Experiment set9IT063 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Biochanin a diacetate 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_4686 -3.3 -8.6 8-amino-7-oxononanoate synthase compare
Psyr_0034 -3.3 -3.9 tryptophan synthase, beta chain compare
Psyr_4340 -3.3 -12.2 phosphomethylpyrimidine kinase, putative compare
Psyr_4341 -3.2 -9.9 thiamine-phosphate diphosphorylase compare
Psyr_4683 -3.2 -7.5 dethiobiotin synthase compare
Psyr_4091 -3.2 -6.9 8-oxo-dGTPase compare
Psyr_4687 -2.9 -10.6 biotin synthase compare
Psyr_1544 -2.9 -6.6 SirA-like protein compare
Psyr_0951 -2.8 -3.7 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0454 -2.7 -7.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0033 -2.7 -3.2 tryptophan synthase, alpha chain compare
Psyr_4740 -2.5 -6.5 thiazole-phosphate synthase compare
Psyr_2980 -2.4 -5.0 UDP-glucose pyrophosphorylase compare
Psyr_4203 -2.2 -3.1 SsrA-binding protein compare
Psyr_4362 -2.2 -4.5 Rare lipoprotein A compare
Psyr_1613 -2.1 -6.0 septum site-determining protein MinC compare
Psyr_0475 -2.1 -4.0 Protein of unknown function YGGT compare
Psyr_4684 -1.9 -4.3 biotin synthesis protein BioC compare
Psyr_3419 -1.8 -4.9 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_2594 -1.8 -2.0 unknown conserved protein in bacilli compare
Psyr_0835 -1.8 -6.3 transcriptional regulator, TraR/DksA family compare
Psyr_4519 -1.7 -6.5 General substrate transporter:Major facilitator superfamily compare
Psyr_0487 -1.6 -2.9 glutathione synthase compare
Psyr_0070 -1.6 -2.5 hypothetical protein compare
Psyr_5132 -1.6 -4.2 Glucose-inhibited division protein A subfamily compare
Psyr_4991 -1.6 -2.5 hypothetical protein compare
Psyr_0571 -1.5 -4.4 tRNA isopentenyltransferase compare
Psyr_5135 -1.5 -0.8 Protein of unknown function DUF37 compare
Psyr_2383 -1.4 -3.4 Protein of unknown function DUF72 compare
Psyr_1227 -1.4 -3.0 Queuosine biosynthesis protein compare
Psyr_3020 -1.4 -1.6 precorrin-4 C11-methyltransferase compare
Psyr_1747 -1.4 -5.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2137 -1.4 -3.0 molybdopterin molybdochelatase compare
Psyr_3287 -1.4 -1.8 DNA topoisomerase I compare
Psyr_4627 -1.3 -2.4 dimethyladenosine transferase compare
Psyr_3193 -1.3 -2.4 Transcription factor jumonji, jmjC compare
Psyr_3208 -1.3 -2.0 NADH dehydrogenase subunit M compare
Psyr_0383 -1.3 -1.1 Twin-arginine translocation protein TatB compare
Psyr_2150 -1.3 -3.4 protein of unknown function DUF903 compare
Psyr_1373 -1.2 -2.6 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0831 -1.2 -2.9 Two-component response regulator CbrB compare
Psyr_4464 -1.2 -1.6 lipoprotein, putative compare
Psyr_1371 -1.2 -5.3 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_2829 -1.2 -2.8 conserved hypothetical protein compare
Psyr_0549 -1.2 -2.6 Metallophosphoesterase compare
Psyr_3427 -1.2 -2.7 conserved hypothetical protein compare
Psyr_4580 -1.2 -3.7 anthranilate phosphoribosyltransferase compare
Psyr_0255 -1.2 -2.1 glutamate-cysteine ligase compare
Psyr_1410 -1.2 -3.7 Holliday junction DNA helicase RuvB compare
Psyr_1024 -1.2 -2.4 Flavodoxin/nitric oxide synthase compare
Psyr_2088 -1.2 -2.4 2-methylaconitate cis-trans isomerase compare
Psyr_0917 -1.1 -7.7 ABC-2 compare
Psyr_4161 -1.1 -2.4 Rod shape-determining protein MreD compare
Psyr_4581 -1.1 -2.1 anthranilate synthase, component II compare
Psyr_4089 -1.1 -4.8 PAS compare
Psyr_4158 -1.1 -6.2 conserved hypothetical protein compare
Psyr_2879 -1.1 -2.4 VirK compare
Psyr_4051 -1.1 -2.9 transcriptional regulator, ArsR family compare
Psyr_3342 -1.1 -2.8 conserved hypothetical protein compare
Psyr_2593 -1.1 -2.4 ABC transporter compare
Psyr_3904 -1.0 -5.4 Major intrinsic protein compare
Psyr_0531 -1.0 -2.7 LmbE-like protein compare
Psyr_2591 -1.0 -4.6 transport system permease protein compare
Psyr_5067 -1.0 -3.5 conserved hypothetical protein compare
Psyr_4897 -1.0 -2.4 imidazoleglycerol-phosphate dehydratase compare
