Experiment set9IT059 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Pyruvate (fermenting) with Na2S as sulfur source with Casamino acids 0.2%

200 most detrimental genes:

  gene name fitness t score description  
DVU2867 +1.8 2.8 holin (TIGR) compare
DVU0311 +1.7 13.2 flagellar assembly protein FliH, putative (TIGR) compare
DVU0044 fliP +1.7 9.1 flagellar biosynthetic protein fliP (TIGR) compare
DVU2045 +1.6 8.1 hypothetical protein (TIGR) compare
DVU2894 flrA +1.6 9.7 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0043 fliQ +1.6 10.2 flagellar biosynthetic protein FliQ (TIGR) compare
DVU1251 +1.5 4.4 hypothetical protein (TIGR) compare
DVU1363 rfbD +1.5 11.3 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU0314 fliE +1.5 9.8 flagellar basal body component FliE (TIGR) compare
DVU0312 fliG +1.5 8.6 flagellar motor switch protein FliG (TIGR) compare
DVU0310 fliI +1.5 10.7 flagellum-specific ATP synthase FliI (TIGR) compare
DVU0047 +1.5 8.3 flagellar protein FliL (TIGR) compare
DVU0315 flgC +1.5 9.9 flagellar basal-body rod protein FlgC (TIGR) compare
DVU0318 +1.4 5.0 TPR domain protein (TIGR) compare
DVU0313 fliF +1.4 9.4 flagellar M-ring protein FliF (TIGR) compare
DVU0045 +1.4 5.1 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU3232 flhA +1.4 10.1 flagellar biosynthetic protein FlhA (TIGR) compare
DVU3233 flhB +1.4 10.2 flagellar biosynthetic protein FlhB (TIGR) compare
DVU0912 +1.4 4.8 conserved domain protein (TIGR) compare
DVU1862 +1.4 4.7 GGDEF domain protein (TIGR) compare
DVU0519 +1.3 12.0 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU0793 +1.3 2.7 hypothetical protein (TIGR) compare
DVU0698 rfbC +1.3 7.8 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU0512 flgF +1.3 9.1 flagellar basal-body rod protein, putative (TIGR) compare
DVU1444 flgD +1.3 7.3 basal-body rod modification protein FlgD (TIGR) compare
DVU0046 fliN +1.3 7.7 flagellar motor switch protein FliN (TIGR) compare
DVU0307 +1.3 8.6 flagella basal body rod domain protein (TIGR) compare
DVU1063 flrC +1.3 9.0 transcriptional regulatory protein (TIGR) compare
DVU0913 +1.3 4.7 conserved hypothetical protein (TIGR) compare
DVU0516 flgI +1.3 8.4 flagellar P-ring protein FlgI (TIGR) compare
DVU0514 +1.2 6.8 FlgA family protein (TIGR) compare
DVU0513 flgG +1.2 10.7 flagellar basal-body rod protein FlgG (TIGR) compare
DVU0410 +1.2 7.1 hypothetical protein (TIGR) compare
DVU0515 flgH +1.2 6.1 flagellar L-ring protein FlgH (TIGR) compare
DVU2444 flaB3 +1.2 7.6 flagellin (TIGR) compare
DVU2896 +1.2 9.4 TPR domain protein (TIGR) compare
DVU2203 +1.2 2.7 endoribonuclease, L-PSP family (TIGR) compare
DVU1465 +1.2 8.3 CgeB family protein (TIGR) compare
DORF12455 +1.2 2.1 SEED: helix-turn-helix protein, CopG family compare
DVU1443 flgE +1.2 7.7 flagellar hook protein FlgE (TIGR) compare
DVU3229 fliA +1.2 4.8 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU0316 flgB +1.1 2.7 flagellar basal-body rod protein FlgB (TIGR) compare
DVU0518 +1.1 5.3 hypothetical protein (TIGR) compare
DVU0522 yviF +1.1 6.5 conserved hypothetical protein (TIGR) compare
DVU0910 fliM +1.1 6.5 flagellar motor switch protein FliM (TIGR) compare
DVU3234 +1.1 4.7 flagellar biosynthetic protein FliR (TIGR) compare
