Experiment set9IT062 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Hydrastine (1R, 9S) 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.0 -4.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4340 -3.6 -12.7 phosphomethylpyrimidine kinase, putative compare
Psyr_0034 -3.5 -3.4 tryptophan synthase, beta chain compare
Psyr_4740 -3.1 -7.4 thiazole-phosphate synthase compare
Psyr_4683 -2.8 -7.1 dethiobiotin synthase compare
Psyr_1544 -2.7 -5.8 SirA-like protein compare
Psyr_4341 -2.7 -9.5 thiamine-phosphate diphosphorylase compare
Psyr_0475 -2.5 -4.4 Protein of unknown function YGGT compare
Psyr_0033 -2.5 -3.3 tryptophan synthase, alpha chain compare
Psyr_4687 -2.4 -10.8 biotin synthase compare
Psyr_5132 -2.4 -5.1 Glucose-inhibited division protein A subfamily compare
Psyr_4684 -2.3 -4.4 biotin synthesis protein BioC compare
Psyr_4686 -2.1 -7.9 8-amino-7-oxononanoate synthase compare
Psyr_4091 -2.1 -4.7 8-oxo-dGTPase compare
Psyr_1373 -2.0 -2.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0383 -2.0 -1.4 Twin-arginine translocation protein TatB compare
Psyr_2980 -2.0 -3.8 UDP-glucose pyrophosphorylase compare
Psyr_0454 -2.0 -6.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_3419 -2.0 -5.5 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_1613 -1.9 -4.9 septum site-determining protein MinC compare
Psyr_2143 -1.8 -2.1 delta1-piperideine 2-carboxylate reductase compare
Psyr_0835 -1.8 -6.8 transcriptional regulator, TraR/DksA family compare
Psyr_4203 -1.8 -3.7 SsrA-binding protein compare
Psyr_3202 -1.7 -2.0 NADH dehydrogenase subunit G compare
Psyr_0529 -1.7 -5.0 Glycosyl transferase, group 1 compare
Psyr_3208 -1.6 -2.6 NADH dehydrogenase subunit M compare
Psyr_4519 -1.6 -7.3 General substrate transporter:Major facilitator superfamily compare
Psyr_3644 -1.5 -4.4 prephenate dehydrogenase compare
Psyr_3193 -1.5 -2.8 Transcription factor jumonji, jmjC compare
Psyr_5135 -1.5 -0.8 Protein of unknown function DUF37 compare
Psyr_0037 -1.5 -1.8 Protein of unknown function DUF1458 compare
Psyr_0255 -1.5 -3.0 glutamate-cysteine ligase compare
Psyr_0487 -1.5 -2.8 glutathione synthase compare
Psyr_4465 -1.5 -1.9 conserved domain protein compare
Psyr_0918 -1.4 -9.7 ABC transporter compare
Psyr_0917 -1.4 -8.3 ABC-2 compare
Psyr_1419 -1.4 -3.9 preQ(0) biosynthesis protein QueC compare
Psyr_4362 -1.3 -2.3 Rare lipoprotein A compare
Psyr_3947 -1.3 -3.1 Methyltransferase, putative compare
Psyr_1688 -1.3 -2.2 Protein of unknown function DUF1315 compare
Psyr_3886 -1.3 -2.1 methionyl-tRNA synthetase compare
Psyr_0575 -1.3 -2.5 protease FtsH subunit HflC compare
Psyr_0574 -1.3 -4.6 protease FtsH subunit HflK compare
Psyr_2887 -1.3 -1.8 Endoribonuclease L-PSP compare
Psyr_3665 -1.3 -3.2 conserved hypothetical protein compare
Psyr_3377 -1.2 -2.6 transcriptional regulator, MarR family compare
Psyr_4115 -1.2 -3.0 phosphoheptose isomerase compare
Psyr_4194 -1.2 -3.3 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1667 -1.2 -4.7 Colicin V production protein compare
Psyr_4512 -1.2 -5.6 putative phage-related protein compare
Psyr_2897 -1.2 -4.7 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0199 -1.2 -3.6 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_3020 -1.2 -2.2 precorrin-4 C11-methyltransferase compare
Psyr_3289 -1.1 -2.9 3-ketoacyl-CoA thiolase compare
Psyr_3698 -1.1 -3.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_1227 -1.1 -2.5 Queuosine biosynthesis protein compare
Psyr_3601 -1.1 -1.3 conserved hypothetical protein compare
Psyr_1270 -1.1 -1.6 conserved hypothetical protein compare
Psyr_4991 -1.1 -2.2 hypothetical protein compare
Psyr_0936 -1.1 -7.7 Glycosyl transferase, group 1 compare
Psyr_0303 -1.1 -2.2 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_4580 -1.1 -2.3 anthranilate phosphoribosyltransferase compare
Psyr_2854 -1.1 -4.2 conserved hypothetical protein compare
Psyr_1984 -1.1 -2.5 3-isopropylmalate dehydratase, small subunit compare
