Experiment set9IT063 for Sinorhizobium meliloti 1021

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
SMc00494 -6.0 -2.3 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02569 -5.7 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
SMc01054 -5.5 -4.9 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00917 -5.2 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00236 -5.1 -5.5 Indole-3-glycerol phosphate synthase compare
SMc03979 -5.0 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
SMc02899 -5.0 -13.6 prephenate dehydratase compare
SMc02124 -4.7 -16.2 nitrite reductase compare
SMc02766 -4.6 -19.9 tryptophan synthase subunit beta compare
SMc02217 -4.5 -8.1 O-succinylhomoserine sulfhydrylase compare
SMc04001 -4.5 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00918 -4.5 -9.6 ATP phosphoribosyltransferase regulatory subunit compare
SMc00640 -4.4 -10.3 phosphoserine aminotransferase compare
SMc01494 -4.4 -11.3 phosphoserine phosphatase compare
SMc00711 -4.4 -5.2 cyclohexadienyl dehydrogenase compare
SMc04045 -4.3 -10.7 dihydroxy-acid dehydratase compare
SMc04405 -4.3 -11.6 3-isopropylmalate dehydrogenase compare
SMc04026 -4.3 -8.7 glutamate synthase compare
SMc02765 -4.2 -14.0 tryptophan synthase subunit alpha compare
SMc00090 -4.2 -11.2 sulfate adenylyltransferase compare
SMc01004 -4.2 -10.7 phosphoribosyl-AMP cyclohydrolase compare
SMc03981 -4.2 -5.3 phosphoglycerate kinase compare
SMc02717 -4.2 -16.9 2-isopropylmalate synthase compare
SMc03112 -4.1 -16.5 B12-dependent methionine synthase compare
SMc02725 -4.1 -12.6 anthranilate synthase compare
SMc04028 -4.1 -20.6 glutamate synthase compare
SMc00235 -4.1 -8.4 anthranilate phosphoribosyltransferase compare
SMc00091 -4.1 -13.4 sulfate adenylyltransferase compare
SMc01431 -4.0 -17.3 acetolactate synthase 3 catalytic subunit compare
SMc02123 -4.0 -5.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc00293 -4.0 -14.9 homoserine dehydrogenase compare
SMc00131 -3.9 -15.6 transcriptional regulator compare
SMc00495 -3.9 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc01843 -3.9 -10.6 5,10-methylenetetrahydrofolate reductase compare
SMc02767 -3.9 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc03795 -3.8 -2.0 isopropylmalate isomerase small subunit compare
SMc00982 -3.7 -6.6 dioxygenase compare
SMa1635 -3.6 -2.8 hypothetical protein compare
SMc01053 -3.6 -5.1 siroheme synthase compare
SMc00092 -3.6 -10.6 phosphoadenosine phosphosulfate reductase compare
SMc01801 -3.6 -3.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc00017 -3.5 -1.8 homoserine kinase compare
SMc02570 -3.5 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03823 -3.5 -13.9 isopropylmalate isomerase large subunit compare
SMc04088 -3.5 -11.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03797 -3.5 -11.5 homoserine O-succinyltransferase compare
SMc03777 -3.4 -8.8 gamma-glutamyl phosphate reductase compare
SMc01726 -3.4 -7.7 acetylglutamate kinase compare
SMc02707 -3.3 -4.9 hypothetical protein compare
SMc00614 -3.3 -9.4 phosphoribosylglycinamide formyltransferase compare
SMc00615 -3.3 -10.1 phosphoribosylaminoimidazole synthetase compare
SMc03895 -3.3 -16.3 pyruvate carboxylase compare
SMc02166 -3.3 -10.9 dihydroorotase compare
SMc03100 -3.2 -2.1 hypothetical protein compare
SMc00412 -3.2 -4.8 orotidine 5'-phosphate decarboxylase compare
SMc00488 -3.1 -16.7 phosphoribosylformylglycinamidine synthase II compare
SMc02640 -3.1 -5.1 UDP-glucuronic acid epimerase compare
SM_b21177 -3.1 -9.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc00993 -3.1 -9.8 phosphoribosylamine--glycine ligase compare
SMc00554 -3.0 -9.3 amidophosphoribosyltransferase compare
SMc00493 -3.0 -6.4 phosphoribosylformylglycinamidine synthase I compare
SMc01360 -2.9 -2.8 aspartate carbamoyltransferase catalytic subunit compare
SMc03163 -2.9 -12.6 Xylose isomerase (EC 5.3.1.5) (from data) conserved
