Experiment set9IT060 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Pyruvate (fermenting) with Na2S as sulfur source with Casamino acids 0.2%

200 most detrimental genes:

  gene name fitness t score description  
DVU2510 +1.6 1.2 penicillin-binding protein (TIGR) compare
DVU0316 flgB +1.5 4.7 flagellar basal-body rod protein FlgB (TIGR) compare
DVU0043 fliQ +1.5 10.7 flagellar biosynthetic protein FliQ (TIGR) compare
DVU0311 +1.4 10.2 flagellar assembly protein FliH, putative (TIGR) compare
DVU0314 fliE +1.4 9.9 flagellar basal body component FliE (TIGR) compare
DVU2045 +1.4 6.6 hypothetical protein (TIGR) compare
DVU0044 fliP +1.4 7.9 flagellar biosynthetic protein fliP (TIGR) compare
DVU0045 +1.3 6.7 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU2894 flrA +1.3 7.7 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0310 fliI +1.3 8.8 flagellum-specific ATP synthase FliI (TIGR) compare
DVU1040 hisB +1.2 1.5 imidazoleglycerol-phosphate dehydratase (TIGR) compare
DVU0312 fliG +1.2 6.9 flagellar motor switch protein FliG (TIGR) compare
DVU0315 flgC +1.2 9.3 flagellar basal-body rod protein FlgC (TIGR) compare
DVU3234 +1.2 4.0 flagellar biosynthetic protein FliR (TIGR) compare
DVU3232 flhA +1.2 8.9 flagellar biosynthetic protein FlhA (TIGR) compare
DVU1363 rfbD +1.2 7.1 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU3233 flhB +1.2 8.7 flagellar biosynthetic protein FlhB (TIGR) compare
DVU0046 fliN +1.2 7.6 flagellar motor switch protein FliN (TIGR) compare
DVU0698 rfbC +1.2 9.4 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU0514 +1.1 7.4 FlgA family protein (TIGR) compare
DVU0516 flgI +1.1 8.6 flagellar P-ring protein FlgI (TIGR) compare
DVU0512 flgF +1.1 7.5 flagellar basal-body rod protein, putative (TIGR) compare
DVU0519 +1.1 9.5 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU2867 +1.1 1.5 holin (TIGR) compare
DVU0513 flgG +1.1 9.5 flagellar basal-body rod protein FlgG (TIGR) compare
DVU0410 +1.1 6.4 hypothetical protein (TIGR) compare
DVU0307 +1.1 6.9 flagella basal body rod domain protein (TIGR) compare
DVU0313 fliF +1.1 7.1 flagellar M-ring protein FliF (TIGR) compare
DVU1251 +1.1 1.5 hypothetical protein (TIGR) compare
DVU1063 flrC +1.1 5.8 transcriptional regulatory protein (TIGR) compare
DVU2896 +1.1 8.3 TPR domain protein (TIGR) compare
DVU2609 +1.1 5.3 chemotaxis MotB protein, putative (TIGR) compare
DVU1862 +1.0 5.0 GGDEF domain protein (TIGR) compare
DVU2903 pcnB2 +1.0 6.7 HD domain protein (TIGR) compare
DVU0793 +1.0 2.4 hypothetical protein (TIGR) compare
DVU1726 +1.0 1.7 hypothetical protein (TIGR) compare
DVU1465 +1.0 6.6 CgeB family protein (TIGR) compare
DVU0295 +1.0 7.9 amine oxidase, flavin-containing (TIGR) compare
DVU0522 yviF +0.9 5.6 conserved hypothetical protein (TIGR) compare
DVU0515 flgH +0.9 4.5 flagellar L-ring protein FlgH (TIGR) compare
DVU2608 motA-3 +0.9 6.2 chemotaxis protein MotA (TIGR) compare
DVU1443 flgE +0.9 5.1 flagellar hook protein FlgE (TIGR) compare
DVU0318 +0.9 2.8 TPR domain protein (TIGR) compare
DVU3229 fliA +0.9 4.2 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DORF12455 +0.9 1.1 SEED: helix-turn-helix protein, CopG family compare
DVU2444 flaB3 +0.9 4.3 flagellin (TIGR) compare
