydratase compare
SMc00918 -6.3 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
SMc00494 -6.1 -2.4 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc03776 -6.1 -4.2 gamma-glutamyl kinase compare
SMc01801 -6.0 -3.9 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc00090 -6.0 -9.1 sulfate adenylyltransferase compare
SMc02717 -5.9 -12.6 2-isopropylmalate synthase compare
SMc01494 -5.9 -10.6 phosphoserine phosphatase compare
SMc02838 -5.9 -7.1 phosphoglyceromutase compare
SMc00493 -5.8 -6.9 phosphoribosylformylglycinamidine synthase I compare
SMc02217 -5.8 -5.6 O-succinylhomoserine sulfhydrylase compare
SMc02562 -5.8 -6.9 phosphoenolpyruvate carboxykinase compare
SMc02725 -5.8 -12.3 anthranilate synthase compare
SMc04002 -5.7 -8.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00131 -5.7 -17.7 transcriptional regulator compare
SMc04028 -5.6 -17.0 glutamate synthase compare
SMc03112 -5.6 -17.0 B12-dependent methionine synthase compare
SMc00640 -5.6 -8.5 phosphoserine aminotransferase compare
SMc01028 -5.5 -15.8 phosphopyruvate hydratase compare
SMc03823 -5.5 -10.6 isopropylmalate isomerase large subunit compare
SMc02123 -5.4 -4.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02569 -5.4 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
SMc02572 -5.4 -4.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc01054 -5.4 -6.3 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc02765 -5.4 -12.2 tryptophan synthase subunit alpha compare
SMc00917 -5.3 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc01431 -5.3 -15.9 acetolactate synthase 3 catalytic subunit compare
SM_b20613 -5.3 -13.1 C4-dicarboxylate transport transcriptional regulator compare
SMc02574 -5.2 -7.2 imidazoleglycerol-phosphate dehydratase compare
SMc00495 -5.2 -7.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03979 -5.2 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
SMc03981 -5.1 -4.7 phosphoglycerate kinase compare
SMc00615 -5.1 -11.6 phosphoribosylaminoimidazole synthetase compare
SMc00412 -5.0 -3.5 orotidine 5'-phosphate decarboxylase compare
SMc00092 -5.0 -11.2 phosphoadenosine phosphosulfate reductase compare
SMc00993 -5.0 -11.2 phosphoribosylamine--glycine ligase compare
SMc00235 -4.9 -9.1 anthranilate phosphoribosyltransferase compare
SMc02124 -4.9 -13.3 nitrite reductase compare
SMc04088 -4.8 -10.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00488 -4.8 -16.0 phosphoribosylformylglycinamidine synthase II compare
SMc02245 -4.7 -5.6 dihydroorotate dehydrogenase 2 compare
SMc01004 -4.7 -10.2 phosphoribosyl-AMP cyclohydrolase compare
SMc03777 -4.7 -7.8 gamma-glutamyl phosphate reductase compare
SM_b20611 -4.6 -14.4 C4-dicarboxylate transporter DctA conserved
SMc00091 -4.6 -12.3 sulfate adenylyltransferase compare
SM_b20612 -4.6 -11.5 C4-dicarboxylate transport sensor protein conserved
SMc02137 -4.6 -4.4 ornithine carbamoyltransferase compare
SM_b21176 -4.5 -5.8 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02165 -4.5 -6.1 orotate phosphoribosyltransferase compare
SMc02166 -4.5 -12.1 dihydroorotase compare
SMc00293 -4.3 -10.8 homoserine dehydrogenase compare
SM_b21174 -4.2 -5.2 phosphate uptake ABC transporter permease compare
SMc04026 -4.2 -8.1 glutamate synthase compare
SMc00614 -4.1 -5.7 phosphoribosylglycinamide formyltransferase compare
SMc02307 -4.0 -8.1 histidinol dehydrogenase compare
SMc02570 -3.9 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02138 -3.9 -8.4 acetylornithine transaminase compare
SMc03795 -3.9 -2.1 isopropylmalate isomerase small subunit compare
SMc01139 -3.9 -5.6 RNA polymerase factor sigma-54 compare
SM_b21177 -3.8 -9.3 phosphate uptake ABC transporter ATP-binding protein compare
