Experiment set9IT067 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -6.4 -4.0 phosphoserine phosphatase SerB compare
ABZR87_RS02565 -6.2 -4.2 glutamate synthase subunit beta compare
ABZR87_RS14500 -5.8 -14.4 tryptophan synthase subunit beta compare
ABZR87_RS09465 -5.7 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS13790 -5.6 -6.7 chorismate synthase compare
ABZR87_RS02160 -5.5 -6.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02570 -5.5 -25.7 glutamate synthase-related protein compare
ABZR87_RS21795 -5.5 -7.7 NUDIX domain-containing protein compare
ABZR87_RS01810 -5.5 -3.8 glutamate 5-kinase compare
ABZR87_RS14535 -5.5 -8.3 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS20880 -5.4 -8.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS09445 -5.4 -12.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS09450 -5.4 -9.6 prephenate dehydratase compare
ABZR87_RS14530 -5.3 -8.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS14950 -5.2 -5.2 acetolactate synthase small subunit compare
ABZR87_RS22970 -5.0 -15.2 cystathionine gamma-synthase family protein compare
ABZR87_RS14505 -5.0 -7.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS02595 -5.0 -11.1 shikimate kinase compare
ABZR87_RS04975 -5.0 -3.4 peptide deformylase compare
ABZR87_RS17485 -4.9 -8.1 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS11440 -4.9 -9.3 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS02140 -4.8 -20.4 anthranilate synthase component I compare
ABZR87_RS16170 -4.7 -6.4 argininosuccinate lyase compare
ABZR87_RS09935 -4.7 -3.2 amino acid aminotransferase compare
ABZR87_RS00190 -4.6 -13.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS07380 -4.6 -13.8 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14540 -4.5 -7.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS07360 -4.5 -13.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14955 -4.5 -3.1 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00835 -4.4 -6.8 argininosuccinate synthase compare
ABZR87_RS05200 -4.4 -14.5 homoserine O-acetyltransferase compare
ABZR87_RS00285 -4.4 -3.0 acetylornithine transaminase compare
ABZR87_RS06770 -4.4 -7.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS14490 -4.4 -12.8 tryptophan synthase subunit alpha compare
ABZR87_RS01110 -4.2 -11.7 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS11625 -4.1 -9.9 malate synthase A compare
ABZR87_RS04865 -4.1 -4.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02155 -4.0 -5.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS02145 -3.9 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS09555 -3.9 -8.9 acyl-CoA dehydrogenase compare
ABZR87_RS02640 -3.9 -14.4 diaminopimelate decarboxylase compare
ABZR87_RS17475 -3.9 -7.1 3-hydroxyisobutyrate dehydrogenase conserved
ABZR87_RS02590 -3.8 -12.1 3-dehydroquinate synthase compare
ABZR87_RS10275 -3.8 -3.1 DUF5818 domain-containing protein compare
ABZR87_RS00200 -3.8 -4.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS05170 -3.8 -6.7 acetylglutamate kinase compare
ABZR87_RS00220 -3.7 -10.7 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00210 -3.7 -10.5 nitrite/sulfite reductase compare
ABZR87_RS07665 -3.7 -10.7 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS05590 -3.6 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS06645 -3.6 -2.5 TlpA disulfide reductase family protein compare
ABZR87_RS08625 -3.6 -2.5 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS16165 -3.6 -1.1 anti-sigma factor compare
ABZR87_RS13415 -3.6 -9.7 IclR family transcriptional regulator compare
ABZR87_RS17455 -3.5 -6.1 AraC family transcriptional regulator conserved
ABZR87_RS14890 -3.4 -1.5 preprotein translocase subunit SecG compare
ABZR87_RS13375 -3.2 -6.8 NUDIX hydrolase compare
ABZR87_RS12795 -3.2 -6.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS10565 -3.2 -6.6 cupin domain-containing protein compare
ABZR87_RS10240 -3.1 -3.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS05100 -3.1 -5.8 RNA polymerase-binding protein DksA compare
ABZR87_RS12790 -3.0 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS20875 -3.0 -4.8 LysR family transcriptional regulator compare
ABZR87_RS08630 -3.0 -7.4 dihydroorotase compare
ABZR87_RS00435 -3.0 -10.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS00185 -3.0 -4.8 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00205 -3.0 -3.1 DUF934 domain-containing protein compare