DVU1039 +0.9 2.7 lipoprotein, putative (TIGR) compare
DVU0910 fliM +0.9 4.6 flagellar motor switch protein FliM (TIGR) compare
DVU0863 +0.9 7.2 flagellar hook-associated protein 2, putative (TIGR) compare
DVU2566 lysA-2 +0.9 2.1 diaminopimelate decarboxylase (TIGR) compare
DVU1444 flgD +0.9 5.3 basal-body rod modification protein FlgD (TIGR) compare
DVU0409 +0.9 1.7 hypothetical protein (TIGR) compare
DVU0047 +0.9 4.2 flagellar protein FliL (TIGR) compare
DVU1445 +0.8 6.8 flagellar hook-length control domain protein (TIGR) compare
DVU0135 +0.8 4.1 conserved hypothetical protein (TIGR) compare
DVU0518 +0.8 3.3 hypothetical protein (TIGR) compare
DVU0136 +0.8 3.0 hypothetical protein (TIGR) compare
DVU0913 +0.8 3.0 conserved hypothetical protein (TIGR) compare
DVU1449 +0.8 5.4 anti-anti-sigma factor, putative (TIGR) compare
DVU0520 +0.8 5.4 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU2112 +0.8 3.7 hypothetical protein (TIGR) compare
DVU3287 +0.8 5.7 glycosyl transferase, group 2 family protein (TIGR) compare
DVU3387 +0.8 4.8 hypothetical protein (TIGR) compare
DVU0432 +0.8 1.7 Ech hydrogenase, subunit EchC, putative (TIGR) compare
DVU2606 +0.8 2.5 hypothetical protein (TIGR) compare
DVU1944 oorD +0.8 1.2 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU0858 +0.7 4.6 lipoprotein, putative (TIGR) compare
DVU1828 gidA +0.7 2.4 glucose inhibited division protein A (TIGR) compare
DVU2873 +0.7 0.8 hypothetical protein (TIGR) compare
DVU2513 mraZ +0.7 1.7 conserved hypothetical protein TIGR00242 (TIGR) compare
DVU0862 +0.7 4.1 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU3227 +0.7 3.2 flagellar basal body-associated protein, putative (TIGR) compare
DVU2865 +0.7 0.7 lipoprotein, putative (TIGR) compare
DVU1210 +0.7 0.4 conserved hypothetical protein (TIGR) compare
DVU1446 +0.7 5.2 heptosyltransferase family protein (TIGR) compare
DVU1038 hisA +0.7 1.3 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR) compare
DVU1429 +0.7 0.7 GTP-binding protein (TIGR) compare
DVU0897 +0.7 3.6 RNA modification enzyme, MiaB-family (TIGR) compare
DVU2847 +0.7 2.7 hypothetical protein (TIGR) compare
DVU1464 +0.7 5.3 heptosyltransferase family protein (TIGR) compare
DVU2203 +0.7 1.4 endoribonuclease, L-PSP family (TIGR) compare
DVU0669 +0.7 1.7 hypothetical protein (TIGR) compare
DVU0912 +0.7 1.5 conserved domain protein (TIGR) compare
DVU3289 +0.7 2.3 hypothetical protein (TIGR) compare
DVU2473 +0.7 0.5 hypothetical protein (TIGR) compare
DVU0301 +0.7 0.7 hypothetical protein (TIGR) compare
DVU2046 +0.7 0.7 hypothetical protein (TIGR) compare
DVU2669 +0.7 1.6 conserved domain protein (TIGR) compare
DVU2578 +0.6 3.4 response regulator (TIGR) compare
DORF8192 +0.6 1.0 SEED: FIG00606834: hypothetical protein compare
DORF13021 +0.6 0.7 no description compare
DVU0989 +0.6 1.9 periplasmic divalent cation tolerance protein cutA, putative (TIGR) compare
DVU1875 +0.6 1.0 dafA protein (TIGR) compare
DVU1863 +0.6 2.2 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU3177 +0.6 3.7 hypothetical protein (TIGR) compare
DVU0703 lepA +0.6 0.9 GTP-binding protein LepA (TIGR) compare
DVU2063 +0.6 1.5 conserved hypothetical protein (TIGR) compare
DVU3329 +0.6 1.1 hypothetical protein (TIGR) compare