SMc01053 -3.8 -5.4 siroheme synthase compare
SMc00554 -3.8 -8.2 amidophosphoribosyltransferase compare
SMc00294 -3.6 -10.4 aminotransferase compare
SMc00017 -3.6 -1.8 homoserine kinase compare
SMc02707 -3.4 -4.4 hypothetical protein compare
SMc00641 -3.3 -5.9 D-3-phosphoglycerate dehydrogenase compare
SMc02246 -3.3 -1.2 hypothetical protein compare
SMc02755 -3.2 -6.1 S-adenosyl-L-homocysteine hydrolase compare
SMc01770 -3.2 -2.1 serine hydroxymethyltransferase compare
SMc01207 -3.2 -2.2 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc04346 -3.1 -5.0 ketol-acid reductoisomerase compare
SMc03069 -3.0 -3.2 6-phosphogluconolactonase compare
SMc01881 -2.9 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00876 -2.8 -3.8 ATP-binding MRP protein compare
SMc01361 -2.6 -2.5 dihydroorotase compare
SMc01206 -2.6 -1.9 queuine tRNA-ribosyltransferase compare
SMc02858 -2.6 -1.0 chaperone protein DnaJ compare
SMc04001 -2.5 -1.6 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01360 -2.5 -3.3 aspartate carbamoyltransferase catalytic subunit compare
SMc02055 -2.3 -2.6 phytoene synthase compare
SM_b21175 -2.2 -3.3 phosphate uptake ABC transporter permease compare
SMc01441 -2.2 -6.3 membrane bound protease compare
SMc01880 -2.2 -1.5 pantoate--beta-alanine ligase compare
SMc00169 -2.1 -14.0 malic enzyme compare
SMc02983 -2.1 -8.2 ornithine, DAP, or arginine decarboxylase compare
SMc03978 -2.1 -1.4 transketolase compare
SMc02640 -2.1 -5.0 UDP-glucuronic acid epimerase compare
SMc02778 -2.1 -1.6 hydroxyacid aldolase compare
SMc02641 -2.1 -2.4 UDP-glucose 6-dehydrogenase compare
SMc00982 -1.9 -6.0 dioxygenase compare
SMc03229 -1.9 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc04003 -1.9 -1.7 50S ribosomal protein L36 compare
SMc01440 -1.9 -4.9 hydrolase serine protease transmembrane protein compare
SMc02495 -1.9 -1.4 translaldolase compare
SMa1017 -1.8 -3.0 hypothetical protein compare
SMc02897 -1.7 -2.6 cytochrome C transmembrane protein compare
SMc01430 -1.7 -4.9 acetolactate synthase 3 regulatory subunit compare
SMc04391 -1.7 -2.7 3-ketoacyl-ACP reductase compare
SMc00352 -1.6 -2.1 acetyltransferase compare
SMc00295 -1.6 -1.4 hypothetical protein compare
SMc02850 -1.6 -1.5 DNA polymerase I compare
SMc03996 -1.6 -4.0 thiamine-phosphate pyrophosphorylase compare
SMc00580 -1.6 -2.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01220 -1.5 -3.9 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc01845 -1.5 -1.4 transglycosylase transmembrane protein compare
SMc01124 -1.5 -6.9 PII uridylyl-transferase compare
SMc00012 -1.5 -1.1 cytochrome C oxidase assembly protein compare
SMc00914 -1.5 -2.6 oxidoreductase compare
SMc01568 -1.5 -1.3 hypothetical protein compare
SMc01842 -1.4 -1.5 methyltransferase transcription regulator protein compare
SMc01578 -1.4 -6.4 aspartate aminotransferase compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SM_b20307 -1.3 -1.2 dihydroxyacetone kinase compare
SMc00565 -1.3 -1.4 50S ribosomal protein L9 compare
SMc00461 -1.3 -1.5 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc01368 -1.3 -4.3 transport transmembrane protein compare
SMa2215 -1.2 -2.9 GntR family transcriptional regulator compare
SMc03850 -1.2 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02975 -1.2 -6.1 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc02544 -1.2 -1.0 hypothetical protein compare
SMc03839 -1.2 -1.4 hypothetical protein compare
SMc00760 -1.2 -2.9 recombinase A compare
SMc03836 -1.2 -1.6 acyl-CoA thioesterase i protein compare
SMc04348 -1.1 -1.0 transcriptional regulator compare
SMa0450 -1.1 -2.0 hypothetical protein compare