ABZR87_RS07050 -2.9 -1.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS06705 -2.9 -12.9 glutamate--cysteine ligase compare
ABZR87_RS16660 -2.8 -6.1 helix-turn-helix domain-containing protein compare
ABZR87_RS02235 -2.8 -6.2 response regulator compare
ABZR87_RS01615 -2.8 -3.1 RNB domain-containing ribonuclease compare
ABZR87_RS10120 -2.8 -2.6 YceD family protein compare
ABZR87_RS16960 -2.7 -5.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS11125 -2.6 -8.6 cell division protein ZapE compare
ABZR87_RS01640 -2.5 -3.4 TlpA disulfide reductase family protein compare
ABZR87_RS07035 -2.5 -10.1 RNase adapter RapZ compare
ABZR87_RS07625 -2.5 -3.3 Holliday junction branch migration protein RuvA compare
ABZR87_RS14115 -2.5 -3.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS11195 -2.5 -10.0 pseudouridine synthase compare
ABZR87_RS06845 -2.4 -8.9 heme o synthase compare
ABZR87_RS12785 -2.4 -5.2 endopeptidase La compare
ABZR87_RS02480 -2.4 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS02225 -2.3 -10.2 ATP-binding protein compare
ABZR87_RS06710 -2.3 -11.5 glutathione synthase compare
ABZR87_RS00195 -2.3 -4.7 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS07700 -2.3 -3.0 peptidylprolyl isomerase compare
ABZR87_RS17215 -2.2 -6.9 1,4-alpha-glucan branching protein GlgB compare
ABZR87_RS10620 -2.2 -2.7 serine O-acetyltransferase compare
ABZR87_RS08655 -2.2 -5.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS17470 -2.2 -4.7 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
ABZR87_RS05305 -2.2 -7.9 TetR family transcriptional regulator compare
ABZR87_RS16250 -2.2 -5.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS16180 -2.1 -5.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS08875 -2.1 -3.4 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS15810 -2.1 -3.2 hypothetical protein compare
ABZR87_RS05350 -2.0 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00355 -2.0 -8.6 quinolinate synthase NadA compare
ABZR87_RS17465 -2.0 -5.4 AMP-binding protein conserved
ABZR87_RS00580 -2.0 -3.7 hypothetical protein compare
ABZR87_RS04125 -2.0 -5.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS21285 -2.0 -1.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS00350 -2.0 -3.2 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS07705 -2.0 -5.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS13285 -1.9 -8.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS06030 -1.9 -1.4 AraC family transcriptional regulator compare
ABZR87_RS01605 -1.9 -6.6 shikimate dehydrogenase compare
ABZR87_RS17650 -1.9 -6.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06395 -1.9 -4.8 response regulator compare
ABZR87_RS05145 -1.9 -1.7 copper chaperone PCu(A)C compare
ABZR87_RS05130 -1.8 -1.2 CsbD family protein compare
ABZR87_RS13300 -1.8 -6.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07510 -1.8 -3.8 LysR family transcriptional regulator compare
ABZR87_RS04945 -1.8 -2.9 DUF4390 domain-containing protein compare
ABZR87_RS08695 -1.8 -9.3 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS06405 -1.7 -1.2 hypothetical protein compare
ABZR87_RS21815 -1.7 -0.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS18105 -1.7 -1.9 hypothetical protein compare
ABZR87_RS09515 -1.7 -1.5 cysteine synthase CysM compare
ABZR87_RS03420 -1.7 -0.9 type II secretion system minor pseudopilin GspI compare
ABZR87_RS01645 -1.7 -3.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS17310 -1.6 -4.9 PadR family transcriptional regulator compare
ABZR87_RS00215 -1.6 -3.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS08700 -1.6 -5.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS20450 -1.6 -1.5 HAD family phosphatase compare
ABZR87_RS01885 -1.5 -3.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS17460 -1.5 -1.9 acyl-CoA dehydrogenase compare
ABZR87_RS00345 -1.5 -7.6 L-aspartate oxidase compare
ABZR87_RS06745 -1.5 -4.7 S41 family peptidase compare
ABZR87_RS11815 -1.5 -5.9 [protein-PII] uridylyltransferase compare
ABZR87_RS14970 -1.5 -4.2 DUF3106 domain-containing protein compare
ABZR87_RS21245 -1.5 -1.2 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS09035 -1.5 -5.6 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS01685 -1.4 -3.4 histone H1-like DNA-binding protein compare
