Experiment set9IT059 for Sinorhizobium meliloti 1021

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
SMc02766 -7.5 -14.5 tryptophan synthase subunit beta compare
SMc02838 -7.2 -7.0 phosphoglyceromutase compare
SMc01494 -7.0 -10.7 phosphoserine phosphatase compare
SMc02572 -6.9 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
SMc04405 -6.9 -6.7 3-isopropylmalate dehydrogenase compare
SMc00917 -6.8 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02569 -6.8 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
SMc02123 -6.7 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01843 -6.5 -10.9 5,10-methylenetetrahydrofolate reductase compare
SMc00993 -6.3 -7.5 phosphoribosylamine--glycine ligase compare
SMc00615 -6.3 -13.5 phosphoribosylaminoimidazole synthetase compare
SMc00711 -6.3 -4.3 cyclohexadienyl dehydrogenase compare
SMa1635 -6.2 -2.5 hypothetical protein compare
SMc02899 -6.2 -11.1 prephenate dehydratase compare
SMc00235 -6.2 -7.3 anthranilate phosphoribosyltransferase compare
SMc00640 -6.1 -6.0 phosphoserine aminotransferase compare
SMc01054 -6.1 -5.8 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00494 -5.9 -2.4 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc04045 -5.9 -9.0 dihydroxy-acid dehydratase compare
SMc03776 -5.9 -4.1 gamma-glutamyl kinase compare
SMc01004 -5.9 -9.8 phosphoribosyl-AMP cyclohydrolase compare
SMc03797 -5.8 -11.1 homoserine O-succinyltransferase compare
SMc01431 -5.8 -11.7 acetolactate synthase 3 catalytic subunit compare
SMc00918 -5.7 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
SMc04002 -5.7 -9.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02765 -5.7 -12.3 tryptophan synthase subunit alpha compare
SMc02717 -5.6 -13.5 2-isopropylmalate synthase compare
SMc04028 -5.5 -15.5 glutamate synthase compare
SMc02725 -5.5 -12.3 anthranilate synthase compare
SMc00092 -5.5 -11.7 phosphoadenosine phosphosulfate reductase compare
SMc01028 -5.5 -14.2 phosphopyruvate hydratase compare
SMc03823 -5.4 -12.1 isopropylmalate isomerase large subunit compare
SMc00493 -5.4 -7.3 phosphoribosylformylglycinamidine synthase I compare
SMc02574 -5.3 -6.3 imidazoleglycerol-phosphate dehydratase compare
SMc03112 -5.3 -17.7 B12-dependent methionine synthase compare
SMc00495 -5.3 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00131 -5.2 -16.4 transcriptional regulator compare
SMc02124 -5.2 -13.9 nitrite reductase compare
SMc02138 -5.2 -8.3 acetylornithine transaminase compare
SMc03981 -5.2 -5.2 phosphoglycerate kinase compare
SMc02767 -5.1 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00236 -5.1 -6.8 Indole-3-glycerol phosphate synthase compare
SMc02217 -5.1 -6.9 O-succinylhomoserine sulfhydrylase compare
SMc00091 -5.0 -10.2 sulfate adenylyltransferase compare
SMc00488 -5.0 -19.8 phosphoribosylformylglycinamidine synthase II compare
SMc00412 -4.8 -3.3 orotidine 5'-phosphate decarboxylase compare
SM_b20611 -4.8 -15.7 C4-dicarboxylate transporter DctA conserved
SMc04026 -4.8 -7.3 glutamate synthase compare
SMc04088 -4.7 -8.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02562 -4.7 -7.9 phosphoenolpyruvate carboxykinase compare
SMc00293 -4.6 -12.9 homoserine dehydrogenase compare
SMc01139 -4.5 -7.6 RNA polymerase factor sigma-54 compare
SMc04001 -4.5 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00554 -4.5 -9.0 amidophosphoribosyltransferase compare
SMc02245 -4.4 -5.4 dihydroorotate dehydrogenase 2 compare
SMc02570 -4.4 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02707 -4.3 -5.5 hypothetical protein compare
SMc02137 -4.3 -4.2 ornithine carbamoyltransferase compare
SMc00090 -4.2 -9.1 sulfate adenylyltransferase compare
SMc00614 -4.2 -7.2 phosphoribosylglycinamide formyltransferase compare
SMc02755 -4.2 -4.1 S-adenosyl-L-homocysteine hydrolase compare
SM_b21174 -4.0 -5.6 phosphate uptake ABC transporter permease compare
