Experiment set9IT062 for Sinorhizobium meliloti 1021

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
SMc01054 -5.5 -5.4 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc02569 -5.4 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
SMc03979 -5.2 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00640 -4.9 -10.5 phosphoserine aminotransferase compare
SMc02766 -4.8 -18.3 tryptophan synthase subunit beta compare
SMc00711 -4.8 -5.5 cyclohexadienyl dehydrogenase compare
SMc03776 -4.7 -4.6 gamma-glutamyl kinase compare
SMc01801 -4.6 -4.0 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02707 -4.6 -5.7 hypothetical protein compare
SMc01843 -4.5 -14.9 5,10-methylenetetrahydrofolate reductase compare
SMc03112 -4.5 -18.2 B12-dependent methionine synthase compare
SMc00235 -4.4 -9.9 anthranilate phosphoribosyltransferase compare
SMc00092 -4.4 -12.1 phosphoadenosine phosphosulfate reductase compare
SMc02899 -4.4 -11.4 prephenate dehydratase compare
SMc02767 -4.3 -13.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02572 -4.3 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc01494 -4.3 -9.9 phosphoserine phosphatase compare
SMa1635 -4.2 -2.8 hypothetical protein compare
SMc02124 -4.2 -13.4 nitrite reductase compare
SMc04088 -4.2 -11.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00236 -4.2 -6.7 Indole-3-glycerol phosphate synthase compare
SMc02765 -4.1 -12.8 tryptophan synthase subunit alpha compare
SMc03797 -4.1 -11.2 homoserine O-succinyltransferase compare
SMc00917 -4.1 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc01004 -4.1 -12.5 phosphoribosyl-AMP cyclohydrolase compare
SMc00091 -4.1 -13.9 sulfate adenylyltransferase compare
SMc01726 -4.1 -8.0 acetylglutamate kinase compare
SMc02123 -4.0 -5.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01431 -4.0 -15.7 acetolactate synthase 3 catalytic subunit compare
SMc04405 -3.9 -10.9 3-isopropylmalate dehydrogenase compare
SMc03823 -3.9 -11.9 isopropylmalate isomerase large subunit compare
SMc04028 -3.8 -21.5 glutamate synthase compare
SMc02725 -3.8 -15.2 anthranilate synthase compare
SMc04045 -3.7 -10.6 dihydroxy-acid dehydratase compare
SMc00615 -3.6 -12.6 phosphoribosylaminoimidazole synthetase compare
SMc00614 -3.6 -8.1 phosphoribosylglycinamide formyltransferase compare
SMc01881 -3.6 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc04026 -3.6 -6.5 glutamate synthase compare
SMc03895 -3.6 -17.3 pyruvate carboxylase compare
SMc03777 -3.6 -8.5 gamma-glutamyl phosphate reductase compare
SMc00494 -3.5 -2.7 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00090 -3.5 -11.0 sulfate adenylyltransferase compare
SMc00495 -3.5 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02717 -3.5 -13.8 2-isopropylmalate synthase compare
SMc00293 -3.4 -14.8 homoserine dehydrogenase compare
SM_b21176 -3.4 -6.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02570 -3.4 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00918 -3.4 -10.8 ATP phosphoribosyltransferase regulatory subunit compare
SMc02245 -3.3 -7.7 dihydroorotate dehydrogenase 2 compare
SMc00131 -3.3 -12.7 transcriptional regulator compare
SMc04002 -3.3 -8.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00554 -3.2 -10.4 amidophosphoribosyltransferase compare
SMc01206 -3.2 -1.6 queuine tRNA-ribosyltransferase compare
SMc00488 -3.2 -16.3 phosphoribosylformylglycinamidine synthase II compare
SMc01053 -3.1 -5.5 siroheme synthase compare
SMc00993 -3.0 -10.5 phosphoribosylamine--glycine ligase compare
SMc03981 -3.0 -6.3 phosphoglycerate kinase compare
SMc00017 -3.0 -2.2 homoserine kinase compare
SMc02055 -3.0 -2.8 phytoene synthase compare
SMc02137 -2.9 -4.7 ornithine carbamoyltransferase compare
SMc04346 -2.9 -5.7 ketol-acid reductoisomerase compare
SMc02165 -2.8 -7.9 orotate phosphoribosyltransferase compare
SMc00982 -2.8 -6.5 dioxygenase compare