SMc02245 -2.9 -6.5 dihydroorotate dehydrogenase 2 compare
SMc04005 -2.9 -8.3 pyruvate kinase compare
SMc02572 -2.9 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
SMc03069 -2.8 -2.9 6-phosphogluconolactonase compare
SMc04346 -2.8 -5.1 ketol-acid reductoisomerase compare
SMc03164 -2.8 -12.3 Xylulose kinase (EC 2.7.1.17) (from data) conserved
SMc02165 -2.7 -7.9 orotate phosphoribosyltransferase compare
SMc02307 -2.7 -8.3 histidinol dehydrogenase compare
SMc00981 -2.7 -6.3 ferredoxin protein compare
SMc02138 -2.7 -6.5 acetylornithine transaminase compare
SMc01770 -2.7 -2.3 serine hydroxymethyltransferase compare
SMc00914 -2.7 -2.5 oxidoreductase compare
SMc01430 -2.6 -5.4 acetolactate synthase 3 regulatory subunit compare
SMc01124 -2.5 -8.6 PII uridylyl-transferase compare
SMc02137 -2.4 -2.7 ornithine carbamoyltransferase compare
SMc01028 -2.4 -13.6 phosphopyruvate hydratase compare
SMc04002 -2.3 -4.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc03776 -2.3 -4.1 gamma-glutamyl kinase compare
SMc00641 -2.3 -4.1 D-3-phosphoglycerate dehydrogenase compare
SMc00294 -2.3 -10.2 aminotransferase compare
SMc00511 -2.2 -2.9 D-ribulose-5-phosphate 3-epimerase compare
SMc03070 -2.2 -6.1 glucose-6-phosphate 1-dehydrogenase compare
SM_b21176 -2.1 -5.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02755 -2.1 -5.5 S-adenosyl-L-homocysteine hydrolase compare
SMc03006 -2.1 -1.6 chemotaxis regulator protein compare
SMc01880 -2.1 -1.4 pantoate--beta-alanine ligase compare
SM_b21580 -2.0 -2.4 hypothetical protein compare
SMc03978 -2.0 -1.4 transketolase compare
SMc02838 -2.0 -7.7 phosphoglyceromutase compare
SMc00450 -2.0 -1.3 protoheme IX farnesyltransferase compare
SMc02812 -1.9 -2.1 hypothetical protein compare
SMc03165 -1.9 -5.0 Novel Xylose regulator from LacI family (from data) conserved
SM_b21174 -1.9 -4.4 phosphate uptake ABC transporter permease compare
SMc02574 -1.8 -3.9 imidazoleglycerol-phosphate dehydratase compare
SMc01361 -1.8 -2.8 dihydroorotase compare
SMc00012 -1.7 -1.5 cytochrome C oxidase assembly protein compare
SMc02753 -1.7 -0.9 PTS system transporter subunit IIA compare
SMc01842 -1.7 -1.9 methyltransferase transcription regulator protein compare
SMc02246 -1.7 -0.9 hypothetical protein compare
SMc01613 -1.7 -4.5 ribose-5-phosphate isomerase B compare
SMc01881 -1.7 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SM_b20903 -1.7 -8.5 sugar uptake ABC transporter permease compare
SMc01578 -1.7 -6.8 aspartate aminotransferase compare
SMc03068 -1.6 -8.1 phosphogluconate dehydratase compare
SM_b20902 -1.6 -9.3 sugar uptake ABC transporter substrate-binding protein precursor compare
SMc03153 -1.6 -4.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc01207 -1.6 -2.0 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SM_b21400 -1.6 -2.3 hypothetical protein compare
SM_b21175 -1.6 -4.5 phosphate uptake ABC transporter permease compare
SMa1095 -1.5 -1.1 hypothetical protein compare
SMc02107 -1.5 -1.5 hypothetical protein compare
SM_b20904 -1.5 -4.1 sugar uptake ABC transporter ATP-binding protein compare
SMc02280 -1.5 -1.9 hypothetical protein compare
SMc02850 -1.5 -1.6 DNA polymerase I compare
SMc02232 -1.5 -1.9 hypothetical protein compare
SMc01206 -1.4 -1.3 queuine tRNA-ribosyltransferase compare
SMc01440 -1.4 -5.1 hydrolase serine protease transmembrane protein compare
SMc02050 -1.4 -3.5 trigger factor compare
SM_b20320 -1.4 -1.8 TRAP-type large permease component compare
SMc03839 -1.4 -1.5 hypothetical protein compare
SMc02909 -1.3 -1.5 transglycosylase transmembrane protein compare
SMa1365 -1.3 -1.2 ATP-binding protein compare
SMc00876 -1.3 -2.8 ATP-binding MRP protein compare
SMc01845 -1.3 -1.6 transglycosylase transmembrane protein compare
SMc01441 -1.3 -2.9 membrane bound protease compare
SMc02544 -1.3 -1.0 hypothetical protein compare
SMc02983 -1.3 -5.7 ornithine, DAP, or arginine decarboxylase compare