Psyr_4893 -1.0 -1.4 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_3427 -1.0 -2.4 conserved hypothetical protein compare
Psyr_0885 -1.0 -1.9 conserved hypothetical protein compare
Psyr_0982 -1.0 -2.3 conserved hypothetical protein compare
Psyr_1663 -1.0 -2.8 phosphoribosylanthranilate isomerase compare
Psyr_0849 -1.0 -5.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_1097 -1.0 -1.0 glycine cleavage system H protein compare
Psyr_4566 -1.0 -6.0 Peptidase M23B compare
Psyr_2591 -1.0 -3.8 transport system permease protein compare
Psyr_1751 -1.0 -3.4 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0826 -1.0 -5.1 glucose-6-phosphate isomerase compare
Psyr_2990 -1.0 -2.0 conserved hypothetical protein compare
Psyr_1859 -1.0 -2.6 conserved hypothetical protein compare
Psyr_1410 -1.0 -3.2 Holliday junction DNA helicase RuvB compare
Psyr_5133 -1.0 -3.0 tRNA modification GTPase trmE compare
Psyr_2183 -1.0 -3.3 transcriptional regulator, GntR family compare
Psyr_4673 -1.0 -1.8 Coenzyme PQQ synthesis D compare
Psyr_4158 -0.9 -5.5 conserved hypothetical protein compare
Psyr_0014 -0.9 -0.9 lipid A biosynthesis acyltransferase compare
Psyr_2386 -0.9 -1.6 hypothetical protein compare
Psyr_1747 -0.9 -2.9 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1791 -0.9 -2.5 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_3627 -0.9 -2.3 OsmC-like protein compare
Psyr_2383 -0.9 -1.9 Protein of unknown function DUF72 compare
Psyr_0916 -0.9 -6.2 GDP-mannose 4,6-dehydratase compare
Psyr_2840 -0.9 -3.0 hypothetical protein compare
Psyr_1372 -0.9 -3.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_2202 -0.9 -1.3 ABC transporter compare
Psyr_1350 -0.9 -3.1 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_2733 -0.9 -1.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_0215 -0.9 -5.9 Exodeoxyribonuclease III xth compare
Psyr_3904 -0.9 -4.3 Major intrinsic protein compare
Psyr_2747 -0.9 -2.8 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
Psyr_1418 -0.9 -1.6 Radical SAM compare
Psyr_1371 -0.9 -4.1 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_3637 -0.9 -6.1 Glycosyl transferase, family 4 compare
Psyr_2809 -0.8 -2.7 hypothetical protein compare
Psyr_3842 -0.8 -4.0 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_1408 -0.8 -1.5 Holliday junction endonuclease RuvC compare
Psyr_2582 -0.8 -4.8 TonB-dependent siderophore receptor compare
Psyr_2641 -0.8 -1.9 hypothetical protein compare
Psyr_3282 -0.8 -3.3 transcriptional regulator, TetR family compare
Psyr_4138 -0.8 -2.8 Toluene tolerance compare
Psyr_5067 -0.8 -3.1 conserved hypothetical protein compare
Psyr_2262 -0.8 -1.1 Peptidase M20:Peptidase M20 compare
Psyr_4464 -0.8 -1.2 lipoprotein, putative compare
Psyr_0571 -0.8 -2.6 tRNA isopentenyltransferase compare
Psyr_1236 -0.8 -2.8 transcriptional regulator, BadM/Rrf2 family compare
Psyr_5065 -0.8 -4.6 ATP-dependent DNA helicase UvrD compare
Psyr_0320 -0.8 -2.6 Protein of unknown function UPF0149 compare
Psyr_3358 -0.8 -2.3 transmembrane pair compare
Psyr_3581 -0.8 -4.1 ribosomal large subunit pseudouridine synthase B compare
Psyr_0914 -0.8 -5.6 Glycosyl transferase, group 1 compare
Psyr_3967 -0.8 -2.5 membrane protein TctB, putative compare
Psyr_2804 -0.8 -1.8 hypothetical protein compare
Psyr_3162 -0.8 -2.2 Metalloprotease inhibitor/calysin compare
Psyr_2245 -0.8 -1.3 conserved domain protein compare
Psyr_4335 -0.8 -1.5 transcriptional regulator, AsnC family compare
Psyr_4141 -0.8 -2.7 ABC transporter compare
Psyr_2348 -0.8 -2.2 hypothetical protein compare
Psyr_4967 -0.8 -2.2 conserved hypothetical protein compare
Psyr_3450 -0.8 -2.8 Hpt compare
Psyr_0784 -0.8 -1.9 CheW-like protein compare
Psyr_1017 -0.7 -1.3 type III effector HopJ1 compare
Psyr_3701 -0.7 -1.4 thioredoxin, putative compare
Psyr_1123 -0.7 -2.3 conserved hypothetical protein compare
Psyr_3359 -0.7 -3.0 Phenazine biosynthesis PhzC/PhzF protein compare