SMc02755 -2.8 -6.8 S-adenosyl-L-homocysteine hydrolase compare
SMc03070 -2.8 -7.2 glucose-6-phosphate 1-dehydrogenase compare
SMc04005 -2.8 -9.1 pyruvate kinase compare
SMc01360 -2.8 -3.1 aspartate carbamoyltransferase catalytic subunit compare
SMc01124 -2.7 -10.4 PII uridylyl-transferase compare
SMc01207 -2.7 -2.6 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02166 -2.7 -11.4 dihydroorotase compare
SMc03164 -2.7 -11.5 Xylulose kinase (EC 2.7.1.17) (from data) conserved
SMc02641 -2.6 -2.4 UDP-glucose 6-dehydrogenase compare
SMc03163 -2.6 -10.8 Xylose isomerase (EC 5.3.1.5) (from data) conserved
SMc02217 -2.6 -7.0 O-succinylhomoserine sulfhydrylase compare
SMc00412 -2.6 -5.6 orotidine 5'-phosphate decarboxylase compare
SMc01770 -2.5 -2.5 serine hydroxymethyltransferase compare
SMc00493 -2.5 -6.5 phosphoribosylformylglycinamidine synthase I compare
SMc01028 -2.5 -12.3 phosphopyruvate hydratase compare
SMc00294 -2.4 -10.4 aminotransferase compare
SMc03165 -2.4 -5.3 Novel Xylose regulator from LacI family (from data) conserved
SMc02640 -2.3 -4.1 UDP-glucuronic acid epimerase compare
SMc02138 -2.3 -4.5 acetylornithine transaminase compare
SMc03795 -2.2 -2.3 isopropylmalate isomerase small subunit compare
SMc00981 -2.2 -7.5 ferredoxin protein compare
SMc01880 -2.2 -1.5 pantoate--beta-alanine ligase compare
SM_b21175 -2.2 -4.2 phosphate uptake ABC transporter permease compare
SMc00641 -2.1 -4.1 D-3-phosphoglycerate dehydrogenase compare
SMc03978 -2.1 -1.4 transketolase compare
SMc00876 -2.1 -3.6 ATP-binding MRP protein compare
SMc02838 -2.1 -8.5 phosphoglyceromutase compare
SMc03229 -2.0 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SM_b21177 -2.0 -5.7 phosphate uptake ABC transporter ATP-binding protein compare
SM_b21174 -2.0 -4.2 phosphate uptake ABC transporter permease compare
SMc02714 -1.9 -1.9 hypothetical protein compare
SMc01845 -1.9 -1.8 transglycosylase transmembrane protein compare
SM_b20902 -1.9 -11.6 sugar uptake ABC transporter substrate-binding protein precursor compare
SMc02574 -1.9 -4.4 imidazoleglycerol-phosphate dehydratase compare
SMc01183 -1.9 -0.9 LexA repressor compare
SMc00511 -1.9 -3.8 D-ribulose-5-phosphate 3-epimerase compare
SMc02307 -1.9 -7.8 histidinol dehydrogenase compare
SMc03068 -1.8 -8.4 phosphogluconate dehydratase compare
SMc02683 -1.7 -2.2 hypothetical protein compare
SMc01578 -1.7 -8.7 aspartate aminotransferase compare
SMc03053 -1.7 -1.9 flagellar biosynthesis protein FliQ compare
SMc04001 -1.7 -1.4 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01579 -1.7 -1.8 hypothetical protein compare
SMc01220 -1.7 -4.0 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc01430 -1.7 -6.6 acetolactate synthase 3 regulatory subunit compare
SMc00295 -1.6 -1.4 hypothetical protein compare
SMc01361 -1.6 -2.9 dihydroorotase compare
SM_b20903 -1.6 -6.6 sugar uptake ABC transporter permease compare
SM_b20904 -1.6 -3.2 sugar uptake ABC transporter ATP-binding protein compare
SMc00450 -1.5 -1.4 protoheme IX farnesyltransferase compare
SMc03924 -1.5 -6.8 glycogen synthase compare
SM_b20320 -1.4 -2.0 TRAP-type large permease component compare
SMc02867 -1.4 -2.1 multidrug-efflux system transmembrane protein compare
SMc02145 -1.3 -0.7 signal peptide protein compare
SMc03153 -1.3 -2.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc00987 -1.3 -2.0 hypothetical protein compare
SMc02435 -1.3 -1.2 methyltransferase compare
SMc00067 -1.2 -5.9 outer-membranne lipoprotein compare
SMc01119 -1.2 -2.1 hypothetical protein compare
SMc02858 -1.2 -0.6 chaperone protein DnaJ compare
SMc04348 -1.2 -1.4 transcriptional regulator compare
SMc01441 -1.2 -4.9 membrane bound protease compare
SMc00815 -1.2 -0.7 inosine 5'-monophosphate dehydrogenase compare
SMc03069 -1.2 -1.2 6-phosphogluconolactonase compare
SMc03974 -1.2 -4.7 hypothetical protein compare
SMc04000 -1.2 -1.0 hypothetical protein compare