SMc03763 -1.3 -0.8 cytosine-specific methyltransferase compare
SMc02495 -1.2 -1.1 translaldolase compare
SMc03850 -1.2 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc00053 -1.2 -0.6 monovalent cation/H+ antiporter subunit C compare
SMc02058 -1.2 -1.9 YAJC protein compare
SMc01007 -1.2 -1.5 hypothetical protein compare
SMc02641 -1.2 -1.6 UDP-glucose 6-dehydrogenase compare
SMc02435 -1.2 -1.1 methyltransferase compare
SMc00815 -1.2 -0.7 inosine 5'-monophosphate dehydrogenase compare
SMc03924 -1.1 -5.8 glycogen synthase compare
SMc00461 -1.1 -1.4 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc00295 -1.1 -1.0 hypothetical protein compare
SMc02227 -1.1 -3.9 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc00555 -1.1 -1.2 colicin V production transmembrane protein compare
SM_b21441 -1.1 -1.9 inosine-5'-monophosphate dehydrogenase compare
SMc02858 -1.0 -0.5 chaperone protein DnaJ compare
SMc00010 -1.0 -1.1 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc04220 -1.0 -1.4 transcriptional regulator compare
SM_b21569 -1.0 -1.8 transcriptional regulator compare
SMc00073 -1.0 -1.1 hypothetical protein compare
SMc04348 -1.0 -1.1 transcriptional regulator compare
SMc00405 -1.0 -4.8 hypothetical protein compare
SMc01220 -1.0 -2.0 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc04000 -0.9 -0.7 hypothetical protein compare
SMc01505 -0.9 -1.2 hypothetical protein compare
SMc01153 -0.9 -0.8 enoyl-CoA hydratase compare
SMc02102 -0.9 -1.9 hypothetical protein compare
SMc03028 -0.9 -1.7 flagellar basal body rod protein FlgC compare
SMc01579 -0.9 -1.1 hypothetical protein compare
SMc02713 -0.9 -1.3 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc03288 -0.9 -3.3 hypothetical protein compare
SMc04454 -0.9 -3.6 ABC transporter ATP-binding protein compare
SMa0144 -0.9 -0.7 hypothetical protein compare
SMc00355 -0.9 -1.6 hypothetical protein compare
SMc02844 -0.9 -1.4 transcriptional regulator compare
SMc03012 -0.8 -2.9 chemoreceptor glutamine deamidase CheD compare
SMc03836 -0.8 -1.1 acyl-CoA thioesterase i protein compare
SMc00566 -0.8 -1.9 hypothetical protein compare
SMc01145 -0.8 -2.2 hypothetical protein compare
SMc03229 -0.8 -1.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SM_b20882 -0.8 -1.5 hypothetical protein compare
SMc03746 -0.8 -1.3 hypothetical protein compare
SMa2215 -0.8 -2.0 GntR family transcriptional regulator compare
SMc03798 -0.8 -3.9 aldose 1-epimerase compare
SMc03996 -0.8 -2.2 thiamine-phosphate pyrophosphorylase compare
SMc04042 -0.8 -3.6 monophosphatase compare
SMa0543 -0.8 -1.0 hypothetical protein compare
SMc00492 -0.8 -0.5 hypothetical protein compare
SM_b20948 -0.8 -1.0 glucosyltransferase compare
SMc02576 -0.8 -1.1 acetyltransferase compare
SMc00009 -0.8 -2.8 cytochrome C oxidase subunit II protein compare
SMa0797 -0.8 -2.5 hypothetical protein compare
SMa1036 -0.8 -2.5 hypothetical protein compare
SM_b21130 -0.8 -3.6 sulfate ABC transporter ATP-binding protein compare
SMa1570 -0.8 -1.0 PilA2 pilus assembly protein compare
SMa0872 -0.8 -2.6 hypothetical protein compare
SMc01852 -0.8 -4.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc00352 -0.8 -1.1 acetyltransferase compare
SMc00800 -0.8 -1.1 hypothetical protein compare
SMc01187 -0.8 -1.0 rare lipoprotein A compare
SMc01341 -0.8 -1.2 hypothetical protein compare
SMc02266 -0.8 -1.2 hypothetical protein compare
SM_b21395 -0.8 -1.8 hypothetical protein compare
SMc01097 -0.7 -1.3 hypothetical protein compare
SMc01509 -0.7 -1.1 hypothetical protein compare
SMc01877 -0.7 -2.8 DNA repair protein compare
SM_b21225 -0.7 -1.9 inositol monophosphatase compare
SMc00882 -0.7 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
SMc00804 -0.7 -1.3 hypothetical protein compare
SMc02897 -0.7 -1.5 cytochrome C transmembrane protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Xylose in Sinorhizobium meliloti 1021

For carbon source D-Xylose across organisms