DVU0863 +1.1 8.7 flagellar hook-associated protein 2, putative (TIGR) compare
DVU0295 +1.1 8.9 amine oxidase, flavin-containing (TIGR) compare
DVU2608 motA-3 +1.1 7.7 chemotaxis protein MotA (TIGR) compare
DVU2609 +1.1 4.6 chemotaxis MotB protein, putative (TIGR) compare
DVU3387 +1.0 6.6 hypothetical protein (TIGR) compare
DVU0520 +1.0 7.5 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU0858 +1.0 7.4 lipoprotein, putative (TIGR) compare
DVU2903 pcnB2 +1.0 6.8 HD domain protein (TIGR) compare
DVU1726 +1.0 1.5 hypothetical protein (TIGR) compare
DVU1040 hisB +1.0 1.2 imidazoleglycerol-phosphate dehydratase (TIGR) compare
DVU3227 +1.0 4.8 flagellar basal body-associated protein, putative (TIGR) compare
DVU1445 +0.9 7.0 flagellar hook-length control domain protein (TIGR) compare
DVU3287 +0.9 6.7 glycosyl transferase, group 2 family protein (TIGR) compare
DVU1632 +0.9 3.4 PTS system, IIA component (TIGR) compare
DVU0842 +0.9 2.5 hypothetical protein (TIGR) compare
DVU1446 +0.9 5.2 heptosyltransferase family protein (TIGR) compare
DVU1442 +0.9 2.5 flagellin FlaG, putative (TIGR) compare
DVU0409 +0.9 1.5 hypothetical protein (TIGR) compare
DVU2300 +0.9 1.0 hypothetical protein (TIGR) compare
DVU2669 +0.9 2.2 conserved domain protein (TIGR) compare
DVU1933 +0.8 0.6 peptidase, PfpI family (TIGR) compare
DVU2847 +0.8 3.3 hypothetical protein (TIGR) compare
DVU0008 +0.8 0.6 hypothetical protein (TIGR) compare
DVU0136 +0.8 3.0 hypothetical protein (TIGR) compare
DVU0862 +0.8 3.3 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU0135 +0.8 4.1 conserved hypothetical protein (TIGR) compare
DVU1464 +0.8 5.4 heptosyltransferase family protein (TIGR) compare
DVU2211 +0.8 6.2 hypothetical protein (TIGR) compare
DVU2112 +0.8 2.6 hypothetical protein (TIGR) compare
DVU3329 +0.8 1.6 hypothetical protein (TIGR) compare
DVU0703 lepA +0.8 1.4 GTP-binding protein LepA (TIGR) compare
DVU1908 pdxJ +0.8 1.1 pyridoxal phosphate biosynthetic protein PdxJ (TIGR) compare
DVU1828 gidA +0.8 2.5 glucose inhibited division protein A (TIGR) compare
DVU1863 +0.8 3.6 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU2323 +0.7 1.7 hypothetical protein (TIGR) compare
DVU3299 +0.7 2.6 membrane protein, putative (TIGR) compare
DVU3314 +0.7 1.9 peptidase, U32 family (TIGR) compare
DVU2606 +0.7 1.1 hypothetical protein (TIGR) compare
DVU1447 +0.7 4.0 CgeB family protein (TIGR) compare
DORF26446 +0.7 1.0 no description compare
DVU1449 +0.7 4.7 anti-anti-sigma factor, putative (TIGR) compare
DVU3085 +0.7 1.0 hypothetical protein (TIGR) compare
DVU2873 +0.7 0.7 hypothetical protein (TIGR) compare
DVU2761 +0.7 0.6 hypothetical protein (TIGR) compare
DORF13021 +0.7 0.6 no description compare
DVU2947 +0.7 2.9 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU2391 +0.7 0.5 hypothetical protein (TIGR) compare
DVU1838 trxB-2 +0.7 1.4 thioredoxin reductase (TIGR) compare
DVU1441 flaB1 +0.6 3.3 flagellin (TIGR) compare
DVU1944 oorD +0.6 1.3 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU1609 dapB +0.6 2.0 dihydrodipicolinate reductase (TIGR) compare
DVU1337 lon +0.6 3.2 ATP-dependent protease La (TIGR) compare
DVU3393 +0.6 0.9 hypothetical protein (TIGR) compare