Psyr_0377 -0.7 -4.2 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1094 -0.7 -2.8 cold-shock DNA-binding protein family compare
Psyr_4418 -0.7 -2.2 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_4622 -0.7 -2.9 Nucleotidyl transferase compare
Psyr_4009 -0.7 -3.3 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1268 -0.7 -2.8 extracellular solute-binding protein, family 3:SLT compare
Psyr_2668 -0.7 -2.4 Helix-turn-helix, Fis-type compare
Psyr_0219 -0.7 -4.6 phosphomannomutase compare
Psyr_1930 -0.7 -2.2 hypothetical protein compare
Psyr_2590 -0.7 -2.0 Periplasmic binding protein compare
Psyr_4213 -0.7 -2.3 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4285 -0.7 -1.5 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_4730 -0.7 -1.6 FecR protein compare
Psyr_0920 -0.7 -6.1 Glycosyl transferase, group 1 compare
Psyr_3342 -0.7 -1.3 conserved hypothetical protein compare
Psyr_0576 -0.7 -1.4 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1458 -0.7 -1.2 hypothetical protein compare
Psyr_2581 -0.7 -2.3 FecR protein compare
Psyr_3676 -0.7 -2.2 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_0060 -0.7 -2.2 Protein of unknown function DUF513 compare
Psyr_4100 -0.7 -2.6 D-alanine--D-alanine ligase compare
Psyr_0579 -0.7 -4.5 RNAse R compare
Psyr_2558 -0.7 -2.9 hypothetical protein compare
Psyr_4051 -0.7 -1.4 transcriptional regulator, ArsR family compare
Psyr_4582 -0.7 -0.9 hypothetical protein compare
Psyr_0041 -0.7 -1.8 Protein of unknown function DUF1161 compare
Psyr_2560 -0.7 -1.9 hypothetical protein compare
Psyr_2857 -0.7 -2.5 conserved hypothetical protein compare
Psyr_3674 -0.7 -2.0 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_2642 -0.7 -2.7 hypothetical protein compare
Psyr_3636 -0.7 -4.7 Polysaccharide biosynthesis protein CapD compare
Psyr_4089 -0.7 -2.8 PAS compare
Psyr_2592 -0.7 -1.9 transport system permease protein compare
Psyr_4144 -0.7 -1.3 Protein of unknown function DUF1239 compare
Psyr_4408 -0.7 -3.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0919 -0.7 -4.7 Chromosome segregation ATPase-like protein compare
Psyr_2833 -0.7 -1.9 CDS compare
Psyr_0259 -0.7 -2.0 Osmolarity sensor protein envZ compare
Psyr_1378 -0.7 -1.3 RecA protein compare
Psyr_1455 -0.7 -1.6 conserved hypothetical protein compare
Psyr_3199 -0.6 -1.3 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0372 -0.6 -2.1 CDS compare
Psyr_2488 -0.6 -1.3 hypothetical protein compare
Psyr_2256 -0.6 -1.6 ABC transporter compare
Psyr_2538 -0.6 -1.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4460 -0.6 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_1573 -0.6 -1.9 cyclic nucleotide-binding protein compare
Psyr_2088 -0.6 -1.4 2-methylaconitate cis-trans isomerase compare
Psyr_3288 -0.6 -1.5 conserved hypothetical protein compare
Psyr_0947 -0.6 -3.4 TPR repeat protein:TPR repeat protein compare
Psyr_0386 -0.6 -1.7 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0775 -0.6 -3.1 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
Psyr_1929 -0.6 -2.1 hypothetical protein compare
Psyr_2056 -0.6 -2.6 CHAD compare
Psyr_1530 -0.6 -1.6 hypothetical protein compare
Psyr_0393 -0.6 -2.3 Protein of unknown function DUF971 compare
Psyr_2265 -0.6 -2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2471 -0.6 -1.1 hydroxymethylglutaryl-CoA lyase compare
Psyr_3008 -0.6 -3.0 Undecaprenyl-diphosphatase compare
Psyr_3667 -0.6 -1.3 conserved hypothetical protein compare
Psyr_1645 -0.6 -1.8 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_3015 -0.6 -3.0 cobaltochelatase CobN subunit compare
Psyr_3677 -0.6 -1.6 Aminotransferase, class I and II compare
Psyr_0531 -0.6 -1.8 LmbE-like protein compare
Psyr_4275 -0.6 -2.9 DNA replication and repair protein RadA compare
Psyr_2610 -0.6 -2.8 Chlorinating enzyme compare
Psyr_3293 -0.6 -0.7 UspA compare
Psyr_3459 -0.6 -1.3 Helix-turn-helix, Fis-type compare
Psyr_1180 -0.6 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Hydrastine (1R, 9S) across organisms