ABZR87_RS00875 -1.4 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS04640 -1.4 -2.6 hypothetical protein compare
ABZR87_RS01035 -1.4 -2.5 histidine utilization repressor compare
ABZR87_RS05025 -1.4 -1.9 rod shape-determining protein MreC compare
ABZR87_RS02445 -1.4 -4.1 Sec-independent protein translocase protein TatB compare
ABZR87_RS13475 -1.4 -5.7 PAS domain S-box protein compare
ABZR87_RS06495 -1.4 -1.8 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS10525 -1.3 -1.5 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS14575 -1.3 -3.0 GntR family transcriptional regulator compare
ABZR87_RS00440 -1.3 -6.2 ATP-dependent Clp protease adapter ClpS compare
ABZR87_RS10820 -1.3 -3.4 LysR substrate-binding domain-containing protein compare
ABZR87_RS04785 -1.3 -5.8 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS12425 -1.3 -1.7 ABC transporter ATP-binding protein compare
ABZR87_RS09930 -1.2 -7.3 polyhydroxyalkanoate depolymerase compare
ABZR87_RS04120 -1.2 -3.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR87_RS17315 -1.2 -3.2 MarR family transcriptional regulator compare
ABZR87_RS01675 -1.2 -1.7 carbohydrate kinase family protein compare
ABZR87_RS01555 -1.2 -1.1 barstar family protein compare
ABZR87_RS08025 -1.2 -3.0 DUF2946 family protein compare
ABZR87_RS16845 -1.2 -0.9 hypothetical protein compare
ABZR87_RS15955 -1.2 -1.6 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS13175 -1.2 -1.1 tRNA-Leu compare
ABZR87_RS10085 -1.2 -1.5 Rne/Rng family ribonuclease compare
ABZR87_RS01055 -1.2 -4.4 heat-inducible transcriptional repressor HrcA compare
ABZR87_RS04880 -1.2 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS07675 -1.2 -4.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS16125 -1.2 -3.0 heme biosynthesis protein HemY compare
ABZR87_RS03565 -1.1 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS22405 -1.1 -1.1 hypothetical protein compare
ABZR87_RS05140 -1.1 -2.1 ATP-binding protein compare
ABZR87_RS09635 -1.1 -1.8 ribosome small subunit-dependent GTPase A compare
ABZR87_RS09460 -1.1 -2.0 prephenate dehydrogenase compare
ABZR87_RS02180 -1.1 -7.2 M61 family metallopeptidase compare
ABZR87_RS22750 -1.1 -2.4 response regulator transcription factor compare
ABZR87_RS16540 -1.1 -1.1 MarR family transcriptional regulator compare
ABZR87_RS14135 -1.1 -2.6 transcription elongation factor GreA compare
ABZR87_RS10175 -1.1 -4.5 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS22690 -1.1 -1.9 XRE family transcriptional regulator compare
ABZR87_RS06315 -1.0 -6.1 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS10170 -1.0 -2.7 RseA family anti-sigma factor compare
ABZR87_RS07385 -1.0 -1.2 HIT family protein compare
ABZR87_RS02575 -1.0 -3.3 transposase compare
ABZR87_RS09510 -1.0 -2.6 helix-hairpin-helix domain-containing protein compare
ABZR87_RS11245 -1.0 -3.3 translational GTPase TypA compare
ABZR87_RS16080 -1.0 -2.2 P-II family nitrogen regulator compare
ABZR87_RS03195 -1.0 -6.2 cation diffusion facilitator family transporter compare
ABZR87_RS00970 -1.0 -1.2 molecular chaperone DnaJ compare
ABZR87_RS10980 -1.0 -0.9 tRNA-Leu compare
ABZR87_RS02680 -0.9 -4.8 c-type cytochrome compare
ABZR87_RS09615 -0.9 -0.7 50S ribosomal protein L19 compare
ABZR87_RS06715 -0.9 -2.0 PTS sugar transporter subunit IIA compare
ABZR87_RS02440 -0.9 -4.0 twin-arginine translocase subunit TatC compare
ABZR87_RS07880 -0.9 -1.5 hypothetical protein compare
ABZR87_RS11550 -0.9 -3.3 sulfate ABC transporter ATP-binding protein compare
ABZR87_RS06300 -0.9 -1.9 SDR family oxidoreductase compare
ABZR87_RS02375 -0.9 -5.4 cytochrome c1 compare
ABZR87_RS07760 -0.9 -1.4 HlyC/CorC family transporter compare
ABZR87_RS06830 -0.9 -3.4 SURF1 family protein compare
ABZR87_RS02525 -0.9 -1.4 ABC transporter ATP-binding protein compare
ABZR87_RS08555 -0.9 -0.5 hypothetical protein compare
ABZR87_RS09625 -0.9 -4.3 CobD/CbiB family protein compare
ABZR87_RS17865 -0.9 -1.2 cation:proton antiporter compare
ABZR87_RS08070 -0.9 -0.8 pyruvate kinase compare
ABZR87_RS08645 -0.9 -0.5 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS15605 -0.9 -1.3 hypothetical protein compare
ABZR87_RS20555 -0.9 -3.2 helix-turn-helix transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium butyrate in Ralstonia sp. UNC404CL21Col

For carbon source Sodium butyrate across organisms