DVU0302 +0.6 2.4 chemotaxis protein CheX, putative (TIGR) compare
DVU0411 +0.6 4.4 heptosyltransferase family protein (TIGR) compare
DVU0399 +0.6 2.7 hypothetical protein (TIGR) compare
DORF807 +0.6 0.8 no description compare
DVU2577 +0.6 3.8 DNA-binding response regulator, LuxR family (TIGR) compare
DVU1260 +0.6 2.9 outer membrane protein P1, putative (TIGR) compare
DVU2200 +0.6 0.6 hypothetical protein (TIGR) compare
DVU1682 +0.6 1.6 GAF domain protein (TIGR) compare
DVU1129 +0.6 2.4 conserved hypothetical protein (TIGR) compare
DVU1589 +0.6 3.2 hypothetical protein (TIGR) compare
DVU2454 +0.6 0.4 hypothetical protein (TIGR) compare
DVU0223 +0.6 0.8 conserved hypothetical protein (TIGR) compare
DVU0682 +0.6 2.1 DNA-binding protein, putative (TIGR) compare
DORF8192 +0.6 1.1 SEED: FIG00606834: hypothetical protein compare
DVU1487 +0.6 1.6 conserved domain protein (TIGR) compare
DVU3225 +0.6 1.8 hypothetical protein (TIGR) compare
DVU2399 +0.6 2.8 hydrogenase, putative (TIGR) compare
DVU2946 +0.5 1.2 hypothetical protein (TIGR) compare
DVU1359 +0.5 2.8 hypothetical protein (TIGR) compare
DVUA0089 +0.5 0.4 hypothetical protein (TIGR) compare
DVU2400 +0.5 2.4 hydrogenase, putative (TIGR) compare
DVU3360 parB +0.5 3.0 ParB family protein (TIGR) compare
DVU0898 +0.5 2.8 conserved hypothetical protein (TIGR) compare
DVU1038 hisA +0.5 0.9 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR) compare
DVU0909 +0.5 2.4 hypothetical protein (TIGR) compare
DVU2021 +0.5 1.0 hypothetical protein (TIGR) compare
DVU2510 +0.5 0.3 penicillin-binding protein (TIGR) compare
DVU1338 +0.5 2.4 conserved hypothetical protein (TIGR) compare
DVU2401 +0.5 2.9 hydrogenase, iron-sulfur cluster-binding subunit, putative (TIGR) compare
DVU0097 potB +0.5 1.4 polyamine ABC transporter, permease protein (TIGR) compare
DVU1039 +0.5 1.2 lipoprotein, putative (TIGR) compare
DVU2578 +0.5 2.9 response regulator (TIGR) compare
DVU1629 yfiA +0.5 2.7 ribosomal subunit interface protein (TIGR) compare
DORF25031 +0.5 1.8 SEED: FIG00606465: hypothetical protein compare
DVU1407 +0.5 2.1 radical SAM domain protein (TIGR) compare
DVU1536 mltC +0.5 1.6 transglycosylase, SLT family (TIGR) compare
DVU1237 glnP +0.5 0.8 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU0298 +0.5 1.3 hypothetical protein (TIGR) compare
DVU2404 hdrC +0.5 1.9 heterodisulfide reductase, C subunit (TIGR) compare
DVU2332 proC +0.5 0.8 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
DVU0024 +0.4 0.5 conserved hypothetical protein (TIGR) compare
DVU0057 +0.4 2.3 transcriptional regulator, TetR family (TIGR) compare
DVU0039 +0.4 2.6 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU1604 +0.4 2.6 hypothetical protein (TIGR) compare
DVU0486 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0555 +0.4 0.5 hypothetical protein (TIGR) compare
DVU2748 cobM +0.4 1.4 precorrin-4 C11-methyltransferase (TIGR) compare
DVU0897 +0.4 2.0 RNA modification enzyme, MiaB-family (TIGR) compare
DVU2993 +0.4 3.5 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU2345 +0.4 1.2 hypothetical protein (TIGR) compare
DVU0989 +0.4 1.4 periplasmic divalent cation tolerance protein cutA, putative (TIGR) compare
DORF768 +0.4 1.1 no description compare