SMc02983 -1.2 -5.8 ornithine, DAP, or arginine decarboxylase compare
SMc03839 -1.2 -1.7 hypothetical protein compare
SMc04391 -1.1 -1.3 3-ketoacyl-ACP reductase compare
SMc01440 -1.1 -4.7 hydrolase serine protease transmembrane protein compare
SMa1095 -1.1 -0.9 hypothetical protein compare
SMc02844 -1.1 -1.6 transcriptional regulator compare
SMc03763 -1.1 -1.0 cytosine-specific methyltransferase compare
SMc04454 -1.1 -3.5 ABC transporter ATP-binding protein compare
SM_b21173 -1.0 -1.2 hypothetical protein compare
SMa2215 -1.0 -2.7 GntR family transcriptional regulator compare
SMc02234 -1.0 -1.5 hypothetical protein compare
SMc00760 -1.0 -1.5 recombinase A compare
SMc02495 -1.0 -1.0 translaldolase compare
SMc00355 -1.0 -2.2 hypothetical protein compare
SMc03028 -1.0 -2.2 flagellar basal body rod protein FlgC compare
SMc00405 -1.0 -4.3 hypothetical protein compare
SMc01613 -1.0 -3.3 ribose-5-phosphate isomerase B compare
SMc02260 -1.0 -1.6 ABC transporter ATP-binding protein compare
SMc02052 -1.0 -0.9 hypothetical protein compare
SMc02778 -1.0 -1.0 hydroxyacid aldolase compare
SMc02048 -1.0 -2.2 glycine cleavage system protein H compare
SMc02058 -0.9 -1.7 YAJC protein compare
SMc01024 -0.9 -1.1 preprotein translocase subunit SecG compare
SM_b20563 -0.9 -1.5 hypothetical protein compare
SMc00712 -0.9 -1.2 hypothetical protein compare
SMc00191 -0.9 -1.5 hypothetical protein compare
SMa0050 -0.9 -1.4 hypothetical protein compare
SMc02719 -0.9 -0.9 transposase compare
SMc04224 -0.9 -1.2 hypothetical protein compare
SM_b20746 -0.9 -1.0 hypothetical protein compare
SM_b20217 -0.9 -2.7 hypothetical protein compare
SMc00353 -0.9 -1.4 transmembrane protein compare
SMc02850 -0.8 -1.2 DNA polymerase I compare
SMc00914 -0.8 -1.6 oxidoreductase compare
SMc01724 -0.8 -1.4 hypothetical protein compare
SMc02050 -0.8 -2.6 trigger factor compare
SMc02631 -0.8 -1.2 hypothetical protein compare
SMa1017 -0.8 -1.7 hypothetical protein compare
SMc03038 -0.8 -1.9 flagellin B protein compare
SMc02812 -0.8 -1.7 hypothetical protein compare
SMc01260 -0.8 -2.8 transcriptional regulator compare
SMc01701 -0.8 -1.5 hypothetical protein compare
SM_b20105 -0.8 -1.1 transcriptional regulator compare
SMc02713 -0.8 -1.1 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc01043 -0.8 -4.1 nitrogen assimilation regulatory protein compare
SMa5023 -0.8 -2.5 hypothetical protein compare
SMc01850 -0.7 -1.2 hypothetical protein compare
SMc00143 -0.7 -1.2 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SM_b20307 -0.7 -0.8 dihydroxyacetone kinase compare
SMc02980 -0.7 -1.0 hypothetical protein compare
SMc02229 -0.7 -4.3 acyl-CoA dehydrogenase compare
SM_b21467 -0.7 -2.6 hypothetical protein compare
SMc04092 -0.7 -1.6 hypothetical protein compare
SM_b21580 -0.7 -1.3 hypothetical protein compare
SMc04003 -0.7 -0.7 50S ribosomal protein L36 compare
SMa0674 -0.7 -1.2 hypothetical protein compare
SMc02484 -0.7 -2.3 amino acid efflux transmembrane protein compare
SM_b21133 -0.7 -4.0 sulfate ABC transporter substrate-binding protein compare
SMc02695 -0.7 -2.8 GTP-dependent nucleic acid-binding protein EngD compare
SMc03826 -0.7 -0.5 argininosuccinate synthase compare
SMc02246 -0.7 -0.5 hypothetical protein compare
SMc00189 -0.7 -2.8 cytochrome C1 protein compare
SM_b20602 -0.7 -2.1 branched-chain amino acid ABC transporter ATP-binding protein compare
SM_b20509 -0.7 -1.9 transcriptional regulator compare
SMc00461 -0.7 -0.9 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMa1323 -0.7 -1.3 Transcription regulator compare
SM_b21347 -0.7 -1.3 pectin degradation protein compare
SMc02407 -0.7 -2.5 hypothetical protein compare
SMc04042 -0.7 -2.6 monophosphatase compare
SMc02373 -0.7 -0.9 hypothetical protein compare
SMa2195 -0.7 -1.8 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Xylose in Sinorhizobium meliloti 1021

For carbon source D-Xylose across organisms