SM_b20612 -3.9 -10.0 C4-dicarboxylate transport sensor protein conserved
SM_b21175 -3.9 -4.8 phosphate uptake ABC transporter permease compare
SMc03795 -3.8 -2.1 isopropylmalate isomerase small subunit compare
SMc03777 -3.8 -8.1 gamma-glutamyl phosphate reductase compare
SMc01053 -3.8 -4.7 siroheme synthase compare
SMc02166 -3.8 -8.4 dihydroorotase compare
SMc03979 -3.8 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
SM_b20613 -3.7 -10.8 C4-dicarboxylate transport transcriptional regulator compare
SMc01726 -3.7 -4.3 acetylglutamate kinase compare
SMc00294 -3.7 -10.2 aminotransferase compare
SMc02165 -3.7 -8.1 orotate phosphoribosyltransferase compare
SMc00641 -3.6 -6.2 D-3-phosphoglycerate dehydrogenase compare
SMc02307 -3.6 -7.3 histidinol dehydrogenase compare
SMc04346 -3.6 -6.0 ketol-acid reductoisomerase compare
SMc01770 -3.5 -1.6 serine hydroxymethyltransferase compare
SMc00017 -3.5 -1.8 homoserine kinase compare
SMc01360 -3.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
SMc03069 -3.4 -3.2 6-phosphogluconolactonase compare
SM_b21177 -3.4 -8.3 phosphate uptake ABC transporter ATP-binding protein compare
SM_b21176 -3.2 -6.2 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc01206 -3.1 -1.6 queuine tRNA-ribosyltransferase compare
SMc02246 -3.1 -1.2 hypothetical protein compare
SMc01801 -3.1 -3.1 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc00876 -3.0 -2.9 ATP-binding MRP protein compare
SMc02280 -2.9 -2.8 hypothetical protein compare
SMc01361 -2.6 -1.8 dihydroorotase compare
SMc03229 -2.6 -1.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc01207 -2.3 -2.2 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc00088 -2.3 -1.7 hypothetical protein compare
SMc02683 -2.3 -2.6 hypothetical protein compare
SMc01430 -2.2 -5.4 acetolactate synthase 3 regulatory subunit compare
SMc00914 -2.2 -2.5 oxidoreductase compare
SMc00982 -2.2 -5.3 dioxygenase compare
SMc00353 -2.2 -1.7 transmembrane protein compare
SMc01880 -2.1 -1.4 pantoate--beta-alanine ligase compare
SMc01881 -2.1 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc03978 -2.0 -1.4 transketolase compare
SMc04003 -2.0 -1.2 50S ribosomal protein L36 compare
SMc02983 -2.0 -5.7 ornithine, DAP, or arginine decarboxylase compare
SMc00334 -1.8 -1.2 cytidylate kinase compare
SMc01440 -1.7 -5.2 hydrolase serine protease transmembrane protein compare
SMc02753 -1.7 -0.9 PTS system transporter subunit IIA compare
SMc01441 -1.6 -5.4 membrane bound protease compare
SMc02641 -1.5 -1.9 UDP-glucose 6-dehydrogenase compare
SM_b20948 -1.5 -1.6 glucosyltransferase compare
SMc00580 -1.5 -2.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02713 -1.5 -2.0 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02867 -1.5 -2.0 multidrug-efflux system transmembrane protein compare
SMc02897 -1.5 -2.0 cytochrome C transmembrane protein compare
SMc01852 -1.5 -8.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc00295 -1.4 -1.3 hypothetical protein compare
SM_b20746 -1.4 -1.4 hypothetical protein compare
SMc01220 -1.4 -3.8 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00010 -1.4 -1.3 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc00619 -1.4 -1.2 hypothetical protein compare
SMc00013 -1.3 -1.2 cytochrome C oxidase subunit III transmembrane protein compare
SMa1365 -1.3 -1.0 ATP-binding protein compare
SMc03763 -1.3 -0.8 cytosine-specific methyltransferase compare
SMc03996 -1.3 -3.2 thiamine-phosphate pyrophosphorylase compare
SMc01242 -1.2 -1.0 signal peptide protein compare
SMc03850 -1.2 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02640 -1.2 -3.4 UDP-glucuronic acid epimerase compare
SMc00191 -1.2 -1.1 hypothetical protein compare
SMc01578 -1.2 -6.0 aspartate aminotransferase compare
SMc03100 -1.2 -1.1 hypothetical protein compare
SMc03899 -1.1 -0.9 hypothetical protein compare