DVU1045 +0.4 2.1 hypothetical protein (TIGR) compare
DVU2591 +0.4 1.4 tail fiber assembly protein, putative (TIGR) compare
DVU0829 ptsI +0.4 2.0 phosphoenolpyruvate-protein phosphotransferase (TIGR) compare
DVU1280 +0.4 1.6 conserved hypothetical protein TIGR00159 (TIGR) compare
DVU1236 +0.4 1.5 amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU2915 +0.4 1.8 hypothetical protein (TIGR) compare
DVU1690 +0.4 0.7 transcriptional regulator, TetR family (TIGR) compare
DVU1961 cheW-3 +0.4 0.7 chemotaxis protein CheW (TIGR) compare
DVU1009 +0.4 0.9 hypothetical protein (TIGR) compare
DVUA0121 +0.4 2.3 type III secretion system protein, YopQ family (TIGR) compare
DVU0859 +0.4 2.0 hypothetical protein (TIGR) compare
DVU1593 cheY-1 +0.4 1.3 chemotaxis protein CheY (TIGR) compare
DVU1369 +0.4 1.8 hypothetical protein (TIGR) compare
DORF43366 +0.4 2.1 no description compare
DVU2462 +0.4 2.0 oligopeptide ABC transporter, permease protein (TIGR) compare
DVUA0146 +0.4 1.3 hypothetical protein (TIGR) compare
DVU1873 ppiB-2 +0.4 1.2 peptidyl-prolyl cis-trans isomerase B (TIGR) compare
DORF43335 +0.4 0.5 no description compare
DORF19331 +0.4 1.3 no description compare
DVU2750 cbiD +0.4 2.1 cobalamin biosynthesis protein CbiD (TIGR) compare
DORF9585 +0.4 0.5 no description compare
DVU0048 +0.4 2.3 chemotaxis protein MotB (TIGR) compare
DVU2107 +0.4 1.8 hypothetical protein (TIGR) compare
DVU1752 +0.4 1.4 hypothetical protein (TIGR) compare
DVU1875 +0.4 0.6 dafA protein (TIGR) compare
DVU0911 truA +0.4 1.6 tRNA pseudouridine synthase A (TIGR) compare
DVU3165 +0.4 2.1 conserved domain protein (TIGR) compare
DVU0521 csrA +0.4 1.3 carbon storage regulator (TIGR) compare
DVU1551 +0.4 2.3 HD domain protein (TIGR) compare
DVU0705 dctM +0.4 1.5 TRAP dicarboxylate transporter, putative (TIGR) compare
DVU1434 +0.4 0.3 hypothetical protein (TIGR) compare
DVU1068 +0.4 1.2 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU2350 gid +0.4 2.5 gid protein (TIGR) compare
DVU2269 +0.4 1.2 hypothetical protein (TIGR) compare
DVU1193 radC +0.4 1.2 DNA repair protein RadC (TIGR) compare
DVU0754 +0.4 0.7 hypothetical protein (TIGR) compare
DVU2871 +0.4 1.4 minor capsid protein C (TIGR) compare
DVU3214 +0.4 2.7 phosphoenolpyruvate synthase-related protein (TIGR) compare
DVU1799 fusA-2 +0.4 2.4 translation elongation factor G (TIGR) compare
DVU1922 hynA-1 +0.4 2.4 periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 (TIGR) compare
DVU0377 trxB-1 +0.4 1.3 thioredoxin reductase (TIGR) compare
DVU2423 +0.4 1.3 transcriptional regulator, putative (TIGR) compare
DVU0274 +0.4 1.5 hypothetical protein (TIGR) compare
DVU1708 +0.4 0.9 conserved hypothetical protein (TIGR) compare
DVU0830 ptsH +0.4 0.5 phosphocarrier protein HPr (TIGR) compare
DVU0980 b1199 +0.4 1.9 DAK2 domain protein (TIGR) compare
DVUA0011 nifK +0.4 2.0 nitrogenase molybdenum-iron protein beta chain (TIGR) compare
DVU2877 +0.4 1.6 hypothetical protein (TIGR) compare
DVUA0114 +0.3 1.1 hypothetical protein (TIGR) compare


Specific Phenotypes

For 3 genes in this experiment

For fermentative growth Sodium pyruvate in Desulfovibrio vulgaris Hildenborough JW710

For fermentative growth Sodium pyruvate across organisms