DVU2956 flrA +0.6 1.3 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU1447 +0.6 3.2 CgeB family protein (TIGR) compare
DVU2251 +0.6 1.5 DNA-binding protein (TIGR) compare
DVU3225 +0.6 1.9 hypothetical protein (TIGR) compare
DVU2404 hdrC +0.6 2.4 heterodisulfide reductase, C subunit (TIGR) compare
DVU0880 +0.6 2.4 hypothetical protein (TIGR) compare
DVU1632 +0.5 1.9 PTS system, IIA component (TIGR) compare
DVU0842 +0.5 1.5 hypothetical protein (TIGR) compare
DVU1441 flaB1 +0.5 3.1 flagellin (TIGR) compare
DVU2774 +0.5 1.5 CBS domain protein/ACT domain protein (TIGR) compare
DVU2211 +0.5 3.9 hypothetical protein (TIGR) compare
DVU0796 hisD +0.5 1.1 histidinol dehydrogenase (TIGR) compare
DVU1609 dapB +0.5 1.7 dihydrodipicolinate reductase (TIGR) compare
DVU1222 +0.5 1.7 hypothetical protein (TIGR) compare
DVU2454 +0.5 0.3 hypothetical protein (TIGR) compare
DVU1838 trxB-2 +0.5 1.2 thioredoxin reductase (TIGR) compare
DVU1174 +0.5 1.0 hypothetical protein (TIGR) compare
DVU3260 +0.5 1.4 hypothetical protein (TIGR) compare
DVU1630 ptsN +0.5 0.5 PTS system, IIA component (TIGR) compare
DVU2362 thiE-2 +0.5 1.5 thiamine-phosphate pyrophosphorylase (TIGR) compare
DVUA0118 +0.5 2.0 type III secretion protein, YopL family (TIGR) compare
DVU3149 sppA +0.5 2.4 signal peptide peptidase SppA, 36K type (TIGR) compare
DVU_tRNA-Arg-1 tRNA-Arg +0.5 0.7 tRNA with anticodon ACG for Arg (VIMSS-AUTO) compare
DVU1589 +0.5 2.8 hypothetical protein (TIGR) compare
DVU2236 +0.5 0.3 hypothetical protein (TIGR) compare
DVU2855 +0.5 1.2 tail/DNA circulation protein, putative (TIGR) compare
DVU2401 +0.5 2.7 hydrogenase, iron-sulfur cluster-binding subunit, putative (TIGR) compare
DVU1436 +0.5 0.4 hypothetical protein (TIGR) compare
DVU1275 +0.5 2.5 hypothetical protein (TIGR) compare
DVU2328 hypA +0.5 0.9 hydrogenase nickel insertion protein HypA, putative (TIGR) compare
DVU2750 cbiD +0.5 2.9 cobalamin biosynthesis protein CbiD (TIGR) compare
DORF26459 +0.5 1.1 no description compare
DVU2963 +0.5 2.0 response regulator (TIGR) compare
DVU1338 +0.5 2.9 conserved hypothetical protein (TIGR) compare
DVU0486 +0.5 1.3 hypothetical protein (TIGR) compare
DVU2097 +0.5 1.4 transcriptional regulator, putative (TIGR) compare
DVU1096 argF +0.5 2.8 ornithine carbamoyltransferase (TIGR) compare
DVU1133 +0.5 1.4 hypothetical protein (TIGR) compare
DVUA0144 +0.5 1.1 hypothetical protein (TIGR) compare
DVU0063 +0.5 0.8 transcriptional regulator, MarR family (TIGR) compare
DVU1126 +0.5 1.9 lipoprotein, putative (TIGR) compare
DORF43224 +0.5 1.2 no description compare
DVU0411 +0.5 3.1 heptosyltransferase family protein (TIGR) compare
DVU0951 moeA-2 +0.5 1.9 molybdopterin biosynthesis MoeA protein, putative (TIGR) compare
DVU0167 oppC +0.5 1.1 oligopeptide/dipeptide ABC transporter, permease protein (TIGR) compare
DVU1135 +0.4 1.3 conserved domain protein (TIGR) compare
DVU0690 +0.4 2.1 conserved hypothetical protein (TIGR) compare
DVU0970 +0.4 1.7 lipoprotein, putative (TIGR) compare
DVU0298 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0232 +0.4 0.5 hypothetical protein (TIGR) compare
DVU2890 +0.4 1.8 conserved domain protein (TIGR) compare
DVU2012 +0.4 0.4 hypothetical protein (TIGR) compare
DVU2577 +0.4 1.4 DNA-binding response regulator, LuxR family (TIGR) compare