SMa0144 -1.1 -0.8 hypothetical protein compare
SMc02714 -1.1 -1.3 hypothetical protein compare
SMc00981 -1.1 -3.4 ferredoxin protein compare
SM_b22001 -1.1 -1.6 hypothetical protein compare
SMc02975 -1.1 -4.4 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc01097 -1.1 -2.1 hypothetical protein compare
SMc00566 -1.1 -2.3 hypothetical protein compare
SMc00352 -1.1 -1.4 acetyltransferase compare
SMc02114 -1.1 -2.0 hypothetical protein compare
SMc02172 -1.1 -5.0 transcriptional regulator compare
SMa1017 -1.0 -1.8 hypothetical protein compare
SMa0753 -1.0 -0.7 hypothetical protein compare
SMc00045 -1.0 -1.6 cytochrome C signal peptide protein compare
SMc03030 -1.0 -1.8 flagellar basal body rod protein FlgG compare
SMc00761 -1.0 -6.5 oxidoreductase compare
SM_b20131 -1.0 -2.4 oxidoreductase compare
SMc00169 -1.0 -7.4 malic enzyme compare
SM_b20307 -1.0 -1.0 dihydroxyacetone kinase compare
SMc04391 -1.0 -1.9 3-ketoacyl-ACP reductase compare
SMc02858 -1.0 -0.5 chaperone protein DnaJ compare
SMc02573 -1.0 -1.6 hypothetical protein compare
SMc04213 -1.0 -2.1 diacylglycerol kinase compare
SMc02582 -1.0 -2.0 hypothetical protein compare
SMc01933 -1.0 -1.1 hypothetical protein compare
SM_b22023 -1.0 -1.6 molecular chaperone GroES compare
SM_b20387 -0.9 -1.3 transcriptional regulator compare
SMc03980 -0.9 -2.8 hypothetical protein compare
SM_b20701 -0.9 -0.9 hypothetical protein compare
SMc02046 -0.9 -1.5 hypothetical protein compare
SMa2289 -0.9 -1.1 hypothetical protein compare
SMc00189 -0.9 -2.3 cytochrome C1 protein compare
SMc04404 -0.9 -1.2 amino acid efflux transmembrane protein compare
SMc00709 -0.9 -1.2 hypothetical protein compare
SMa0771 -0.9 -1.6 hypothetical protein compare
SMc01447 -0.9 -0.9 hypothetical protein compare
SMc03186 -0.9 -2.0 transcriptional regulator compare
SMc01522 -0.9 -1.3 hypothetical protein compare
SM_b21633 -0.9 -0.9 enoyl-CoA hydratase compare
SMc02164 -0.8 -2.1 fructokinase compare
SMc03227 -0.8 -3.4 hypothetical protein compare
SMc01124 -0.8 -3.4 PII uridylyl-transferase compare
SMc03010 -0.8 -2.7 chemotaxis-specific methylesterase compare
SMc04092 -0.8 -1.0 hypothetical protein compare
SMc00760 -0.8 -2.1 recombinase A compare
SMc02058 -0.8 -1.5 YAJC protein compare
SMc02576 -0.8 -1.0 acetyltransferase compare
SMc04052 -0.8 -1.1 transcriptional regulator compare
SMc00565 -0.8 -1.0 50S ribosomal protein L9 compare
SM_b21454 -0.8 -1.4 hypothetical protein compare
SM_b20400 -0.8 -1.9 hypothetical protein compare
SMc01454 -0.8 -4.6 hypothetical protein compare
SMc04236 -0.8 -2.6 glycine-rich cell wall structural transmembrane protein compare
SMc01800 -0.8 -0.5 cytochrome C oxidase assembly transmembrane protein compare
SMc01984 -0.8 -1.9 cytochrome-C oxidase transmembrane protein compare
SMc00492 -0.8 -0.5 hypothetical protein compare
SMc00067 -0.8 -3.6 outer-membranne lipoprotein compare
SMc00762 -0.8 -4.6 glutamine synthetase compare
SMc03993 -0.8 -2.0 hypothetical protein compare
SM_b20293 -0.8 -0.7 hypothetical protein compare
SMc02615 -0.8 -1.5 signal peptide protein compare
SM_b20029 -0.7 -2.7 hypothetical protein compare
SMc00405 -0.7 -4.1 hypothetical protein compare
SMc01012 -0.7 -1.1 hypothetical protein compare
SMc00726 -0.7 -0.5 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc04174 -0.7 -0.9 signal peptide protein compare
SMc04224 -0.7 -1.0 hypothetical protein compare
SMc02786 -0.7 -4.1 translocase transmembrane protein compare
SM_b20616 -0.7 -1.8 thiamine biosynthesis oxidoreductase compare
SMc04040 -0.7 -1.7 heat shock protein compare
SM_b20804 -0.7 -3.1 hypothetical protein compare
SMa0117 -0.7 -1.6 hypothetical protein compare
SM_b20474 -0.7 -1.4 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Sinorhizobium meliloti 1021

For carbon source Sodium succinate dibasic hexahydrate across organisms