SMc00010 -1.1 -1.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc00761 -1.1 -6.2 oxidoreductase compare
SMc02659 -1.1 -3.4 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc03980 -1.1 -2.9 hypothetical protein compare
SMc02906 -1.1 -0.9 hypothetical protein compare
SMc02050 -1.1 -2.3 trigger factor compare
SMc02694 -1.1 -1.5 ATP-dependent Clp protease adaptor compare
SMc01041 -1.0 -1.8 NIFR3-like protein compare
SMc04454 -1.0 -4.5 ABC transporter ATP-binding protein compare
SMc01091 -1.0 -1.4 hypothetical protein compare
SMa5033 -1.0 -1.2 hypothetical protein compare
SMc01342 -1.0 -3.0 hypothetical protein compare
SMc01852 -1.0 -5.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc02077 -1.0 -2.2 exodeoxyribonuclease III protein compare
SMc00492 -1.0 -0.6 hypothetical protein compare
SMc02485 -1.0 -1.3 signal peptide protein compare
SMc00800 -1.0 -1.0 hypothetical protein compare
SMc00334 -1.0 -0.8 cytidylate kinase compare
SMc00556 -1.0 -3.4 DNA repair protein RadA compare
SMc02677 -1.0 -3.3 pyrroline-5-carboxylate reductase compare
SMc02107 -0.9 -1.1 hypothetical protein compare
SMc04453 -0.9 -1.0 hypothetical protein compare
SMc00405 -0.9 -4.2 hypothetical protein compare
SMc01579 -0.9 -1.2 hypothetical protein compare
SMc02685 -0.9 -2.0 hypothetical protein compare
SMc01800 -0.9 -0.6 cytochrome C oxidase assembly transmembrane protein compare
SMc02867 -0.9 -1.5 multidrug-efflux system transmembrane protein compare
SMc00191 -0.9 -1.5 hypothetical protein compare
SMc02724 -0.8 -1.5 hypothetical protein compare
SMc00981 -0.8 -3.5 ferredoxin protein compare
SMc01097 -0.8 -2.8 hypothetical protein compare
SMc00859 -0.8 -1.5 hypothetical protein compare
SMc00414 -0.8 -6.0 hypothetical protein compare
SMc02172 -0.8 -3.6 transcriptional regulator compare
SM_b20089 -0.8 -2.2 hypothetical protein compare
SMc02232 -0.8 -1.6 hypothetical protein compare
SM_b20452 -0.8 -1.5 hypothetical protein compare
SMc02695 -0.8 -3.0 GTP-dependent nucleic acid-binding protein EngD compare
SMa1570 -0.8 -1.1 PilA2 pilus assembly protein compare
SMc01208 -0.8 -1.4 peptidyl-prolyl cis-trans isomerase B protein compare
SM_b20647 -0.8 -3.0 hypothetical protein compare
SMc00450 -0.8 -0.8 protoheme IX farnesyltransferase compare
SMc01110 -0.8 -3.2 DNA-binding protein compare
SM_b20282 -0.7 -1.7 spermidine/putrescine ABC transporter permease compare
SM_b21347 -0.7 -0.8 pectin degradation protein compare
SMc02141 -0.7 -1.3 phosphate transporter PhoU compare
SMc01042 -0.7 -3.1 nitrogen regulation protein compare
SMc03826 -0.7 -0.4 argininosuccinate synthase compare
SMc01991 -0.7 -1.0 short chain dehydrogenase compare
SMc00187 -0.7 -1.3 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc02051 -0.7 -1.5 hypothetical protein compare
SM_b20953 -0.7 -0.8 hypothetical protein compare
SMc02117 -0.7 -4.5 cystathionine beta-lyase compare
SMc02058 -0.7 -1.3 YAJC protein compare
SM_b20746 -0.7 -0.9 hypothetical protein compare
SMc02362 -0.7 -0.7 cytochrome c-type biogenesis protein CcmE compare
SMa0222 -0.7 -0.8 GntR family transcriptional regulator compare
SMc01119 -0.7 -1.3 hypothetical protein compare
SMc01438 -0.7 -2.6 protease precursor signal peptide protein compare
SMa1413 -0.7 -1.1 hypothetical protein compare
SM_b21580 -0.7 -0.9 hypothetical protein compare
SMc00775 -0.7 -4.7 iron(III) permease compare
SM_b20294 -0.6 -1.1 transcriptional regulator NanR compare
SMc02862 -0.6 -2.9 Pit accessory protein compare
SMc01222 -0.6 -3.8 lipopolysaccharide core biosynthesis glycosyl transferase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium Fumarate dibasic in Sinorhizobium meliloti 1021

For carbon source Sodium Fumarate dibasic across organisms