DVU3032 +0.4 1.8 conserved hypothetical protein (TIGR) compare
DVU0399 +0.4 2.4 hypothetical protein (TIGR) compare
DVU1407 +0.4 1.3 radical SAM domain protein (TIGR) compare
DVU3109 +0.4 1.1 iron-sulfur cluster-binding protein (TIGR) compare
DVU1629 yfiA +0.4 2.6 ribosomal subunit interface protein (TIGR) compare
DVU0097 potB +0.4 1.1 polyamine ABC transporter, permease protein (TIGR) compare
DVU0359 +0.4 1.7 HesB-like domain (TIGR) compare
DVU1735 +0.4 1.3 hypothetical protein (TIGR) compare
DVU1517 +0.4 1.8 transcriptional regulator cII, putative (TIGR) compare
DVU0057 +0.4 2.2 transcriptional regulator, TetR family (TIGR) compare
DVU2350 gid +0.4 2.4 gid protein (TIGR) compare
DVU0829 ptsI +0.4 2.4 phosphoenolpyruvate-protein phosphotransferase (TIGR) compare
DVU1106 +0.4 1.3 hypothetical protein (TIGR) compare
DVU2259 +0.4 1.4 conserved hypothetical protein TIGR01033 (TIGR) compare
DVU2402 hdrA +0.4 2.3 heterodisulfide reductase, A subunit (TIGR) compare
DVU0764 hup-2 +0.4 1.2 DNA-binding protein HU (TIGR) compare
DVU2120 +0.4 0.9 hypothetical protein (TIGR) compare
DVU2115 +0.4 0.7 hypothetical protein (TIGR) compare
DVU2132 +0.4 1.7 hypothetical protein (TIGR) compare
DVU0048 +0.4 2.3 chemotaxis protein MotB (TIGR) compare
DVU2107 +0.4 1.7 hypothetical protein (TIGR) compare
DVU2657 +0.4 0.6 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR) compare
DVU3360 parB +0.4 2.2 ParB family protein (TIGR) compare
DVU0715 livG +0.4 1.3 branched-chain amino acid ABC transporter, ATP binding protein (TIGR) compare
DVU1727 +0.4 0.9 hypothetical protein (TIGR) compare
DVU2993 +0.4 3.1 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU3299 +0.4 1.0 membrane protein, putative (TIGR) compare
DVU1520 +0.4 0.3 hypothetical protein (TIGR) compare
DVU2947 +0.4 1.1 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU2766 +0.4 1.3 hypothetical protein (TIGR) compare
DORF20226 +0.4 1.2 no description compare
DVU2399 +0.4 2.1 hydrogenase, putative (TIGR) compare
DVU0304 +0.4 1.7 hypothetical protein (TIGR) compare
DVU1033 cinA +0.4 0.3 competence/damage-inducible protein CinA protein, truncation (TIGR) compare
DVU0754 +0.4 0.7 hypothetical protein (TIGR) compare
DVU2871 +0.4 1.3 minor capsid protein C (TIGR) compare
DVU3318 +0.4 1.6 hypothetical protein (TIGR) compare
DVU3067 hypF +0.4 0.6 [NiFe] hydrogenase maturation protein HypF (TIGR) compare
DVU1337 lon +0.4 2.4 ATP-dependent protease La (TIGR) compare
DORF26313 +0.4 1.0 no description compare
DVU2677 +0.4 2.6 sensor histidine kinase/response regulator (TIGR) compare
DVU2712 +0.4 0.7 hypothetical protein (TIGR) compare
DORF15229 +0.3 2.2 no description compare
DVU1023 +0.3 1.4 rhomboid family protein (TIGR) compare
DVU3085 +0.3 0.7 hypothetical protein (TIGR) compare
DVU0223 +0.3 0.5 conserved hypothetical protein (TIGR) compare
DVU0257 +0.3 0.6 acetyltransferase, GNAT family (TIGR) compare
DVU1799 fusA-2 +0.3 2.1 translation elongation factor G (TIGR) compare
DVU2829 +0.3 1.1 hypothetical protein (TIGR) compare


Specific Phenotypes

For 1 genes in this experiment

For fermentative growth Sodium pyruvate in Desulfovibrio vulgaris Hildenborough JW710

For fermentative growth Sodium pyruvate across organisms