Psyr_2264 -1.0 -2.2 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_0574 -1.0 -3.6 protease FtsH subunit HflK compare
Psyr_4194 -1.0 -4.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4151 -1.0 -1.4 Phosphocarrier HPr protein compare
Psyr_0918 -1.0 -7.0 ABC transporter compare
Psyr_1198 -1.0 -1.6 type III secretion protein HrpF compare
Psyr_3698 -1.0 -3.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4138 -0.9 -2.4 Toluene tolerance compare
Psyr_5102 -0.9 -3.0 ABC transporter compare
Psyr_0838 -0.9 -1.8 Rieske [2Fe-2S] region compare
Psyr_1372 -0.9 -2.6 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_4566 -0.9 -5.6 Peptidase M23B compare
Psyr_2854 -0.9 -4.1 conserved hypothetical protein compare
Psyr_1530 -0.9 -2.9 hypothetical protein compare
Psyr_0674 -0.9 -1.6 Protein of unknown function UPF0029 compare
Psyr_3688 -0.9 -1.6 conserved hypothetical protein compare
Psyr_2180 -0.9 -2.1 transcriptional regulator, LysR family compare
Psyr_2582 -0.9 -4.9 TonB-dependent siderophore receptor compare
Psyr_0385 -0.9 -2.1 phosphoribosyl-ATP pyrophosphatase compare
Psyr_2897 -0.9 -3.5 regulatory protein, LuxR:Response regulator receiver compare
Psyr_1317 -0.9 -1.7 conserved hypothetical protein compare
Psyr_5133 -0.9 -2.7 tRNA modification GTPase trmE compare
Psyr_3289 -0.8 -1.8 3-ketoacyl-CoA thiolase compare
Psyr_3644 -0.8 -2.4 prephenate dehydrogenase compare
Psyr_2887 -0.8 -1.8 Endoribonuclease L-PSP compare
Psyr_1751 -0.8 -2.7 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0372 -0.8 -2.5 CDS compare
Psyr_4752 -0.8 -3.4 Insulinase-like:Peptidase M16, C-terminal compare
Psyr_3667 -0.8 -2.3 conserved hypothetical protein compare
Psyr_0936 -0.8 -5.7 Glycosyl transferase, group 1 compare
Psyr_0982 -0.8 -2.4 conserved hypothetical protein compare
Psyr_2071 -0.8 -1.7 outer membrane lipoprotein OprI compare
Psyr_1419 -0.8 -2.2 preQ(0) biosynthesis protein QueC compare
Psyr_2347 -0.8 -2.2 hypothetical protein compare
Psyr_0826 -0.8 -4.1 glucose-6-phosphate isomerase compare
Psyr_2696 -0.8 -2.8 UDP-glucose 6-dehydrogenase compare
Psyr_1158 -0.8 -2.5 Gluconate transporter compare
Psyr_1667 -0.8 -3.2 Colicin V production protein compare
Psyr_2411 -0.8 -2.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_1268 -0.8 -3.3 extracellular solute-binding protein, family 3:SLT compare
Psyr_2590 -0.8 -2.1 Periplasmic binding protein compare
Psyr_0529 -0.8 -2.3 Glycosyl transferase, group 1 compare
Psyr_3842 -0.8 -3.5 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_0231 -0.8 -1.8 conserved hypothetical protein compare
Psyr_4015 -0.8 -1.4 conserved domain protein compare
Psyr_4093 -0.8 -3.0 glutamate N-acetyltransferase compare
Psyr_0914 -0.8 -5.3 Glycosyl transferase, group 1 compare
Psyr_0976 -0.8 -2.9 Malate:quinone-oxidoreductase compare
Psyr_3678 -0.8 -3.0 adenosylcobinamide-phosphate synthase compare
Psyr_4512 -0.8 -3.5 putative phage-related protein compare
Psyr_4618 -0.8 -1.8 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2562 -0.7 -1.6 hypothetical protein compare
Psyr_3665 -0.7 -2.0 conserved hypothetical protein compare
Psyr_0849 -0.7 -4.6 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_5065 -0.7 -4.1 ATP-dependent DNA helicase UvrD compare
Psyr_1614 -0.7 -0.9 lipid A biosynthesis acyltransferase compare
Psyr_1663 -0.7 -2.2 phosphoribosylanthranilate isomerase compare
Psyr_0916 -0.7 -4.9 GDP-mannose 4,6-dehydratase compare
Psyr_1910 -0.7 -2.6 VacJ-like lipoprotein compare
Psyr_4418 -0.7 -1.5 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_0535 -0.7 -1.9 toluene tolerance protein, putative compare
Psyr_3947 -0.7 -1.7 Methyltransferase, putative compare
Psyr_0170 -0.7 -1.8 heat shock protein Hsp15 compare
Psyr_4100 -0.7 -3.0 D-alanine--D-alanine ligase compare
Psyr_1017 -0.7 -0.8 type III effector HopJ1 compare
Psyr_2151 -0.7 -0.9 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_2973 -0.7 -1.4 Glyoxalase I compare
Psyr_1104 -0.7 -1.4 Heme oxygenase compare
Psyr_1748 -0.7 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0498 -0.7 -1.9 Protein of unknown function DUF1445 compare
Psyr_3637 -0.7 -5.3 Glycosyl transferase, family 4 compare
Psyr_4134 -0.7 -3.7 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4407 -0.7 -1.9 phosphoribosylamine--glycine ligase compare
Psyr_3450 -0.7 -2.0 Hpt compare
Psyr_0524 -0.7 -1.6 Lipopolysaccharide kinase compare
Psyr_2095 -0.7 -2.1 Conserved TM helix compare
Psyr_3677 -0.7 -1.4 Aminotransferase, class I and II compare
Psyr_3796 -0.7 -2.4 transcriptional regulator, LysR family compare
Psyr_3199 -0.7 -1.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1094 -0.7 -1.8 cold-shock DNA-binding protein family compare
Psyr_0920 -0.7 -5.6 Glycosyl transferase, group 1 compare
Psyr_0219 -0.7 -4.4 phosphomannomutase compare
Psyr_2256 -0.7 -1.6 ABC transporter compare
Psyr_3547 -0.7 -2.5 transcriptional regulator, TetR family compare
Psyr_1930 -0.7 -2.1 hypothetical protein compare
Psyr_0830 -0.7 -2.1 Poly(A) polymerase compare
Psyr_2280 -0.7 -1.7 Alkanesulfonate monooxygenase compare
Psyr_3014 -0.7 -1.9 protoporphyrin IX magnesium-chelatase compare
Psyr_0985 -0.7 -1.9 Protein of unknown function UPF0016 compare
Psyr_1892 -0.6 -2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_4350 -0.6 -0.8 Protein of unknown function DUF218 compare
Psyr_1688 -0.6 -1.2 Protein of unknown function DUF1315 compare
Psyr_2994 -0.6 -2.7 Glycoside hydrolase, family 77 compare
Psyr_0303 -0.6 -1.5 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_2456 -0.6 -1.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_3545 -0.6 -1.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_2344 -0.6 -2.3 CDS compare
Psyr_0885 -0.6 -1.2 conserved hypothetical protein compare
Psyr_1963 -0.6 -2.1 Cyclic peptide transporter compare
Psyr_2211 -0.6 -2.0 monooxygenase, NtaA/SnaA/SoxA family compare
Psyr_0966 -0.6 -2.8 Conserved hypothetical protein YfcH compare
Psyr_3739 -0.6 -1.6 conserved hypothetical protein compare
Psyr_2259 -0.6 -2.0 Beta-lactamase-like protein compare
Psyr_1615 -0.6 -2.0 Patatin compare
Psyr_3591 -0.6 -2.0 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3900 -0.6 -1.8 conserved hypothetical protein compare
Psyr_0176 -0.6 -1.7 conserved hypothetical protein compare
Psyr_3581 -0.6 -2.6 ribosomal large subunit pseudouridine synthase B compare
Psyr_2540 -0.6 -0.9 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3031 -0.6 -2.0 Thiolase compare
Psyr_0576 -0.6 -1.6 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4967 -0.6 -1.7 conserved hypothetical protein compare
Psyr_2265 -0.6 -2.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1418 -0.6 -1.6 Radical SAM compare
Psyr_0350 -0.6 -1.6 ABC transporter compare
Psyr_0312 -0.6 -2.1 hypothetical protein compare
Psyr_2589 -0.6 -3.1 IucA/IucC compare
Psyr_1037 -0.6 -1.4 ribosomal subunit interface protein, putative compare
Psyr_1864 -0.6 -1.9 spermidine synthase compare
Psyr_0202 -0.6 -3.8 transcriptional regulator, LysR family compare
Psyr_3833 -0.6 -2.5 Plasmid stabilization system compare
Psyr_0215 -0.6 -4.1 Exodeoxyribonuclease III xth compare
Psyr_4420 -0.6 -1.9 precorrin-6A reductase compare
Psyr_3889 -0.6 -1.2 conserved hypothetical protein compare
Psyr_2270 -0.6 -1.6 transferase hexapeptide repeat protein compare
Psyr_4697 -0.6 -1.7 Aminoglycoside phosphotransferase compare
Psyr_2733 -0.6 -1.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_2269 -0.6 -2.4 GTP cyclohydrolase I compare
Psyr_1236 -0.6 -1.2 transcriptional regulator, BadM/Rrf2 family compare
Psyr_0174 -0.6 -2.7 Sodium:dicarboxylate symporter compare
Psyr_0947 -0.6 -2.9 TPR repeat protein:TPR repeat protein compare
Psyr_1553 -0.6 -2.3 hypothetical protein compare
Psyr_1816 -0.6 -1.8 transcriptional regulator, GntR family compare
Psyr_2348 -0.6 -1.6 hypothetical protein compare
Psyr_2171 -0.6 -1.6 HpcH/HpaI aldolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Biochanin a diacetate across organisms